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Gene AACSTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
424 supporting clones for gene AACS back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DB484100 hippocampus .a 1 to 501 1 to 502   tiling clone,   502/502
(100 %)
3 diff
(99.5 %id)
BC040490 testis .a 8 to 3318 1 to 3311 I118V tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (21/23 A in genome downstream of last aligned base) 3311/3311
(100 %)
1 diff
(100.0 %id)
NM_023928.3   .a 8 to 3328 1 to 3321   RefSeq, AAA Possibly primed on the genome, locally A rich (21/23 A in genome downstream of last aligned base) 3321/3321
(100 %)
0 diff
(100 %id)
DB461100 testis .a 19 to 495 1 to 478       478/478
(100 %)
3 diff
(99.4 %id)
DA435591 tongue, tumor tissue .a 39 to 402 2 to 365   capped   364/364
(100 %)
0 diff
(100 %id)
DA176046 amygdala .a 59 to 463 2 to 406   capped   405/405
(100 %)
4 diff
(99.1 %id)
DA792081 brain .a 59 to 519 20 to 480   capped   461/479
(96 %)
5 diff
(99.0 %id)
DA443121 tongue, tumor tissue .a 61 to 622 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DA490497 brain .a 61 to 626 2 to 567   capped   566/566
(100 %)
2 diff
(99.7 %id)
DB083090 testis .a 61 to 622 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DB120806 thymus .a 61 to 617 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DB231961 trachea .a 61 to 656 2 to 597   capped   596/596
(100 %)
1 diff
(99.9 %id)
DA285835 corpus callosum .a 64 to 556 2 to 494   capped   493/493
(100 %)
0 diff
(100 %id)
DA654081   .a 64 to 660 2 to 598   capped   597/597
(100 %)
1 diff
(99.9 %id)
DA051626   .a 65 to 465 2 to 402   capped   401/401
(100 %)
0 diff
(100 %id)
DA114548 cerebellum .a 65 to 615 2 to 553   capped   550/552
(99 %)
0 diff
(100 %id)
DA123841 cerebellum .a 65 to 616 2 to 553   capped   552/552
(100 %)
1 diff
(99.9 %id)
DA163071 amygdala .a 65 to 535 2 to 472   capped   471/471
(100 %)
2 diff
(99.6 %id)
DA185197 amygdala .a 65 to 576 2 to 513   capped   512/512
(100 %)
0 diff
(100 %id)
DA195855 amygdala .a 65 to 628 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA203465 brain .a 65 to 643 2 to 580   capped   579/579
(100 %)
1 diff
(99.9 %id)
DA305627 hippocampus .a 65 to 630 2 to 567   capped   566/566
(100 %)
2 diff
(99.7 %id)
DA387967 thalamus .a 65 to 637 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA400860 thalamus .a 65 to 628 2 to 565   capped   564/564
(100 %)
1 diff
(99.9 %id)
DA413431 thalamus .a 65 to 608 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
DA443188 tongue, tumor tissue .a 65 to 635 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
DA457884 tongue, tumor tissue .a 65 to 452 2 to 390   capped   389/389
(100 %)
3 diff
(99.3 %id)
DA501490 brain .a 65 to 623 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA580433   .a 65 to 640 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DA594186 lung .a 65 to 625 2 to 562   capped   561/561
(100 %)
2 diff
(99.7 %id)
DA743780   .a 65 to 552 2 to 489   capped   488/488
(100 %)
0 diff
(100 %id)
DA758661   .a 65 to 503 2 to 440   capped   439/439
(100 %)
0 diff
(100 %id)
DA759564   .a 65 to 608 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
DA779913 brain .a 65 to 635 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
DA782401 brain .a 65 to 630 2 to 567   capped   566/566
(100 %)
2 diff
(99.7 %id)
DA789176 brain .a 65 to 390 2 to 327   capped   326/331
(98 %)
1 diff
(99.7 %id)
DA806664 brain .a 65 to 637 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA991533 synovial membrane tissue from rheumatioidarthritis .a 65 to 611 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
DB000038 breast, tumor tissue .a 65 to 527 2 to 464   capped   463/463
(100 %)
0 diff
(100 %id)
DB000567 breast, tumor tissue .a 65 to 534 2 to 471   capped   470/470
(100 %)
1 diff
(99.8 %id)
DB156557 thymus .a 65 to 643 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
DB216740 trachea .a 65 to 534 2 to 471   capped   470/470
(100 %)
0 diff
(100 %id)
DB216817 trachea .a 65 to 613 2 to 550   capped   549/549
(100 %)
1 diff
(99.9 %id)
DB218138 trachea .a 65 to 618 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DB222274 trachea .a 65 to 640 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DB248457 uterus .a 65 to 642 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
AK022451 mammary gland .a 66 to 3318 1 to 3253 A119V E137G V150A available from FLJ,   3253/3253
(100 %)
9 diff
(99.8 %id)
AK024036   .a 67 to 3318 1 to 3251 G70E K128E W519G A520L H521M ... available from FLJ,   3251/3251
(100 %)
5 diff
(99.9 %id)
AU122580 mammary gland .a 67 to 844 2 to 790   capped   789/790
(99 %)
25 diff
(96.9 %id)
DA730865   .a 67 to 683 16 to 632   capped   617/617
(100 %)
4 diff
(99.4 %id)
DA193825 amygdala .a 68 to 657 2 to 591   capped   590/590
(100 %)
0 diff
(100 %id)
DA448275 tongue, tumor tissue .a 68 to 603 2 to 537   capped   536/536
(100 %)
0 diff
(100 %id)
DA455530 tongue, tumor tissue .a 68 to 625 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
DA456800 tongue, tumor tissue .a 68 to 328 2 to 262   capped   261/261
(100 %)
0 diff
(100 %id)
DA480947   .a 68 to 629 2 to 563   capped   562/562
(100 %)
1 diff
(99.9 %id)
DA488171 brain .a 68 to 328 2 to 263   capped   262/262
(100 %)
2 diff
(99.3 %id)
DA499916 brain .a 68 to 618 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DA506543 brain .a 68 to 649 2 to 583   capped   582/584
(99 %)
1 diff
(99.9 %id)
DA768961 brain .a 68 to 519 2 to 453   capped   452/452
(100 %)
0 diff
(100 %id)
DA863322 placenta .a 68 to 702 2 to 636   capped   635/635
(100 %)
1 diff
(99.9 %id)
DB100403 testis .a 68 to 663 2 to 597   capped   596/596
(100 %)
0 diff
(100 %id)
DB221079 trachea .a 68 to 622 2 to 556   capped   555/555
(100 %)
2 diff
(99.7 %id)
DB247519 uterus .a 68 to 617 2 to 552   capped   551/551
(100 %)
6 diff
(99.0 %id)
AU143219   .a 68 to 867 2 to 798   capped   797/803
