Arabidopsis thaliana gene AT1G47710, encoding (ATSERPIN1); cysteine protease inhibitor/ serine-type endopeptidase inhibitor.
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SUMMARY back to top
TAIR annotates one representative transcript.

AceView synopsis, each blue text links to tables and details
According to AceView, this gene is expressed at high level, 1.6 times the average gene in this release. The sequence of this gene is defined by 60 GenBank accessions from 57 cDNA clones, some from mixture of silique and flower (seen 10 times), root (9), adult vegetative tissue (4), aerial (4), flower, leaf and root (4), roots (4), aboveground organs (2) and 8 other tissues.
The gene contains 1 gt-ag intron. Transcription produces one mRNA.
Function: There is one article specifically referring to this gene in PubMed. Proteins are expected to have molecular functions (cysteine protease inhibitor activity, serine-type endopeptidase inhibitor activity) and to localize in various compartments (apoplast, endoplasmic reticulum membrane). No phenotype has yet been reported to our knowledge: this gene's in vivo function is yet unknown.
Please see the Arabidopsis TAIR site TAIR:AT1G47710 for in depth functional annotation of this gene.
The spliced mRNA putatively encodes a good protein, containing Protease inhibitor I4, serpin domain [Pfam], some transmembrane domains [Psort2].

Please quote: AceView: a comprehensive cDNA-supported gene and transcripts annotation, Genome Biology 2006, 7(Suppl 1):S12.
Map on chromosome 1, links to other databases and other names
Map: This gene AT1G47710 maps on chromosome 1. In AceView, it covers 2.09 kb, from 17560649 to 17562737 (NCBI 7_1, April 2007), on the direct strand.
Links to: manual annotations from TAIR:AT1G47710, the SNP view, gene overviews from Entrez Gene 841182, expression data from UniGene.
Other names: The gene is also known as AT1G47710, ATSERPIN1, SERPIN1 or T2E6.22, LOC841182. It has been described as (ATSERPIN1); cysteine protease inhibitor/ serine-type endopeptidase inhibitor.
Closest AceView homologs in other species ?
The closest human genes, according to BlastP, are the AceView genes SERPINC1 (e=2 10-40), SERPINB2andSERPINB10 (e=3 10-39), SERPINB9 (e=5 10-36).
The closest mouse genes, according to BlastP, are the AceView genes Serpinc1 (e=7 10-41), Serpinb1a (e=7 10-39), Serpinb1b (e=8 10-38), Serpinb3b (e=2 10-37), Serpinb9g (e=4 10-37), Serpinb1c (e=5 10-37), Serpinb9f (e=5 10-37), Serpinb9e (e=7 10-37), Serpinb10 (e=10-36), Serpinb3a (e=3 10-35).
The closest C.elegans genes, according to BlastP, are the AceView/WormGenes srp-3 (e=3 10-32), srp-7 (e=2 10-31), srp-2 (e=5 10-31), which may contain interesting functional annotation
          Complete gene on genome diagram: back to top
Please choose between the zoomable GIF version., and the HTML5/SVG version.
This diagram shows in true scale the gene on the genome, the mRNAs and the cDNA clones.
Compact gene diagram back to top
Gene AT1G47710 5' 3' encoded on plus strand of chromosome 1 from 17,560,649 to 17,562,737 a [NM] 100 200bp 0 452 bp exon 452 bp exon 615 bp [gt-ag] intron 16 GenBank accessions 1022 bp exon 57 accessions, NM_103664 some from mixture of silique and flower (seen 10 times) root (9), adult vegetative tissue (4) aerial (4), flower, leaf and root (4) Validated 3' end, 3 accessions 1022 bp exon Alternative mRNAs are shown aligned from 5' to 3' on a virtual genome where introns have been shrunk to a minimal length. Exon size is proportional to length, intron height reflects the number of cDNAs supporting each intron, the small numbers show the support of the introns in deep sequencing (with details in mouse-over) . Introns of the same color are identical, of different colors are different. 'Good proteins' are pink, partial or not-good proteins are yellow, uORFs are green. 5' cap or3' poly A flags show completeness of the transcript.
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Sequences: click on the numbers to get the DNA back to top
mRNA variant mRNA matching the genome Best predicted protein 5' UTR 3' UTR Upstream sequence Transcription
unit
pre-mRNA
Downstream sequence
aOct08 1474 bp 391 aa 62 bp 236 bp 2kb probably including promoter 2089 bp 1kb

