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References (VIIIth ICTV Report)

Angell, S.M., Davies, C. and Baulcombe, D.C. (1996). Cell-to-cell movement of potato virus X is associated with a change in the size-exclusion limit of plasmodesmata in trichome cells of Nicotiana clevelandii. Virology, 216, 197-201.

Batten, J.S., Yoshinari, Y and Hemenway, C. (2003). Potato virus X: a model system for virus replication, movement and gene expression. Mol. Plant Pathol., 4, 125-131.

Calvert, L.A., Cuervo, M.I., Ospino, M.D., Fauquet, C.M. and Ramirez, B.-C. (1996). Characterization of cassava common mosaic virus and a defective RNA species. J. Gen. Virol., 77, 525-530.

Chen, J., Zheng, H.Y., Chen, J.P. and Adams, M.J. (2002). Characterisation of a potyvirus and a potexvirus from Chinese scallion. Arch. Virol., 147, 683-693.

Davenport, W.F. and Baulcombe, D.C. (1997). Mutation of the GKS motif of the RNA-dependent RNA polymerase from potato virus X disables or eliminates virus replication. J. Gen. Virol., 78, 1247-1251.

Geering, A.D. and Thomas, J.E. (1999). Characterisation of a virus from Australia that is closely related to papaya mosaic potexvirus. Arch. Virol., 144, 577-592.

Hefferon, K.L., Doyle, S. and AbouHaidar, M.G. (1997). Immunological detection of the 8K protein of potato virus X (PVX) in cell walls of PVX-infected tobacco and transgenic potato. Arch. Virol., 142, 425-433.

Hefferon, K.L., Khalilian, H., Xu, H. and AbouHaidar, M.G. (1997). Expression of the coat protein of Potato virus X from a dicistronic mRNA in transgenic potato plants. J Gen. Virol., 78, 3051-3059.

Kalinina, N.O., Fedorkin, O.N., Samuilova, O.V., Maiss, E., Korpela, T., Morozov, S.Y. and Atebekov, J.G. (1996). Expression and biochemical analysis of the recombinant potato virus X 25K movement protein. FEBS Lett., 397, 75-78.

Kavanagh, T., Goulden, M., Santa Cruz, S., Chapman, S., Barker, 1. and Baulcombe, D. (1992). Molecular analysis of a resistance-breaking strain of potato virus X. Virology, 189, 609-617.

Kim, K.-H. and Hemenway, C. (1997). Mutations that alter a conserved element upstream of the potato virus X triple block and coat protein genes affect subgenomic RNA accumulation. Virology, 232, 187-197.

Lambrecht, S. and Jelkmann, W. (1997). Infectious cDNA clone used to identify strawberry mild yellow edgeassociated potexvirus as causal agent of the disease. J. Gen. Virol., 78, 2347-2353.

Lee, Y.S., Lin, B.Y., Hsu, Y.H., Chang, B.Y. and Lin, N.S. (1998). Subgenomic RNAs of bamboo mosaic potexvirus-V isolate are packaged into virions. J. Gen. Virol., 79, 1825-1832.

Park, M.H. and Ryu, K.H. (2003). Molecular evidence supporting the classification of Hosta virus X as a distinct species of the genus Potexvirus. Arch. Virol., 148, 2039-2045.

Solovyev, S.G., Novikov, V.K., Merits, A., Savenkov, E.I., Zeleninu, D.A., Tyulkina, L.G. and Morozov, S.Y. (1994). Genome characterization and taxonomy of Plantago asiatica mosaic potexvirus. J. Gen. Virol., 75, 259-267.

Tomashevskaya, O.L., Solovyev, A.G., Karpova, O.V., Fedorkin, O.N., Rodionova, NP, Morozov, S.Y. and Atabekov, J.G. (1993). Effects of sequence elements in the potato virus X RNA non- translated -leader on its translation enhancing activity. J. Gen. Virol., 74, 2717-2724.