(99 %)
24 diff
(97.1 %id)
DA185879 amygdala .a 69 to 595 2 to 528   capped   527/527
(100 %)
0 diff
(100 %id)
DA759244   .a 69 to 482 2 to 415   capped   414/414
(100 %)
1 diff
(99.8 %id)
DB217600 trachea .a 69 to 507 2 to 440   capped   439/439
(100 %)
0 diff
(100 %id)
DA067402 cerebellum .a 70 to 632 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
DA192787 amygdala .a 70 to 642 2 to 574   capped   573/573
(100 %)
1 diff
(99.9 %id)
DA233784 brain .a 70 to 646 2 to 578   capped   577/577
(100 %)
2 diff
(99.7 %id)
DA243801 brain .a 70 to 666 2 to 598   capped   597/597
(100 %)
1 diff
(99.9 %id)
DA279174 corpus callosum .a 70 to 635 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA647930   .a 70 to 584 2 to 516   capped   515/515
(100 %)
1 diff
(99.9 %id)
DA664811   .a 70 to 626 2 to 558   capped   557/557
(100 %)
1 diff
(99.9 %id)
DA796359 brain .a 70 to 582 2 to 520   capped   517/523
(98 %)
8 diff
(98.5 %id)
DB156232 thymus .a 70 to 633 2 to 565   capped   564/564
(100 %)
1 diff
(99.9 %id)
DB169480 kidney, tumor tissue .a 70 to 651 2 to 583   capped   582/582
(100 %)
0 diff
(100 %id)
DB235201 trachea .a 70 to 616 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
DB275327 uterus .a 70 to 552 2 to 484   capped   483/483
(100 %)
3 diff
(99.4 %id)
DA418531 thalamus .a 71 to 742 2 to 673   capped   672/672
(100 %)
1 diff
(99.9 %id)
DA800107 brain .a 71 to 611 2 to 542   capped   541/541
(100 %)
0 diff
(100 %id)
DA796695 brain .a 72 to 604 2 to 534   capped   533/533
(100 %)
0 diff
(100 %id)
DA120664 cerebellum .a 73 to 622 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DA125316 cerebellum .a 73 to 328 2 to 257   capped   256/256
(100 %)
0 diff
(100 %id)
DA174374 amygdala .a 73 to 454 2 to 383   capped   382/382
(100 %)
0 diff
(100 %id)
DA291744 hippocampus .a 73 to 656 2 to 585   capped   584/584
(100 %)
3 diff
(99.5 %id)
DA397795 thalamus .a 73 to 652 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
DA414917 thalamus .a 73 to 633 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA451352 tongue, tumor tissue .a 73 to 608 2 to 537   capped   536/536
(100 %)
0 diff
(100 %id)
DA454210 tongue, tumor tissue .a 73 to 649 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DA455374 tongue, tumor tissue .a 73 to 650 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
DA458491 tongue, tumor tissue .a 73 to 657 2 to 586   capped   585/585
(100 %)
0 diff
(100 %id)
DA613858   .a 73 to 647 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DA723360   .a 73 to 628 2 to 557   capped   556/556
(100 %)
1 diff
(99.9 %id)
DA746951   .a 73 to 632 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DA766189 tongue .a 73 to 643 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
DA770192 brain .a 73 to 631 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA809158 brain .a 73 to 618 2 to 547   capped   546/546
(100 %)
0 diff
(100 %id)
DA851126 placenta .a 73 to 633 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA860888 placenta .a 73 to 648 2 to 577   capped   576/576
(100 %)
2 diff
(99.7 %id)
DB170424 kidney, tumor tissue .a 73 to 642 2 to 572   capped   571/571
(100 %)
3 diff
(99.5 %id)
DB194738 trachea .a 73 to 593 2 to 522   capped   521/521
(100 %)
3 diff
(99.5 %id)
DB221947 trachea .a 73 to 627 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DB225030 trachea .a 73 to 598 2 to 526   capped   523/525
(99 %)
2 diff
(99.7 %id)
DA046383 bladder .a 74 to 458 2 to 387   capped   386/386
(100 %)
1 diff
(99.8 %id)
DA456451 tongue, tumor tissue .a 75 to 636 2 to 563   capped   562/567
(99 %)
1 diff
(99.9 %id)
AW170519 cervix, tumor .a 79 to 657 1 to 579     Submitted on the opposite strand 579/579
(100 %)
6 diff
(99.0 %id)
BX363145   .a 80 to 982 1 to 900       900/1019
(88 %)
12 diff
(98.9 %id)
BQ653038 hepatocellular carcinoma, cell line, Liver .a 80 to 942 1 to 869       867/905
(95 %)
10 diff
(98.9 %id)
BQ651986 hepatocellular carcinoma, cell line, Liver .a 80 to 636 1 to 557       557/972
(57 %)
2 diff
(99.8 %id)
BQ066934 brain .a 84 to 899 11 to 825       815/1038
(78 %)
28 diff
(97.4 %id)
BM806257 leiomyosarcoma, uterus .a 87 to 1104 1 to 1023       1021/1068
(95 %)
33 diff
(97.0 %id)
BQ062810 lymph, lymphoma, cell line .a 88 to 774 32 to 727       696/1021
(68 %)
30 diff
(97.1 %id)
AL538531 brain, fetal brain .a 89 to 1080 1 to 981       981/1021
(96 %)
14 diff
(98.7 %id)
BQ056494 lymph, lymphoma, cell line .a 89 to 948 1 to 867       867/1057
(82 %)
15 diff
(98.6 %id)
BQ056788 lymph, lymphoma, cell line .a 89 to 899 1 to 811       811/995
(81 %)
9 diff
(99.1 %id)
BQ641922 lymph, lymphoma, cell line .a 89 to 892 1 to 805       805/941
(85 %)
10 diff
(99.0 %id)
BC051862 Brain, adult, 6 pooled whole brains .a 90 to 3322 1 to 3233   tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (21/23 A in genome downstream of last aligned base) 3233/3233
(100 %)
2 diff
(100.0 %id)
CN343363 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 99 to 414 1 to 316       316/316
(100 %)
0 diff
(100 %id)
DA725491   .a 99 to 662 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
AB054121   .a 107 to 2439 1 to 2333       2333/2334
(99 %)
2 diff
(100.0 %id)
BQ719763 dorsal root ganglia .a 109 to 784 1 to 676       676/947
(71 %)
4 diff
(99.6 %id)
CN343364 embryonic stem cells, cell lines H1, H7, andH9 .a 110 to 774 1 to 665       665/665
(100 %)
2 diff
(99.7 %id)
DR005357 Prostate .a 176 to 835 1 to 659       659/659
(100 %)
6 diff
(99.1 %id)
CB129945 Liver .a 182 to 637 1 to 456       456/456
(100 %)
0 diff
(100 %id)
EL734670 mixed .a 214 to 839 1 to 626       626/626
(100 %)
0 diff
(100 %id)
AY091468   .a 246 to 2408 12 to 2181       2170/2184
(99 %)
20 diff
(99.1 %id)
BQ069619 brain, neuroblastoma, cell line .a 268 to 1138 1 to 882       882/1046
(84 %)
20 diff
(98.1 %id)
BI334604 cervical carcinoma cell line, cervix .a 273 to 919 1 to 647       647/647
(100 %)
2 diff
(99.7 %id)
