The home page of the International Committee on Taxonomy of  VirusesICTVdB Home PageICTVdB Index of Viruses, species lists for all virus Families and GeneraICTVdB virus descriptions automatically generated from ICTVdB databaseICTVdB character list, the underlying questionnaire used to build the virus descriptionsICTVdB Picture Gallery avisual entry point to the virus descriptionsICTVdB virus identification and data retrival tool.  To use this tool, download the freely available software as described.The online data entry tool can be used by everyone to provided data to ICTVdB by clicking on check boxes for the appropriate choises presented in the questionnaireHome Page of DELTA, the software that is driving the databaseThe ICTVdB Management,Description of the origin and functions of the ICTVdB databaseA tuturial to learn how to find your way around and of how to use the different outputs from the database displayed on the web.


ICTVdB Tutorial
Decimal Code Structure

Database Coding Structure The ICTVdB is similar in structure to a library catalog, which uses the Dewey Decimal Classification System (DDS). The DDS is a general knowledge organization tool that is continuously revised to keep pace with knowledge.

Dewey Decimal Library Catalog DDS Features
  • Classifies books in 10 categories, which covers the entire world of knowledge.
  • Identifies topics and sub-topics within the categories through a hierarchy of numerals.
    Example:600  Technology (Applied Sciences)
       630  Agriculture and related technologies
         636   Animal Husbandry
           636.7   Dogs
           636.8   Cats
  • Allows multiple access paths-by subject, author, title, etc.
  • Allows a user can branch to other links or related topics.

A distinctive feature of the ICTVdB is its decimal code, which is analogous to a library catalog using the DDS.

ICTVdB Decimal Code Features
  • Facilitates a clear, unambiguous identification of a virus.
  • Allows for revisions in taxonomic information to be incorporated without disruption of the database structure.
  • Serves as a file name when transferring ICTVdB outputs to the web.
  • Serves as an access number for other external biological databases to link to the ICTVdB.

Decimal Code Components The 19-digit ICTVdB decimal code allows for unique identification of a virus. The identification taxonomic structure is:

Component
Definition
OrderA class of biological entities grouped according to natural characteristics or relationships. (Webster's Dictionary)

Groupings of families of viruses that share common characteristics and are distinct from other orders and families. The suffix-virales identifies an order. (ICTV)
Family/SubfamilyA group of related viruses usually made up of several to many genera. (Webster's Dictionary)

Groupings of genera of viruses that share common characteristics and are distinct from the member viruses of other families. The suffix-viridae identifies a family. The suffix-virinae identifies a sub-family. (ICTV)
Genus/SubgenusA class or group marked by common characteristics. A genus is made up of structurally related species or an isolated species, which has unusual, differentiating characteristics. (Webster's Dictionary)

Groupings of species of viruses that share common characteristics are distinct from the member viruses of other genera. The suffix-virus identifies virus genera. (ICTV)
Species/SubspeciesA single lineage of ancestor-descendant populations that maintains its identity from other such lineages and has its own evolutionary tendencies and historical fate. (Wiley)

A polythetic class of viruses that constitutes a replicating lineage and occupies a particular ecological niche. (ICTV-van Regenmortel)
SerotypeA group of intimately related organisms distinguished by a common set of antigens. (Webster's Dictionary)
StrainA group that is distributed to a particular host or to a specific geography.
IsolateA viral population that has resulted from being isolated from a host or the environment. A virus clone derived from a virus population can also be designated as an isolate.

Decimal Code Structure Example The following example illustrates the structure of the ICTVdB decimal code.

Order 01. Mononegavirales
Family   01.025. Filoviridae
  01.062. Rhabdoviridae
  01.081. Bornaviridae
  01.048. Paramyxoviridae
Subfamily     01.048.1. Paramyxovirinae
Genus       01.048.1.01. Respirovirus
      01.048.1.02. Morbillivirus
      01.048.1.03. Rubulavirus
Type Species         01.048.1.02.0.001. Measles virus

The taxonomy governed by the ICTV is concerning itself down to the species level. However, the ICTVdB will eventually include the lower levels (subspecies, strain, isolate, etc.) because they are very important for exact identification.


Next:  Index of Viruses
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Contact Cornelia Büchen-Osmond.

Tutorial by Vic Kuehnert
Web Page by Angel Morrow
 
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