References Mandarivirus

Byadgi, A.S., Ahlawat, Y.S., Chakraborty, N.K., Varma, A., Srivastava, M. and Milne, R.G. (1993). Characterization of a filamentous virus associated with citrus ringspot in India. In: Proc. 12" Conf. International Organization of Citrus Virologists, (P. Moreno et al., eds), pp. 155-162. Riverside, California.

Rustici, G., Accotto, G.P., Noris, E., Masenga, V., Luisoni, E. and Milne, R.G. (2000). Indian citrus ringspot virus: a proposed new species with some affinities to potex-, carla-, fovea- and allexivirusers. Arch. Virol., 145, 1895-1908.

Rustici, G., Milne, R.G. and Accotto, G.P. (2002). Nucleotide sequence, genome organization and phylogenetic analysis of Indian citrus ringspot virus. Arch. Virol., 147, 2215-2224.

References Allexivirus

Arshava, N.V., Konareva, T.N., Ryabov, E.V. and Zavriev, S.K. (1995). The 42K protein of shallot virus X is expressed in the infected Allium plants. Mol. Biol., (Russia) 29, 192-198.

Barg, E., Lesemann, D.E., Vetten, H.J. and Green, S.K. (1994). Identification, partial characterization and distribution of viruses infecting crops in south and south-east Asian countries. Acta Horti., 358, 251-258.

Chen J., Chen J. and Adams MJ. (2001). Molecular characterization of a complex mixture of viruses in garlic with mosaic symptoms in China. Arch. Virol., 146, 1841-1853.

Kanyuka, K.V., Vishnichenko, V.K., Levay, K.E., Kondrikov, D.Yu, Ryabov, E.V. and Zavriev, S.K. (1992). Nucleotide sequence of shallot virus X RNA reveals a 5'-proximal cistron closely related to those of potexviruses and a unique arrangement of the 3'-proximal cistrons. J. Gen. Virol., 73, 2553-2560.

Ryabov, E.V., Generozov, E.V., Vetten, H.J. and Zavriev, S.K. (1996). Analysis of the 3'-region of the mite born filamentous virus genome testifies its relation to the shallot virus X group. Mol. Biol., (Russia), 30, 103-110.

Song, S.I., Song, J.T., Kim, C.H., Lee, J.S. and Choi, Y.D. (1998). Molecular characterization of the garlic virus X genome. J. Gen. Virol., 79, 155-159.

Sumi, S., Tsuneyoshi, T. and Furuntani, H. (1993). Novel rod-shaped viruses isolated from garlic, possessing a unique genome organization. J. Gen. Virol., 74, 1879-1885.

Vishnichenko, V.K., Konareva, T.N. and Zavriev, S.K. (1993). A new filamentous virus in shallot. Pl. Path., 42, 121-126.

Vishnichenko, V.K., Stelmashchuk, V.Y. and Zavriev S.K. (2002). The 42K protein of the Shallot virus X participates in Formation of virus particles. Mol. Biol., (Russia) 36, 1080-1084.

Yamashita, K., Sakai, J. and Hanada, K. (1996). Characterization of a new virus from garlic (Allium sativum L.), garlic mite-borne virus. Ann. Phytopath. Soc. Japan., 62, 483-489.

References Carlavirus

Belintani, P., Gaspar, J.O., Targon, M. and Machado, M.A. (2002). Evidence supporting the recognition of Cole latent virus as a distinct carlavirus. J. Phytopath., 150, 330-333.

Brattey, C., Badge, J.L., Burns, R., Foster, G.D., George, E., Goodfellow, H.A., Mulholland, V., McDonald, J.G. and Jeffries, C.J. (2002). Potato latent virus: a new species in the genus Carlavirus. Plant Pathol., 51, 495-505.