DB006514 cervix, tumor tissue .a 284 to 834 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DA762851 tongue .a 324 to 885 10 to 571   capped   562/570
(98 %)
8 diff
(98.6 %id)
TI_59387502   .a 330 to 989 103 to 768       668/756
(88 %)
45 diff
(94.1 %id)
BM017251 astrocytoma grade IV, cell line, brain .a 346 to 989 17 to 667       653/757
(86 %)
49 diff
(93.6 %id)
AL833047 stomach .a 355 to 3328 1 to 2974   available from DKFZ, AAA Possibly primed on the genome, locally A rich (21/23 A in genome downstream of last aligned base) 2974/2974
(100 %)
2 diff
(100.0 %id)
CD723748 eye, lacrimal gland .a 358 to 974 1 to 617       617/617
(100 %)
0 diff
(100 %id)
AI798645 Prostate .a 419 to 676 442 to 185   AAA   258/431
(59 %)
0 diff
(100 %id)
BE297678 muscle, rhabdomyosarcoma .a 450 to 1139 38 to 735       698/735
(94 %)
20 diff
(97.3 %id)
BI226451 Burkitt lymphoma, lymph .a 450 to 1286 1 to 772       719/775
(92 %)
79 diff
(89.9 %id)
AU131024   .a 450 to 1215 2 to 772   capped   771/799
(96 %)
10 diff
(98.8 %id)
BE396494 Burkitt lymphoma, lymph .a 470 to 1129 1 to 667       667/756
(88 %)
12 diff
(98.5 %id)
DA455212 tongue, tumor tissue .a 541 to 1135 2 to 597   capped   596/596
(100 %)
1 diff
(99.9 %id)
BF203840 muscle, rhabdomyosarcoma .a 548 to 1211 1 to 667       667/972
(68 %)
9 diff
(99.1 %id)
DA776792 brain .a 563 to 1152 2 to 591   capped   590/590
(100 %)
0 diff
(100 %id)
DA585668 lung .a 564 to 1176 2 to 616   capped   615/615
(100 %)
2 diff
(99.7 %id)
DA763076 tongue .a 593 to 1142 2 to 552   capped   551/551
(100 %)
1 diff
(99.9 %id)
CB143273 Liver .a 602 to 1227 1 to 626       626/626
(100 %)
0 diff
(100 %id)
BG424259 Kidney, renal cell adenocarcinoma .a 618 to 1315 1 to 699       699/968
(72 %)
15 diff
(98.5 %id)
BG325781 Kidney, renal cell adenocarcinoma .a 620 to 1358 1 to 733       733/734
(99 %)
13 diff
(98.3 %id)
BE272636 Kidney, renal cell adenocarcinoma .a 639 to 1262 1 to 628       628/632
(99 %)
9 diff
(98.6 %id)
DA515983 brain .a 650 to 1151 2 to 504   capped   503/503
(100 %)
1 diff
(99.9 %id)
CN372950 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 670 to 1350 1 to 682       682/682
(100 %)
1 diff
(99.9 %id)
BG822537 adenocarcinoma cell line, colon .a 694 to 1449 1 to 755       753/756
(99 %)
6 diff
(99.3 %id)
BG824580 adenocarcinoma cell line, colon .a 694 to 1602 1 to 922       854/923
(92 %)
17 diff
(98.2 %id)
DA160392 amygdala .a 714 to 1292 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
DB260852 uterus .a 732 to 1289 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
BC004997 Kidney, renal cell adenocarcinoma .a 745 to 3322 1 to 2578   available from MGC, AAA Possibly primed on the genome, locally A rich (21/23 A in genome downstream of last aligned base) 2578/2578
(100 %)
1 diff
(100.0 %id)
BE336684 Kidney, renal cell adenocarcinoma .a 746 to 1347 1 to 603   available from MGC,   603/603
(100 %)
1 diff
(99.9 %id)
BM925305 brain .a 758 to 1403 12 to 662       651/1181
(55 %)
15 diff
(98.8 %id)
DB011964 esophageal, tumor tissue .a 767 to 1332 2 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
DA505340 brain .a 783 to 1327 2 to 549   capped   548/548
(100 %)
3 diff
(99.5 %id)
BG327876 Kidney, renal cell adenocarcinoma .a 908 to 1523 1 to 615       615/931
(66 %)
3 diff
(99.7 %id)
DA740339   .a 934 to 1444 2 to 512   capped   511/511
(100 %)
1 diff
(99.9 %id)
AU124876   .a 962 to 1673 2 to 711   capped   710/710
(100 %)
3 diff
(99.6 %id)
BP265784 thyroid .a 978 to 1523 1 to 546       546/552
(98 %)
4 diff
(99.3 %id)
BQ641522 eye, normal pigmented retinal epithelium .a 985 to 1883 1 to 902       902/902
(100 %)
6 diff
(99.4 %id)
BI868216 adenocarcinoma, cell line, Liver .a 1075 to 1857 1 to 784       782/784
(99 %)
9 diff
(98.9 %id)
TI_57227869   .a 1075 to 1857 57 to 840       782/784
(99 %)
9 diff
(98.9 %id)
CB125962 cervix, Uterine .a 1082 to 1723 1 to 642       642/642
(100 %)
3 diff
(99.6 %id)
CR603159 adult brain .a 1083 to 3293 1 to 2211       2211/2211
(100 %)
0 diff
(100 %id)
BX463438 adult brain, brain .a 1083 to 2056 1 to 966       966/989
(97 %)
17 diff
(98.3 %id)
DB474805 hippocampus .a 1090 to 1589 1 to 501       501/505
(99 %)
2 diff
(99.7 %id)
BE783690 eye, retinoblastoma .a 1164 to 1885 1 to 717       717/750
(95 %)
10 diff
(98.7 %id)
BG121346 adenocarcinoma, cell line, Liver .a 1169 to 1823 1 to 650       650/986
(65 %)
20 diff
(98.0 %id)
BE251607 eye, retinoblastoma .a 1234 to 1821 1 to 590       590/590
(100 %)
2 diff
(99.7 %id)
DA150448 amygdala .a 1270 to 1498 2 to 230   capped   229/229
(100 %)
0 diff
(100 %id)
BQ888370 epidermoid carcinoma, cell line, lung .a 1286 to 2094 1 to 814       814/894
(91 %)
13 diff
(98.6 %id)
DA161193 amygdala .a 1307 to 1867 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
CB154636 brain .a 1311 to 1835 1 to 525       525/525
(100 %)
0 diff
(100 %id)
BE791603 lung, small cell carcinoma .a 1343 to 2086 1 to 737       737/1103
(66 %)
12 diff
(99.0 %id)
CF144956 CNCAP(3)T-225 cell line, Prostate .a 1354 to 1858 8 to 512       505/512
(98 %)
7 diff
(98.7 %id)
TI_154177080   .a 1354 to 2096 77 to 828       752/1018
(73 %)
42 diff
(95.9 %id)
DA004810   .a 1415 to 1980 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
CD631782   .a 1416 to 2175 1 to 758       758/758
(100 %)
17 diff
(97.8 %id)
BP310543 brain .a 1418 to 2009 1 to 592       592/592
(100 %)
5 diff
(99.2 %id)
BQ931908 eye, normal pigmented retinal epithelium .a 1438 to 2311 1 to 884       884/942
(93 %)
17 diff
(98.2 %id)
EC529295 Prostate .a 1444 to 1530 87 to 3       85/87
(97 %)
8 diff
(90.9 %id)
EC544608 Prostate .a 1449 to 1523 83 to 11       73/86
(84 %)
0 diff
(100 %id)
EC516450 Prostate .a 1461 to 1530 71 to 2       70/75
(93 %)
5 diff
(93.4 %id)
BG742068 skin .a 1470 to 2323 1 to 857       857/872
(98 %)
26 diff
(97.1 %id)
AK024760   .a 1489 to 3322 1 to 1834   available from FLJ, AAA Possibly primed on the genome, locally A rich (21/23 A in genome downstream of last aligned base) 1834/1834