Gene neighbors and Navigator on chromosome 1 back to top
C R P AT1G47565 C C P AT1G47570 C R AT1G47580 C AT1G47600 C AT1G47610 C AT1G47655 C P C R AT1G47680 C AT1G47710 C P AT1G47740 C R AGL102 C P AT1G47770 C AT1G47780 C R AT1G47786 C AT1G47800 C AT1G47810 C AT1G47813 C AT1G47820 C ATE2F2/ATE2FC/E2FC C R P AT1G47890 C P AT1G47915 AT1G47690 AT1G47700 P C P ATPUP19 C C CYP96A8 C AT1G47625 C AT1G47640 C C AT1G47660 C AT1G47670 D C P OSB1 C AT1G47730 C R P PEX11A C AT1G47765 C AT1G47790 C AT1G47830 C P AT1G47840 C AT1G47860 C Transposase_11.4 C P AT1G47885 C AT1G47900 10 20kb 0 AT1G47550andAT1G47560 21 accessions, 3 variants AT1G47565, 4 accessions ludar, 34 accessions AT1G47570, 19 accessions 3 variants AT1G47580, 8 accessions AT1G47600, 21 accessions AT1G47610, 3 accessions AT1G47655, 3 accessions leedar, 6 accessions snerfaw, 4 accessions AT1G47680, 1 accession AT1G47710, 57 accessions AT1G47740, 64 accessions 2 variants AGL102, 6 accessions AT1G47770, 1 accession AT1G47780, 15 accessions 3 variants AT1G47786, 1 accession AT1G47800, 1 accession AT1G47810, 8 accessions AT1G47813, 1 accession AT1G47820, 18 accessions 2 variants ATE2F2/ATE2FC/E2FC, 15 accessions AT1G47890, 1 accession lydar, 1 accession lawdar, 1 accession snawfaw, 20 accessions AT1G47690, 2 accessions AT1G47700, 2 accessions sneyfaw, 2 accessions leydar, 1 accession snorfaw, 1 accession loydar, 6 accessions snarfaw, 1 accession lerdar, 3 accessions lordar, 1 accession lodar, 2 accessions ATPUP19, 1 accession lardar, 1 accession CYP96A8, 6 accessions AT1G47625, 15 accessions AT1G47640, 85 accessions sneefaw, 1 accession AT1G47660, 6 accessions 2 variants AT1G47670, 48 accessions OSB1, 7 accessions AT1G47730, 1 accession PEX11A, 14 accessions AT1G47765, 1 accession AT1G47790, 1 accession AT1G47830, 55 accessions AT1G47840, 14 accessions AT1G47860, 15 accessions 2 variants Transposase_11.4, 18 accessions AT1G47885, 5 accessions 2 variants AT1G47900, 17 accessions ZOOM IN                D:disease,C:conserved,I:interactions,R:regulation,P:publications         Read more...
Annotated mRNA diagrams back to top
Bibliography:               1 article in PubMed back to top
? Gene Summary Gene on genome mRNA Expression Tissue Function, regulation, related genes C

To mine knowledge about the gene, please click the 'Gene Summary' or the 'Function, regulation, related genes ' tab at the top of the page. The 'Gene Summary' page includes all we learnt about the gene, functional annotations of neighboring genes, maps, links to other sites and the bibliography. The 'Function, regulation, related genes ' page includes Diseases (D), Pathways, GO annotations, conserved domains (C), interactions (I) reference into function, and pointers to all genes with the same functional annotation.
To see the mRNA diagram, sequence and annotation, click the 'mRNA' tab. To examine expression data from all cDNAs clustered in this gene by AceView, click the 'Expression tissue'.

If you know more about this gene, or found errors, please share your knowledge. Thank you !