Chen, J., Chen, J.P., Langeveld, S.A., Derks, A.F.L.M. and Adams, M.J. (2003). Molecular characterisation of carla- and potyviruses from Narcissus in China. J. Phytopath., 151, 26-29.

Chen, J., Chen, J. and Adams, M.J. (2001). Molecular characterisation of a complex mixture of viruses in garlic with mosaic symptoms in China. Arch. Virol., 146, 1841-1853.

Cohen, J., Zeidan, M., Feigelson, L., Maslenin, L., Rosner, A. and Gera, A. (2003). Characterization of a distinct carlavirus isolated from Verbena. Arch. Virol., 148, 1007-1015

Foster, G.D. (1992). The structure and expression of the genome of carlaviruses. Res. Virol., 143, 103-112.

Foster, G.D. (1998). Carlavirus isolation and RNA extraction. Plant Virology Protocols: From virus isolation to transgenic resistance. Methods Mol. Biol., 81, 145-151.

Fuji, S., Yamamoto, H., Inoue, M., Yamashita, K., Fukui, Y., Furuya, H. and Naito, H. (2002). Complete nucleotide sequence of the genomic RNA of Aconitum latent virus (genus Carlavirus) isolated from Delphinium sp. Arch. Virol., 147, 865-870.

Hataya, T., Uchino, K., Arimoto, R., Suda, N., Sano, T., Shikata, E. and Uyeda, I. (2000). Molecular characterization of Hop latent virus and phylogenetic relationships among viruses closely related to carlaviruses. Arch. Virol., 145, 2503-2524.

Hataya, T., Arimoto, R., Suda, N. and Uyeda, 1. (2001). Molecular characterization of Hop mosaic virus: its serological and molecular relationships to Hop latent virus. Arch. Virol., 146, 1935-1948.

Lawrence, D.M., Rozanov, M.N. and Hillman, B.I. (1995). Autocatalytic processing of the 223-kDa protein of blueberry scorch carlavirus by a papain-like proteinase. Virology, 207, 127-135.

Monger, W., Seal, S., Issacs, A. and Foster, G.D. (2001). The molecular characterisation of the cassava brown streak virus coat protein. Plant Pathol., 50, 527-534.

Nicolaisen, M., Lykke, and Nielsen, S. (2001). Analysis of the triple gene block and coat protein sequences of two strains of Kalanchoe latent carlavirus. Virus Genes, 22, 265-270.

Song, S.I., Choi, J.N., Song, J.T., Ahn, J.H., Lee, J.S., Kim, M., Cheong, J.J. and Choi, Y.D. (2002). Complete genome sequence of garlic latent virus, a member of the carlavirus family. Mol. Cells, 14, 205-213.

Tsuneyoshi, T., Matsumi, T., Deng, T., Sako, 1. and Sumi, S. (1998). Differentiation of Allium carlaviruses isolated from different parts of the world based on the viral coat protein sequence. Arch. Virol., 143, 10931107.

References Foveavirus

Giunchedi, L, and Poggi Pollini, C. (1992). Cytopathological, negative staining and serological electron microscopy of a clostero-like virus associated with pear vein yellows disease. J. Phytopathol., 134, 329-335.

Jelkmann, W. (1994). Nucleotide sequence of apple stem pitting virus and of the coat protein gene of a similar virus from pear associated with vein yellows disease and their relationship with potex- and carlaviruses. J. Gen. Virol., 75, 1535-1542.

Jelkmann, W. and Keim-Konrad, R. (1997). An immunocapture-polymerase chain reaction and plate trapped ELISA for the detection of apple stem pitting virus. J. Phytopathol., 145, 499-504.

Jelkmann, W., Kunze, L., Vetten, H.J. and Lesemann, D.E. (1992). cDNA cloning of dsRNA associated with apple stem pitting disease and evidence of the relationship of the virus-like agents associated with apple stem pitting and pear vein yellows. Acta Hort., 309, 55-62.