(100 %)
7 diff
(99.7 %id)
BP205528 coronary artery .a 1489 to 2071 1 to 583       583/583
(100 %)
2 diff
(99.7 %id)
BQ055505 lymph, lymphoma, cell line .a 1495 to 2396 1 to 912       912/1000
(91 %)
28 diff
(97.2 %id)
BE730294 melanotic melanoma, skin .a 1525 to 2301 12 to 785       774/786
(98 %)
11 diff
(98.7 %id)
AA133059 colon, tumor .a 1545 to 1832 1 to 285       285/286
(99 %)
5 diff
(98.3 %id)
BX453762 adult brain, brain .a 1571 to 2520 947 to 1       947/950
(99 %)
23 diff
(97.6 %id)
CR613420 Placenta Cot 25-normalized .a 1583 to 3315 1 to 1733       1733/1733
(100 %)
0 diff
(100 %id)
BE747651 adenocarcinoma cell line, ovary .a 1583 to 2372 27 to 808       782/1008
(77 %)
25 diff
(97.6 %id)
BE742022 adenocarcinoma cell line, ovary .a 1583 to 2413 31 to 864       834/864
(96 %)
23 diff
(97.4 %id)
BX395991 Placenta Cot 25-normalized .a 1584 to 2736 1 to 1147       1147/1150
(99 %)
12 diff
(99.0 %id)
BM046778 carcinoma, cell line, Prostate .a 1615 to 2367 1 to 756       756/756
(100 %)
8 diff
(99.0 %id)
AW953144   .a 1616 to 2128 1 to 513       513/513
(100 %)
9 diff
(98.3 %id)
BQ943810 carcinoma, cell line, Prostate .a 1617 to 2311 1 to 701       701/899
(77 %)
26 diff
(97.2 %id)
BU541993 carcinoma, cell line, Prostate .a 1617 to 2260 1 to 646       646/1010
(63 %)
11 diff
(99.0 %id)
BU543521 carcinoma, cell line, Prostate .a 1617 to 2507 1 to 895       895/896
(99 %)
8 diff
(99.2 %id)
BE740663 adenocarcinoma cell line, ovary .a 1622 to 2494 1 to 876       876/900
(97 %)
28 diff
(96.9 %id)
AA349694 brain .a 1626 to 1962 1 to 337       337/337
(100 %)
2 diff
(99.5 %id)
BM049793 carcinoma, cell line, Prostate .a 1725 to 2399 1 to 673       673/673
(100 %)
5 diff
(99.3 %id)
BQ928873 carcinoma, cell line, Prostate .a 1727 to 2668 1 to 948       948/949
(99 %)
16 diff
(98.4 %id)
BE258960 eye, retinoblastoma .a 1736 to 2456 20 to 736       717/736
(97 %)
26 diff
(96.5 %id)
TI_57187665   .a 1740 to 2411 84 to 755       672/672
(100 %)
0 diff
(100 %id)
BI856890 breast, mammary adenocarcinoma, cell line .a 1741 to 2411 1 to 671       671/671
(100 %)
0 diff
(100 %id)
CD579774 brain .a 1745 to 2364 1 to 621       621/621
(100 %)
8 diff
(98.8 %id)
CR735650 adenocarcinoma, cell line, breast .a 1752 to 2267 38 to 553       516/553
(93 %)
0 diff
(100 %id)
BQ278873 adenocarcinoma, cell line, breast .a 1754 to 2750 1 to 1014       1014/1018
(99 %)
30 diff
(97.1 %id)
BG470993 eye, retinoblastoma .a 1755 to 2479 1 to 727       727/733
(99 %)
20 diff
(97.3 %id)
BM452996 leiomyosarcoma, uterus .a 1799 to 2667 13 to 891       879/1019
(86 %)
41 diff
(96.0 %id)
BU507305 leiomyosarcoma, uterus .a 1812 to 2586 1 to 786       786/861
(91 %)
26 diff
(97.0 %id)
CD631783   .a 1878 to 2541 664 to 6       659/664
(99 %)
0 diff
(100 %id)
BQ958782 carcinoma, cell line, Prostate .a 1887 to 2491 163 to 769       607/960
(63 %)
18 diff
(98.2 %id)
BG676436 skin, squamous cell carcinoma .a 1905 to 2793 1 to 888       888/997
(89 %)
22 diff
(97.8 %id)
R59020 whole brain .a 1915 to 2408 1 to 499       499/502
(99 %)
15 diff
(97.1 %id)
AW606625 head_neck .a 1925 to 2468 544 to 1       544/547
(99 %)
15 diff
(97.3 %id)
AW606740 head_neck .a 1925 to 2468 544 to 1       544/547
(99 %)
15 diff
(97.3 %id)
CK004863 brain/CNS, Human Brain - Frontal Cortex .a 1939 to 2585 1 to 647       647/659
(98 %)
7 diff
(99.0 %id)
BG034889 adenocarcinoma, cell line, Liver .a 1958 to 2717 12 to 768       757/1086
(69 %)
28 diff
(97.5 %id)
R48370 breast .a 2024 to 2443 15 to 440       426/440
(96 %)
14 diff
(96.9 %id)
BX363144   .a 2283 to 3291 1012 to 12       1001/1038
(96 %)
0 diff
(100 %id)
AL567358 brain, fetal brain .a 2308 to 3290 976 to 1       976/976
(100 %)
9 diff
(99.1 %id)
AU148126 mammary gland .a 2752 to 3318 564 to 1       564/564
(100 %)
11 diff
(98.1 %id)
AU152860   .a 2772 to 3322 550 to 1       550/550
(100 %)
11 diff
(98.0 %id)
AU148657   .a 2774 to 3318 543 to 1       543/549
(98 %)
15 diff
(97.3 %id)
AU148883   .a 2798 to 3318 523 to 1       523/533
(98 %)
3 diff
(99.5 %id)
AA132979 colon, tumor .a 2876 to 3324 449 to 2       448/451
(99 %)
0 diff
(100 %id)
R48270 breast .a 2942 to 3317 392 to 1       392/425
(92 %)
23 diff
(94.6 %id)
BC041000 testis .b 1 to 3102 1 to 3103 G4C I185V L270A I271H F272L ... tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (21/23 A in genome downstream of last aligned base) 3103/3103
(100 %)
7 diff
(99.8 %id)
U90731   .b 1767 to 1954 1 to 185       185/185
(100 %)
16 diff
(91.4 %id)
AK022740   .c 1 to 2435 1 to 2280 V108E K147R tiling clone, available from FLJ, Suspected internal deletion 2280/2280
(100 %)
3 diff
(99.9 %id)
DB054154 testis .d 1 to 559 2 to 560   tiling clone, capped   559/559
(100 %)
0 diff
(100 %id)
BI460127 testis .d 8 to 703 1 to 702   available from MGC,   702/703
(99 %)
20 diff
(97.2 %id)
BC040574 testis .d 13 to 3126 1 to 3113 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (21/23 A in genome downstream of last aligned base) 3113/3113
(100 %)
3 diff
(100.0 %id)
CD359622 testis .d 962 to 1694 10 to 745   tiling clone,   736/945
(77 %)
20 diff
(97.9 %id)
DB338790 testis .d 1600 to 2131 532 to 1       532/532
(100 %)
0 diff
(100 %id)
DB480611 hippocampus .e 1 to 429 1 to 429   tiling clone,   429/434
(98 %)
3 diff
(99.4 %id)
BU619739 Cell Line, Chondrosarcoma .e 327 to 982 674 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (21/23 A in genome downstream of last aligned base) 656/656
(100 %)
0 diff
(100 %id)
DA102358 cerebellum .f 1 to 499 2 to 500   tiling clone, capped   499/499
(100 %)
0 diff
(100 %id)
DA352335 substantia nigra .f 321 to 890 2 to 572   tiling clone, capped   571/571
(100 %)
1 diff
(99.9 %id)
AA630206 lung .f 355 to 813 1 to 459     Submitted on the opposite strand 459/459
(100 %)
2 diff
(99.6 %id)
BM721764 eye, fetal eye .f 453 to 890 1 to 439     Possibly primed on the genome, locally A rich (21/23 A in genome downstream of last aligned base) 439/439
