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References (VIIIth ICTV Report)

Boeke, J.D. and Sandmeyer, S.B. (1991). “Yeast transposable elements”. In: Broach, J., Jones, E. and Pringle J (eds). The molecular and cellular biology of the yeast Saccharomyces. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, vol 1, pp 193–261.

Boeke, J.D. and Stoye, J.P. (1997). Retrotransposons, endogenous retroviruses, and the evolution of retroelements. In “Retroviruses”, H. Varmus, S. Hughes and J. Coffin, eds. (Cold Spring Harbor, N.Y.: Cold Spring Harbor Laboratory), pp. 343–435.

Burns, N.R., Saibil, H.R., White, N.S., Pardon, J.F., Timmins, P.A., Richardson, S.M.H., Richards, B.M., Adams, S.E., Kingsman, S.M. and Kingsman, A.J. (1992). Symmetry, flexibility and permeability in the structure of yeast retrotransposon virus-like particles. EMBO J., 11, 1155–1164.

Doolittle, R.F., Feng, D.F., Johnson, M.S. and McClure, M.A. (1989). Origins and evolutionary relationships of retroviruses. Quart. Rev. Biol., 64, 1–30.

Eichinger, D.J. and Boeke, J.D. (1988). The DNA intermediate in yeast Ty1 element transposition copurifies with virus-like particles: cell-free Ty1 transposition. Cell 54, 955–966.

Gao, X., Havecker, E.R., Baranov, P.V., Atkins, J.F. and Voytas, D.F. (2003). Translational recoding signals between gag and pol in diverse LTR retrotransposons. RNA, 9, 1430-1422.

Garfinkel, D.J., Boeke, J.D. and Fink, G.R. (1985). Ty element transposition: reverse transcriptase and virus-like particles. Cell, 42, 507–517.

Havecker, E.R. and Voytas, D.F. (2003). The soybean retroelement SIRE1 uses stop codon suppression to express its envelope-like protein. EMBO Rep., 4, 274-277.

Kikuchi, Y., Ando, Y. and Shiba, T. (1986). Unusual priming mechanism of RNA-directed DNA synthesis in copia retrovirus-like particles of Drosophila. Nature, 323, 824–826.

Kim, J.M., Vanguri, S., Boeke, J.D., Gabriel, A. and Voytas, D.F. (1998). Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res., 8, 464-478.

Kumar, A. and Bennetzen, J.L. (2000). Plant retrotransposons. Annu. Rev. Genet., 33, 479-532.

Laten, H.M., Majumdar, A. and Gaucher, E.A. (1998). SIRE-1, a copia/Ty1-like retroelement from soybean, encodes a retroviral envelope-like protein. Proc. Natl. Acad. Sci. USA, 95, 6897-902.

Mellor, J., Malim, M.H., Gull, K., Tuite, M.F., McCready, S., Dibbayawan, T., Kingsman, S.M. and Kingsman, A.J. (1985). Reverse transcriptase activity and Ty RNA are associated with virus-like particles in yeast. Nature, 318, 583–586.

Palmer, K.J., Tichelaar, W., Myers, N., Burns, N.R., Butcher, S.J., Kingsman, A.J., Fuller, S.D. and Saibil, H.R. (1997). Cryo-electron microscopy structure of yeast Ty retrotransposon virus- like particles. J. Virol., 71, 6863–6868.

Voytas, D.F. and Boeke, J.D. (2002). Ty1 and Ty5. In: Mobile DNA II (N. Craig, ed), pp 631-662. American Society for Microbiology, Washington, D.C.

Voytas, D.F., Cummings, M.P., Konieczny, A., Ausubel, F.M. and Rodermel SR (1992). Copia-like retrotransposons are ubiquitous among plants. Proc. Natl. Acad. Sci. USA, 89, 7124–7128.

Xiong, Y. and Eickbush, T.H. (1990). Origin and evolution of retroelements based on their reverse transcriptase sequences. EMBO J., 9, 3353–3362.

Zou, S., Ke, N., Kim, J.M. and Voytas, D.F. (1996). The Saccharomyces retrotransposon Ty5 integrates preferentially into regions of silent chromatin at the telomeres and mating loci. Genes Dev., 10, 634–645.

Contributed by

Boeke JD, Eickbush T, Sandmeyer SB, and Voytas DF

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