Martelli, G.P. and Jelkmann, W. (1998). Foveavirus, a new plant genus. Arch. Virol., 143, 1245-1249.

Meng, B., Pang, S., Forsline, P.L., McPherson, J.R. and Gonzalves, D. (1998). Nucleotide sequence and genome structure of grapevine rupestris stem pitting associated virus 1 reveal similarities to apple stem pitting virus. J. Gen. Virol., 79, 2059-2069.

Nemchinov, L. Shamloul, A.M., Zemtchik, E.Z., Verdervskaya, T.D. and Hadidi, A. (2000). Apricot latent virus: a new species in the genus Foveavirus. Arch. Virol., 145, 1801-1813.

Rott, M.E. and Jelkmann, W. (2001). Complete nucleotide sequence of cherry necrotic rusty mottle virus. Arch. Virol., 146, 395-401.

Zagula, K., Aref, N.M. and Ramsdell, D.C. (1989). Purification serology, and some properties of a mechanically transmissible virus associated with green ring mottle disease in peach and cherry. Phytopathology, 79, 451456.

Zhang, Y.P., Kirkpatrick, B.C., Smart, C.D. and Uyemoto, J.K., (1998). cDNA cloning and molecular characterization of sour cherry green ring mottle virus. J. Gen. Virol., 79, 2275-2281.

Zhang, Y.P., Uyemoto, J.K., Golino, D.A. and Rowhani, A. (1998). Nucleotide sequence and RT-PCR detection of a virus associated with grapevine rupestris stem-pitting disease. Phytopathology, 88, 1231-1237.

References Capillovirus

Magome, H., Yoshikawa, N., Takahashi T., Ito T. and Miyakawa, T. (1997). Molecular variability of the genome of capilloviruses from apple, Japanese pear, European pear, and citrus trees. Phytopathology, 87, 389-396.

Magome, H., Terauchi, H., Yoshikawa, N. and Takahashi, T. (1997). Analysis of double-stranded RNA in tissues infected with apple stem grooving capillovirus. Ann. Phytopath. Soc. Japan, 63, 450-454.

Ohira, K., Namba. S., Rozanov, M., Kusumi, T. and Tsuchizaki, T. (1995). Complete sequence of and infectious full-length cDNA clone of citrus tatter leaf capillovirus: comparative sequence analysis of capillovirus genomes. J. Gen. Virol., 76, 2305-2309.

Ohki, S., Yoshikawa, N., Inouye, N. and Inouye, T. (1989). Comparative electron microscopy of Chenopodium quinoa leaves infected with apple chlorotic leaf spot, apple stem grooving, or citrus tatter leaf virus. Ann. Phytopath. Soc. Japan, 55, 245-249.

Terauchi, H., Magome, H., Yoshikawa, N., Takahashi, T. and Inouye, N. (1997). Construction of an infectious cDNA clone of the apple stem pitting capillovirus (isolate Li-23) genome containing a cauliflower mosaic virus 35S RNA promoter. Ann. Phytopath. Soc. Japan, 63, 432-436.

Yoshikawa. N. and Takahashi, T. (1988). Properties of RNAs and proteins of apple stem grooving and apple chlorotic leaf spot viruses. J. Gen. Virol., 69, 241-245.

Yoshikawa, N. and Takahashi, T. (1992). Evidence for genomic translation of apple stem grooving capillovirus RNA. J. Gen. Virol., 73, 1313-1315.

References Vitivirus

Abou-Ghanem, N., Saldarelli, P., Minafra, A., Castellano, M.A. and Martelli, G.P. (1997). Properties of grapevine virus D, a novel putative trichovirus. J. Plant Pathol., 79, 1-11.

Bonavia, M., Digiaro, M., Boscia, D., Boari, A., Bottalico, G., Savino, V. and Martelli, G.P. (1996). Studies on "corky rugose wood" of grapevine and on the diagnosis of grapevine virus B. Vitis, 35, 53-58.