(100 %)
1 diff
(99.8 %id)
DB299236 cerebellum .f 1959 to 2518 560 to 1   tiling clone,   560/560
(100 %)
3 diff
(99.5 %id)
BM677346 eye, fetal eye .f 2065 to 2519 473 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (21/23 A in genome downstream of last aligned base) 455/455
(100 %)
0 diff
(100 %id)
CB154015 brain .g 1 to 559 1 to 559   tiling clone,   559/559
(100 %)
0 diff
(100 %id)
DA310158 hippocampus .g 88 to 683 2 to 597   tiling clone, capped   596/596
(100 %)
0 diff
(100 %id)
BQ082282 Ascites, stomach .g 681 to 1152 1 to 472   tiling clone,   472/472
(100 %)
1 diff
(99.8 %id)
BF839403 head_neck .g 770 to 895 141 to 16     Submitted on the opposite strand 126/141
(89 %)
0 diff
(100 %id)
AL708089 human skeletal muscle .g 814 to 1381 8 to 575   tiling clone,   568/575
(98 %)
6 diff
(99.0 %id)
CX785161 human embryonic stem cells .g 1228 to 1551 1 to 324   tiling clone,   324/325
(99 %)
2 diff
(99.4 %id)
DB215080 trachea .g 1422 to 1946 2 to 526   tiling clone, capped   525/525
(100 %)
1 diff
(99.9 %id)
AW195416 Kidney .g 1653 to 1876 224 to 1       224/224
(100 %)
0 diff
(100 %id)
DB081636 testis .g 1661 to 2215 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
BQ722159 sympathetic trunk .g 1860 to 2664 1 to 819   tiling clone,   819/887
(92 %)
20 diff
(97.8 %id)
AK125520 placenta .g 2133 to 5599 1 to 3468   tiling clone, available from FLJ,   3468/3468
(100 %)
1 diff
(100.0 %id)
DA851340 placenta .g 2134 to 2695 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
AI014284 brain, pooled frontal lobe .g 2486 to 2770 79 to 363     Submitted on the opposite strand 285/363
(78 %)
6 diff
(98.4 %id)
CN266574 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .g 3326 to 4087 3 to 765       763/765
(99 %)
6 diff
(99.3 %id)
AA355442   .g 3510 to 3839 1 to 332       332/370
(89 %)
7 diff
(98.2 %id)
AW953512   .g 3511 to 3962 1 to 452       452/454
(99 %)
10 diff
(97.8 %id)
AW206360   .g 3681 to 4032 1 to 352     Submitted on the opposite strand 352/352
(100 %)
3 diff
(99.2 %id)
AW206955   .g 3681 to 4109 1 to 429     Submitted on the opposite strand 429/429
(100 %)
4 diff
(99.1 %id)
AA935266 carcinoid, lung .g 3699 to 4053 1 to 356     Submitted on the opposite strand 356/356
(100 %)
6 diff
(98.4 %id)
AI701152 carcinoid, lung .g 3726 to 4208 1 to 483     Submitted on the opposite strand 483/483
(100 %)
2 diff
(99.6 %id)
AI459044 carcinoid, lung .g 3727 to 4100 1 to 375     Submitted on the opposite strand 375/375
(100 %)
6 diff
(98.4 %id)
AA961092 carcinoid, lung .g 3729 to 3958 1 to 230     Submitted on the opposite strand 230/230
(100 %)
0 diff
(100 %id)
AI733243 carcinoid, lung .g 3729 to 4148 1 to 420     Submitted on the opposite strand 420/420
(100 %)
0 diff
(100 %id)
AA987309 carcinoid, lung .g 3729 to 4160 1 to 432     Submitted on the opposite strand 432/432
(100 %)
0 diff
(100 %id)
BE045597 carcinoid, lung .g 3729 to 4025 1 to 297     Submitted on the opposite strand 297/297
(100 %)
3 diff
(99.0 %id)
BE551129 carcinoid, lung .g 3729 to 4222 1 to 494     Submitted on the opposite strand 494/494
(100 %)
0 diff
(100 %id)
BM272392 Pancreas, Purified pancreatic islet .g 3756 to 4264 1 to 509       509/509
(100 %)
3 diff
(99.5 %id)
BX092809 carcinoid, lung .g 3822 to 4510 689 to 1       689/689
(100 %)
0 diff
(100 %id)
CK824995 Pancreas, Purified pancreatic islet .g 3822 to 4337 1 to 516     Submitted on the opposite strand 516/516
(100 %)
1 diff
(99.9 %id)
CK824996 Pancreas, Purified pancreatic islet .g 3925 to 4472 553 to 6     Submitted on the opposite strand 548/553
(99 %)
0 diff
(100 %id)
AI793267 carcinoid, lung .g 3949 to 4498 568 to 19   AAA Submitted on the opposite strand 550/550
(100 %)
3 diff
(99.5 %id)
AI792937 carcinoid, lung .g 4014 to 4516 521 to 19     Submitted on the opposite strand 503/521
(96 %)
0 diff
(100 %id)
BM272186 Pancreas, Purified pancreatic islet .g 4043 to 4496 455 to 1       455/455
(100 %)
2 diff
(99.6 %id)
AA884050 pooled .g 4162 to 4500 339 to 1       339/339
(100 %)
1 diff
(99.8 %id)
DB349006 trachea .g 4335 to 4883 549 to 1       549/549
(100 %)
1 diff
(99.9 %id)
BF762674 colon_est .g 4376 to 4533 160 to 3     Submitted on the opposite strand 158/160
(98 %)
0 diff
(100 %id)
BE829909 lung_tumor .g 4409 to 4661 1 to 253       253/265
(95 %)
14 diff
(94.8 %id)
BQ181531 Knee, Osteoarthritic Cartilage .g 4810 to 5584 792 to 18   tiling clone, AAA Possibly primed on the genome, locally A rich (35/38 A in genome downstream of last aligned base) 775/775
(100 %)
0 diff
(100 %id)
DB328749 placenta .g 5046 to 5584 540 to 1       540/540
(100 %)
1 diff
(99.9 %id)
BC036694 Brain, hippocampus .h 1 to 3577 1 to 3578 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (21/23 A in genome downstream of last aligned base) 3578/3578
(100 %)
11 diff
(99.7 %id)
BI553195 brain, hippocampus .h 1 to 634 1 to 647   available from MGC,   647/649
(99 %)
27 diff
(95.9 %id)
TI_44170375   .h 5 to 634 121 to 763       643/765
(84 %)
26 diff
(96.7 %id)
CU444176 epidermis .h 589 to 999 9 to 419       411/422
(97 %)
6 diff
(98.6 %id)
CU444641 epidermis .h 589 to 999 414 to 4     Submitted on the opposite strand 411/422
(97 %)
0 diff
(100 %id)
CU448703 epidermis .h 589 to 999 414 to 4     Submitted on the opposite strand 411/422
(97 %)
0 diff
(100 %id)
CU452788 epidermis .h 589 to 999 9 to 419       411/422
(97 %)
6 diff
(98.6 %id)
CU454463 epidermis .h 589 to 999 9 to 419       411/422
(97 %)
8 diff
(98.2 %id)
CU454533 epidermis .h 589 to 999 414 to 4     Submitted on the opposite strand 411/422
(97 %)
0 diff
(100 %id)
AW893054 nervous_normal .h 1223 to 1540 325 to 8       318/325
(97 %)
0 diff
(100 %id)
BG741237 skin .h 2334 to 3317 1 to 987       987/989
(99 %)
6 diff
(99.4 %id)
BU590069 mixed (pool of 40 RNAs) .h 2342 to 2559 1 to 218   AAA Possibly primed on the genome, locally A rich (21/23 A in genome downstream of last aligned base) 218/218
(100 %)
2 diff
(99.1 %id)
CD244725 White Matter .h 2342 to 3097 10 to 772       763/953
(80 %)
25 diff
(97.4 %id)
CN296997 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .h 2349 to 2907 5 to 563       559/563
(99 %)
11 diff
(98.1 %id)
TI_57192137   .h 2365 to 3206 51 to 892       842/856
(98 %)
8 diff
(99.1 %id)
BI861200 breast, mammary adenocarcinoma, cell line .h 2366 to 3206 1 to 841       841/855
(98 %)
8 diff
(99.1 %id)
DR157971 human embryonic stem cells differentiated toan early endodermal cell type .h 2367 to 2874 1 to 507       507/507
(100 %)
3 diff
(99.5 %id)
BQ056121 lymph, lymphoma, cell line .h 2376 to 3045 1 to 681       681/1185
(57 %)
21 diff
(98.3 %id)
CN343365 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .h 2382 to 3062 1 to 681       681/681
(100 %)
1 diff
(99.9 %id)
BU535507 adenocarcinoma, cell line, breast .h 2408 to 2896 1 to 493       493/1110
(44 %)
31 diff
(97.3 %id)
N71593 nose, olfactory epithelium .h 2423 to 2704 1 to 284       284/285
(99 %)
4 diff
(98.6 %id)
BQ438135 leiomyosarcoma, uterus .h 2476 to 3321 1 to 858       858/879
(97 %)
19 diff
(97.9 %id)
BF345869 anaplastic oligodendroglioma with 1p/19qloss, brain .h 2480 to 3214 12 to 734       723/734
(98 %)
6 diff
(99.2 %id)
BF210703 bone marrow, from chronic myelogenous leukemia .h 2487 to 3024 259 to 795       537/860
(62 %)
53 diff
(93.9 %id)
AA360038 lung .h 2497 to 2795 1 to 301       301/307
(98 %)
7 diff
(97.8 %id)
BM822574 stomach .h 2529 to 3132 1 to 604       604/604
(100 %)
1 diff
(99.9 %id)
R51451 whole brain .h 2531 to 2776 1 to 247       247/250
(98 %)
5 diff
(98.0 %id)
BX463437 adult brain, brain .h 2540 to 3531 988 to 8   tiling clone,   981/988
(99 %)
0 diff
(100 %id)
BG823349 adenocarcinoma cell line, colon .h 2544 to 3394 1 to 851       851/852
(99 %)
11 diff
(98.8 %id)
BG696425 skin .h 2551 to 3437 1 to 901       901/1017
(88 %)
38 diff
(96.3 %id)
BM822475 stomach .h 2557 to 3129 1 to 573       573/573
(100 %)
1 diff
(99.9 %id)
BG741136 skin .h 2570 to 3424 1 to 850       850/850
(100 %)
18 diff
(97.9 %id)
BU857482 adenocarcinoma, cell line, breast .h 2584 to 3488 1 to 922       922/923
(99 %)
6 diff
(99.4 %id)
AI910259 breast .h 2605 to 2953 366 to 18       349/367
(95 %)
0 diff
(100 %id)
BE077265 breast .h 2605 to 2910 21 to 324       304/324
(93 %)
10 diff
(97.0 %id)
BP317669 pericardium .h 2622 to 3203 1 to 583       583/583
(100 %)
3 diff
(99.5 %id)
BM707158 eye, eye anterior segment .h 2646 to 3393 9 to 755       747/756
(98 %)
2 diff
(99.8 %id)
BQ064668 lymph, lymphoma, cell line .h 2649 to 3546 1 to 907       907/984
(92 %)
16 diff
(98.4 %id)
BQ647752 hepatocellular carcinoma, cell line, Liver .h 2649 to 3406 1 to 763       763/945
(80 %)
25 diff
(97.4 %id)
H25796 breast .h 2658 to 3043 1 to 387       387/387
(100 %)
6 diff
(98.5 %id)
CV571543 cornea, eye .h 2659 to 3169 1 to 511       511/511
(100 %)
1 diff
(99.9 %id)
BF807501 colon_ins .h 2695 to 2999 25 to 329       305/329
(92 %)
9 diff
(97.3 %id)
TI_149302194   .h 2697 to 3568 941 to 79   AAA Possibly primed on the genome, locally A rich (21/23 A in genome downstream of last aligned base) 863/949
(90 %)
17 diff
(98.3 %id)
BM791954 Ascites, stomach .h 2698 to 3112 1 to 415       415/586
(70 %)
5 diff
(99.2 %id)
BG394043 eye, retinoblastoma .h 2699 to 3385 1 to 709       709/931
(76 %)
35 diff
(96.3 %id)
BP197283 adrenal gland .h 2726 to 3309 1 to 583       583/583
(100 %)
2 diff
(99.7 %id)
BX351392 Placenta Cot 25-normalized .h 2784 to 3562 777 to 1       777/864
(89 %)
36 diff
(95.9 %id)
AW360850 colon .h 2788 to 3341 578 to 25       554/579
(95 %)
0 diff
(100 %id)
BF690067 melanotic melanoma, high MDR (cell line), skin .h 2790 to 3425 695 to 34       662/995
(66 %)
0 diff
(100 %id)
TI_149299674   .h 2813 to 3582 874 to 113   AAA Possibly primed on the genome, locally A rich (21/23 A in genome downstream of last aligned base) 762/915
(83 %)
11 diff
(98.8 %id)
BM980436 lung, Primary Lung Cystic Fibrosis EpithelialCells .h 2829 to 3568 758 to 19   AAA Possibly primed on the genome, locally A rich (21/23 A in genome downstream of last aligned base) 740/740
(100 %)
1 diff
(99.9 %id)
AV726707 hypothalamus .h 2847 to 3570 727 to 5     Submitted on the opposite strand 723/727
(99 %)
0 diff
(100 %id)
BM665889 eye, fetal eyes .h 2852 to 3565 732 to 19   AAA Possibly primed on the genome, locally A rich (21/23 A in genome downstream of last aligned base) 714/714
(100 %)
0 diff
(100 %id)
AW862152 colon .h 2853 to 3358 508 to 2       507/508
(99 %)
0 diff
(100 %id)
BE073395 breast .h 2853 to 3336 634 to 156     Submitted on the opposite strand 479/636
(75 %)
0 diff
(100 %id)
BF350928 head_neck .h 2858 to 3336 651 to 173       479/651
(73 %)
0 diff
(100 %id)
BE159456 head_neck .h 2879 to 3336 612 to 155     Submitted on the opposite strand 458/621
(73 %)
0 diff
(100 %id)
EC497058 Prostate .h 2885 to 2988 1 to 100       100/100
(100 %)
3 diff
(97.0 %id)
BM975973 lung, Primary Lung Cystic Fibrosis EpithelialCells .h 2897 to 3582 704 to 19   AAA Possibly primed on the genome, locally A rich (21/23 A in genome downstream of last aligned base) 686/686
(100 %)
0 diff
(100 %id)
CA308247 Alveolar Macrophage, lung .h 2907 to 3565 677 to 19   AAA Possibly primed on the genome, locally A rich (21/23 A in genome downstream of last aligned base) 659/659
(100 %)
0 diff
(100 %id)
BQ447105 Knee, Osteoarthritic Cartilage .h 2939 to 3569 649 to 19   AAA Possibly primed on the genome, locally A rich (21/23 A in genome downstream of last aligned base) 631/631
(100 %)
0 diff
(100 %id)
BE839417 prostate_normal .h 2967 to 3138 1 to 173       173/182
(95 %)
10 diff
(94.6 %id)
BF373283 prostate_tumor .h 2986 to 3347 384 to 23       362/384
(94 %)
0 diff
(100 %id)
EC539550 Prostate .h 2998 to 3090 93 to 1       93/93
(100 %)
0 diff
(100 %id)
EC480310 Prostate .h 3010 to 3101 1 to 92       92/95
(96 %)
1 diff
(99.0 %id)
EC581781 Prostate .h 3010 to 3101 1 to 92       92/95
(96 %)
1 diff
(99.0 %id)
W19606.