Boscia, D., Digiaro, M., Safi, M., Garau, R., Zhou, Z., Minafra, A., Abou Ghanem-Sabanadzovic, N., Bottalico, G. and Potere, O. (2001). Production of monoclonal antibodies to Grapevine virus D and contribution to the study of its aetiologial role in grapevine diseases. Vitis, 40, 69-74.

Choueiri, E., Abou-Ghanem, N. and Boscia, D. (1997). Grapevine virus A and grapevine virus D are serologically distantly related. Vitis, 36, 39-41.

Dell'Orco, M., Saldarelli, P., Minafra, A., Boscia, D. and Gallitelli D. (2002). Epitope mapping of Grapevine virus A capsid protein. Arch. Virol., 147, 627-634.

Galiakparov, N., Tanne, E., Sela, 1. and Gafny, R. (1999). Infectious RNA transcripts from a grapevine virus A cDNA clone. Virus Genes, 19, 235-242.

Galiakparov, N., Tanne, E., Sela, 1. and Gafny, R. (2003). Functional analysis of the grapevine virus A genome. Virology, 306, 42-50.

Galiakparov, N., Goszczynski, D., Che X., Batuman O., Bar-Joseph, M. and Mawassi, M. (2003). Two classes of subgenomic RNA of grapevine virus A produced by internal controller elements. Virology, 312, 434-448.

Garau, R., Prota, V.A., Boscia, D., Fiori, M. and Prota, U. (1995). Pseudococcus affinis Mask., new vector of grapevine trichovirus A and B. Vitis, 34, 67-68.

Goszczynski, D., G.G.F. and Pietersen, G. (1996). Western blot reveals that grapevine viruses A and B are serologically related. J. Phytopatho1., 144, 581-583.

La Notte, P., Buzkan, N., Choueiri, E., Minafra, A, and Martelli, G.P. (1997). Acquisition and transmission of grapevine virus A by the mealybug Pseudococcus longispinus. J. Plant Pathol., 79, 79-85.

Martelli, G.P., Minafra, A. and Saldarelli, P. (1997). Vitivirus, a new genus of plant viruses. Arch. Virol., 142, 1929-1932.

Rubinson, E., Galiakparov, N., Rasian, S., Sela, I., Tanne, E. and Gafny, R. (1997). Serological detection of grapevine virus A using an antiserum to a non structiural protein, the putative movement protein. Phytopathology, 87, 1041-1045.

Saldarelli, P. and Minafra, A. (2000). Immunodetection of the 20kDa protein encoded by ORF 2 of Grapevine virus B. J. Plant Pathol., 82, 157-158.

Saldarelli P., Dell'Orco, M. and Minafra, A. (2000). Infectious cDNA clones of two grapevine viruses. Arch. Virol., 145, 397-405.

Saldarelli P., Minafra, A., Castellano, M.A. and Martelli, G.P. (2000). Immunodetection and subcellular localization of proteins encoded by ORF 3 of grapevine viruses A and B. Arch. Virol., 145, 1535-1542.

References Trichovirus

German, S., Candresse, T., Le Gall, O., Lanneau, M. and Dunez, J. (1992). Analysis of dsRNAs of apple chlorotic leaf spot virus. J. Gen. Virol., 73, 767-773.

German-Retana, S., Bergey, B., Delbos, R.P., Candresse, T. and Dunez, J. (1997). Complete nucleotide sequence of the genome of a severe cherry isolate of apple chlorotic leafspot trichovirus (ACLSV). Arch. Virol., 142, 833-841.

James D. and Upton, C. (1999). Single primer pair designs that facilitate simultaneous detection and differentiation of peach mosaic virus and cherry mottle leaf virus. J. Virol. Meth., 83, 103-111.

James, D. (1998). Isolation and partial characterization of a filamentous virus associated with peach mosaic disease. Plant Dis., 82, 909-913.

James, D. and Mukerji, S. (1993). Mechanical transmission, identification and characterization of a virus associated with mottle leaf in cherry. Plant Dis., 77, 271-275

James, D., Jelkmann, W. and Upton, C. (2000). Nucleotide sequence and genome organisation of cherry mottle leaf virus and its relationship to members of the Trichovirus genus. Arch. Virol., 145, 995-1007.

Kunugi, Y., Asari, S., Terai, Y. and Shinkau, A. (2000). Studies on the grapevine berry inner necrosis virus disease. 2. Transmission of Grapevine berry inner mecrosis virus by the grape erineum mite Colomerus vitis in Yamanashi. Bull. Yamanashi Fruit Tree Exp. Sta., 10, 57-64.

Ohki, S.T., Yoshikawa, N., Inouye, N. and Inouye, T. (1989). Comparative electron microscopy of Chenopodium quinoa leaves infected with apple chlorotic leaf spot, apple stem grooving or citrus tatter leaf virus. Ann. Phytopath. Soc. Japan, 55, 245-249.

Satoh, H., Yoshikawa N and Takahashi T. (1999). Construction and biolistic inoculation of an infectious cDNA clone of apple chlorotic leafspot trichovirus. Ann. Phythopathol. Soc. Japan, 65, 301-304.

Yoshikawa, N., Iida, H., Goto, S., Magome, H., Takahashi, T. and Terai, Y. (1997). Grapevine berry inner necrosis, a new trichovirus: comparative studies with several trichoviruses. Arch. Virol., 142, 1351-1363.

References Flexiviridae

Gambley, C.F. and Thomas, J.E. (2001). Molecular characterisation of Banana mild mottle virus, a new filamentous virus in Musa spp. Arch. Virol., 146, 1369-1379.

Hataya, T., Uchino, K., Arimoto, R., Suda, N., Sano, T., Shikata, E. and Uyeda, I. (2000). Molecular characterization of Hop latent virus and phylogenetic relationships among viruses closely related to carlaviruses. Arch. Virol., 145, 2503-2524.

Melcher, U. (2000). The '30K' superfamily of viral movement proteins. J. Gen. Virol., 81, 257-266.

Morozov, S.Y. and Solovyev, A.G. (2003). Triple gene block: modular design of a multifunctional machine for plant virus movement. J. Gen. Virol., 84, 1351-1366.

Thompson, N. and Randles, J.W. (2001). The genome organization and taxonomy of Sugarcane striate mosaic associated virus. Arch. Virol., 146,1441-1451.

Vives, M.C., Galipienso, L., Navarro, L., Moreno, P. and Guerri, J. (2001). The nucleotide sequence and genomic organization of Citrus leaf blotch virus: Candidate type species for a new virus genus. Virology, 287, 225233.

Vives, M.C., Galipienso, L., Navarro, L., Moreno, P. and Guerri, J. (2002). Characterization of two kinds of subgenomic RNAs produced by citrus leaf blotch virus. Virology, 295, 328-336.

Wong, S.-M., Lee, K.-C, Yu, H.-H. and Leong, W.-F. (1998). Phylogenetic analysis of triple gene block viruses based on the TGB 1 homolog gene indicate a convergent evolution. Virus Genes, 16, 295-302.

Contributed by

Adams, M.J., Accotto, G.P., Agranovsky, A.A., Bar-Joseph, M., Boscia, D., Brunt A.A., Candresse, T., Coutts, R.H.A., Dolja, V.V., Falk, B.W., Foster, G.D., Gonsalves, D., Jelkmann, W., Karasev, A., Martelli G.P., Mawassi, M., Milne, R.G., Minafra, A., Namba, S., Rowhani A., Vetten, H.J., Vishnichenko, V.K., Wisler, G.C., Yoshikawa, N. and Zavriev, S.K.

Additional References

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