matches multiple genes
parathyroid gland, parathyroid tumor .h 3024 to 3577 1 to 558   AAA Possibly primed on the genome, locally A rich (21/23 A in genome downstream of last aligned base), also hits gene ATP5H 558/558
(100 %)
7 diff
(98.8 %id)
BE301105 Kidney, renal cell adenocarcinoma .h 3047 to 3569 539 to 17   AAA Possibly primed on the genome, locally A rich (21/23 A in genome downstream of last aligned base) 523/523
(100 %)
2 diff
(99.7 %id)
TI_151739515   .h 3048 to 3565 619 to 101   AAA Possibly primed on the genome, locally A rich (21/23 A in genome downstream of last aligned base) 519/1113
(46 %)
45 diff
(96.0 %id)
BM687295 eye, optic nerve .h 3055 to 3417 9 to 371       363/371
(97 %)
6 diff
(98.4 %id)
BF446277 Prostate .h 3063 to 3582 531 to 12   AAA Possibly primed on the genome, locally A rich (21/23 A in genome downstream of last aligned base) 520/520
(100 %)
0 diff
(100 %id)
BI262220 lymph, lymphoma, cell line .h 3069 to 3492 446 to 22       425/446
(95 %)
0 diff
(100 %id)
AW418817 2 pooled tumors (clear cell type), Kidney .h 3075 to 3577 507 to 5       503/507
(99 %)
0 diff
(100 %id)
AW003619 brain, four pooled pituitary adenomas .h 3086 to 3577 495 to 4       492/495
(99 %)
0 diff
(100 %id)
CB123545 Liver .h 3091 to 3565 495 to 21   AAA Submitted on the opposite strand 475/475
(100 %)
0 diff
(100 %id)
BF773032 epid_tumor .h 3096 to 3233 138 to 1     Submitted on the opposite strand 138/138
(100 %)
0 diff
(100 %id)
BE672523 carcinoid, lung .h 3097 to 3577 491 to 11   AAA Possibly primed on the genome, locally A rich (21/23 A in genome downstream of last aligned base) 481/481
(100 %)
0 diff
(100 %id)
DB553060 hippocampus .h 3101 to 3559 1 to 459     Submitted on the opposite strand 459/459
(100 %)
0 diff
(100 %id)
DB549374 hippocampus .h 3108 to 3569 1 to 462     Submitted on the opposite strand 462/462
(100 %)
1 diff
(99.8 %id)
BM149610 leukopheresis .h 3111 to 3559 466 to 17   AAA Possibly primed on the genome, locally A rich (21/23 A in genome downstream of last aligned base) 450/450
(100 %)
7 diff
(98.5 %id)
DB526511 testis .h 3114 to 3565 1 to 452     Submitted on the opposite strand 452/452
(100 %)
0 diff
(100 %id)
DB543640 hippocampus .h 3118 to 3575 1 to 458     Submitted on the opposite strand 458/460
(99 %)
2 diff
(99.6 %id)
BE909817 epithelioid carcinoma, Pancreas .h 3118 to 3577 1 to 462   AAA Possibly primed on the genome, locally A rich (21/23 A in genome downstream of last aligned base) 462/462
(100 %)
2 diff
(99.6 %id)
AI697801 carcinoid, lung .h 3122 to 3577 462 to 7       456/462
(98 %)
0 diff
(100 %id)
BF540929 hypernephroma, Kidney .h 3127 to 3565 1 to 441   AAA Possibly primed on the genome, locally A rich (21/23 A in genome downstream of last aligned base) 441/441
(100 %)
4 diff
(99.1 %id)
N23638 nose, olfactory epithelium .h 3128 to 3570 450 to 2       449/454
(98 %)
0 diff
(100 %id)
BE208094 Kidney, renal cell adenocarcinoma .h 3128 to 3569 458 to 17   available from MGC, AAA Possibly primed on the genome, locally A rich (21/23 A in genome downstream of last aligned base) 442/442
(100 %)
0 diff
(100 %id)
BF108425 carcinoid, lung .h 3129 to 3577 459 to 11   AAA Possibly primed on the genome, locally A rich (21/23 A in genome downstream of last aligned base) 449/449
(100 %)
0 diff
(100 %id)
AW301720 Kidney .h 3131 to 3566 443 to 8       436/443
(98 %)
0 diff
(100 %id)
CB048951 Prostate .h 3133 to 3569 10 to 446   AAA Possibly primed on the genome, locally A rich (21/23 A in genome downstream of last aligned base) 437/446
(97 %)
6 diff
(98.7 %id)
DB537584 hippocampus .h 3137 to 3565 1 to 426     Submitted on the opposite strand 426/426
(100 %)
8 diff
(98.2 %id)
AI969149 brain, four pooled pituitary adenomas .h 3138 to 3577 440 to 1       440/440
(100 %)
0 diff
(100 %id)
CB050907 Prostate .h 3138 to 3566 10 to 438       429/440
(97 %)
1 diff
(99.8 %id)
BF111388 carcinoid, lung .h 3138 to 3577 448 to 11   AAA Possibly primed on the genome, locally A rich (21/23 A in genome downstream of last aligned base) 438/438
(100 %)
3 diff
(99.4 %id)
BQ005245 Chondrosarcoma, Left Pelvis .h 3150 to 3577 446 to 19   AAA Possibly primed on the genome, locally A rich (21/23 A in genome downstream of last aligned base) 428/428
(100 %)
0 diff
(100 %id)
DB532600 hippocampus .h 3152 to 3575 1 to 422     Submitted on the opposite strand 422/424
(99 %)
13 diff
(97.0 %id)
T87882 liver and spleen .h 3162 to 3557 399 to 1       399/399
(100 %)
3 diff
(99.3 %id)
BQ333013 lung_tumor .h 3164 to 3570 24 to 424       401/430
(93 %)
36 diff
(91.7 %id)
AW612712 carcinoid, lung .h 3164 to 3577 420 to 7       414/420
(98 %)
0 diff
(100 %id)
TI_153949350   .h 3166 to 3566 79 to 479       401/405
(99 %)
1 diff
(99.8 %id)
R39999 whole brain .h 3169 to 3575 450 to 23   AAA Possibly primed on the genome, locally A rich (21/23 A in genome downstream of last aligned base) 428/431
(99 %)
27 diff
(93.8 %id)
BX280805 testis .h 3176 to 3565 437 to 48   AAA Submitted on the opposite strand 390/390
(100 %)
0 diff
(100 %id)
FN116805 breast carcinoma .h 3196 to 3278 84 to 1     Submitted on the opposite strand 84/85
(98 %)
1 diff
(98.9 %id)
AA889907 parathyroid gland, parathyroid tumor .h 3204 to 3577 386 to 13       374/386
(96 %)
0 diff
(100 %id)
AW082596 colon, moderately differentiated adenocarcinoma .h 3207 to 3565 361 to 1       361/361
(100 %)
2 diff
(99.5 %id)
AA349693 brain .h 3215 to 3565 352 to 1       352/352
(100 %)
1 diff
(99.8 %id)
EC512934 Prostate .h 3227 to 3321 97 to 1       97/104
(93 %)
5 diff
(95.2 %id)
BU594532 mixed (pool of 40 RNAs) .h 3234 to 3565 1 to 332       332/982
(33 %)
2 diff
(99.8 %id)
AA860167   .h 3248 to 3575 332 to 5       328/332
(98 %)
0 diff
(100 %id)
BF593061 Kidney .h 3251 to 3566 318 to 3       316/318
(99 %)
0 diff
(100 %id)
AI668892 Prostate .h 3254 to 3569 353 to 38   AAA Possibly primed on the genome, locally A rich (21/23 A in genome downstream of last aligned base) 316/316
(100 %)
18 diff
(94.4 %id)
AI364176 serous papillary carcinoma, high grade, 2pooled tumors, uterus .h 3291 to 3577 287 to 1       287/290
(98 %)
0 diff
(100 %id)
AA640793 alveolar rhabdomyosarcoma .h 3295 to 3559 287 to 23       265/287
(92 %)
0 diff
(100 %id)
AW016249   .h 3324 to 3565 259 to 18   AAA Possibly primed on the genome, locally A rich (21/23 A in genome downstream of last aligned base) 242/252
(96 %)
0 diff
(100 %id)
EC457998 Prostate .h 3332 to 3427 1 to 98       98/98
(100 %)
7 diff
(92.9 %id)
EC574380 Prostate .h 3333 to 3426 1 to 92       92/92
(100 %)
4 diff
(95.7 %id)
EC492281 Prostate .h 3334 to 3427 1 to 94       94/94
(100 %)
0 diff
(100 %id)
EC536117 Prostate .h 3334 to 3427 1 to 92       92/92
(100 %)
2 diff
(97.9 %id)
AI700434 colon .h 3334 to 3577 246 to 3       244/246
(99 %)
0 diff
(100 %id)
AI076309 liver and spleen .h 3340 to 3566 232 to 6       227/232
(97 %)
0 diff
(100 %id)
EC516265 Prostate .h 3341 to 3440 1 to 98       98/101
(97 %)
3 diff
(97.1 %id)
EC575797 Prostate .h 3343 to 3440 1 to 98       98/101
(97 %)
1 diff
(99.1 %id)
U90730   .h 3345 to 3514 170 to 3       168/171
(98 %)
0 diff
(100 %id)
H05971 whole brain .h 3424 to 3575 175 to 23   AAA Possibly primed on the genome, locally A rich (21/23 A in genome downstream of last aligned base) 153/153
(100 %)
2 diff
(98.7 %id)
AK308779 amygdala .i 1 to 957 1 to 957   tiling clone,   957/957
(100 %)
1 diff
(99.9 %id)
DC318370 amygdala .i 1 to 579 1 to 579       579/579
(100 %)
0 diff
(100 %id)
DC350525 brain .i 2 to 554 1 to 553       553/554
(99 %)
2 diff
(99.7 %id)
AK304176 trachea .i 7 to 1235 1 to 1229 F150L tiling clone,   1229/1229
(100 %)
3 diff
(99.8 %id)
DC416652 trachea .i 7 to 579 1 to 573       573/573
(100 %)
1 diff
(99.9 %id)
DA357450 subthalamic nucleus .j 1 to 554 2 to 555 exact tiling clone, capped   554/554
(100 %)
0 diff
(100 %id)
AW027407 thymus, pooled .k 1 to 507 517 to 11   tiling clone, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 507/517
(98 %)
0 diff
(100 %id)
AK123245 amygdala .k 30 to 2042 1 to 2013 exact tiling clone, available from FLJ,   2013/2013
(100 %)
2 diff
(100.0 %id)
DA171103 amygdala .k 31 to 561 2 to 533   capped   532/532
(100 %)
2 diff
(99.7 %id)
DB302592 amygdala .k 1473 to 2042 570 to 1       570/570
(100 %)
0 diff
(100 %id)
DA441531 tongue, tumor tissue .l 1 to 577 2 to 578 exact tiling clone, capped   577/577
(100 %)
0 diff
(100 %id)
DA805171 brain .m-u 1 to 655 2 to 656 C36Y tiling clone, capped   655/655
(100 %)
1 diff
(99.9 %id)
DA160448 amygdala .m-u 273 to 841 2 to 570 exact tiling clone, capped   569/569
(100 %)
0 diff
(100 %id)
DA162654 amygdala .n 1 to 484 2 to 485 exact tiling clone, capped   484/484
(100 %)
3 diff
(99.4 %id)
DA403732 thalamus Gene AACS, variant not shown       capped This clone was ignored    
DA889124   Gene AACS, variant not shown       capped Suspected internal deletion, this clone was ignored    
AU149480   Gene AACS, variant not shown         Suspected internal deletion, this clone was ignored    
AU125917   Gene AACS, variant not shown       capped Suspected internal deletion, this clone was ignored    
DB318519   Gene AACS, variant not shown         This clone was ignored    
DA557456   Gene AACS, variant not shown       capped This clone was ignored    
DB309886 hippocampus Gene AACS, variant not shown         This clone was ignored    
DA336170 hippocampus Gene AACS, variant not shown       capped This clone was ignored    
DA454732 tongue, tumor tissue Gene AACS, variant not shown       capped Suspected internal deletion, this clone was ignored    
AI783692 Prostate Gene AACS, variant not shown       AAA Suspected internal deletion, this clone was ignored    
BE250349 muscle, rhabdomyosarcoma Gene AACS, variant not shown         This clone was ignored    
BE250727 muscle, rhabdomyosarcoma Gene AACS, variant not shown         This clone was ignored    
BF476374 Prostate Gene AACS, variant not shown       AAA Suspected internal deletion, this clone was ignored    
BG698575 skin Gene AACS, variant not shown         This clone was ignored    
BG825902 muscle, rhabdomyosarcoma Gene AACS, variant not shown         This clone was ignored    
DB161576 thymus Gene AACS, variant not shown       capped Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m-u, .n Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C