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Nature of Genome:
General Host Type:
Morphology:

positive-stranded ssRNA
Plants
not enveloped, filamentous

Family

00.056.  Flexiviridae


 

Taxonomic Structure of the Family
 

Family         00.056. Flexiviridae
Genus                      00.056.0.01. Potexvirus
Genus                      00.056.0.02. Mandarivirus
Genus                      00.056.0.03. Allexivirus
Genus                      00.056.0.04. Carlavirus
Genus                      00.056.0.05. Foveavirus
Genus                      00.056.0.06. Capillovirus
Genus                      00.056.0.07. Vitivirus
Genus                      00.056.0.08. Trichovirus
                                00.056.0.08. unassigned


Genus

00.056.0.01.   Potexvirus

Type Species

00.056.0.01.001.     Potato virus X

List of Species Demarcation Criteria in the Genus

The list of species demarcation criteria in the genus is:
  • Host range: the natural host range is usually specific to different species.
  • Distinct species fail to cross-protect in infected plants.
  • Serology; species and strains of some species are also readily distinguishable in differential reactions with monoclonal antibodies.
  • Sequence: Distinct species have less than ~ 72% identical nt or 80% identical as between their CP or polymerase genes.

    • List of Species in the Genus

    The ICTVdB virus code and the viruses. Official virus species names are in italics. Tentative virus species names, alternative names ( ), isolates, strains, serotypes, subspecies, or rejected names are not italicized.
     
    Virus codes, virus names, genome sequence accession numbers [ ] and assigned abbreviations ( ), are:

    Species, their serotypes, strains and isolates

    00.056.0.01.030.

    Alternanthera mosaic virus

    00.056.0.01.030.00.001.

        Alternanthera mosaic virus

    [AF080448]

    (A1tMV)

    00.056.0.01.002.

    Asparagus virus 3

    00.056.0.01.002.00.001.

        Asparagus virus 3

    (AV-3)

    00.056.0.01.022.

    Bamboo mosaic virus

    00.056.0.01.022.00.001.

        Bamboo mosaic virus

    [D26017]

    (BaMV)

    00.056.0.01.022.00.001.

        Bamboo mosaic virus

    [L77962]

    (BaMV)

    00.056.0.01.022.00.001.

        Bamboo mosaic virus

    [AF018156]

    (BaMV)

    00.056.0.01.003.

    Cactus virus X

    00.056.0.01.003.00.001.

        Cactus virus X

    (CVX)

    00.056.0.01.023.

    Cassava common mosaic virus

    00.056.0.01.023.00.001.

        Cassava common mosaic virus

    [U23414]

    (CsCMV)

    00.056.0.01.004.

    Cassava virus X

    00.056.0.01.004.00.001.

        Cassava virus X

    (CsVX)

    00.056.0.01.005.

    Clover yellow mosaic virus

    00.056.0.01.005.00.001.

        Clover yellow mosaic virus

    [M63511]

    (CIYMV)

    00.056.0.01.005.00.001.

        Clover yellow mosaic virus

    [M63512]

    (CIYMV)

    00.056.0.01.005.00.001.

        Clover yellow mosaic virus

    [M63513]

    (CIYMV)

    00.056.0.01.005.00.001.

        Clover yellow mosaic virus

    [M63514]

    (CIYMV)

    00.056.0.01.005.00.001.

        Clover yellow mosaic virus

    [D00485]

    (CIYMV)

    00.056.0.01.005.00.001.

        Clover yellow mosaic virus

    [D29630]

    (CIYMV)

    00.056.0.01.006.

    Commelina virus X

    00.056.0.01.006.00.001.

        Commelina virus X

    (ComVX)

    00.056.0.01.007.

    Cymbidium mosaic virus

    00.056.0.01.007.00.001.

        Cymbidium mosaic virus

    [U62963]

    (CYMMV)

    00.056.0.01.007.00.001.

        Cymbidium mosaic virus

    [X62663]

    (CYMMV)

    00.056.0.01.007.00.001.

        Cymbidium mosaic virus

    [X62664]

    (CYMMV)

    00.056.0.01.007.00.001.

        Cymbidium mosaic virus

    [X62665]

    (CYMMV)

    00.056.0.01.007.00.001.

        Cymbidium mosaic virus

    [X62133]

    (CYMMV)

    00.056.0.01.007.00.001.

        Cymbidium mosaic virus

    [X81051]

    (CYMMV)

    00.056.0.01.007.00.001.

        Cymbidium mosaic virus

    [AF016914]

    (CYMMV)

    00.056.0.01.024.

    Daphne virus X

    00.056.0.01.024.00.001.

        Daphne virus X

    (DVX)

    00.056.0.01.008.

    Foxtail mosaic virus

    00.056.0.01.008.00.001.

        Foxtail mosaic virus

    [AY121833]

    (FoMV)

    00.056.0.01.008.00.001.

        Foxtail mosaic virus

    [M62730]

    (FoMV)

    00.056.0.01.025.

    Hosta virus X

    00.056.0.01.025.00.117.002.

        Hosta virus X, Korean isolate

    [AY181252]

    (HVX)

    00.056.0.01.009.

    Hydrangea ringspot virus

    00.056.0.01.009.00.001.

        Hydrangea ringspot virus

    [AJ270987]

    (HdRSV)

    00.056.0.01.009.00.001.

        Hydrangea ringspot virus

    [AJ550524]

    (HdRSV)

    00.056.0.01.010.

    Lily virus X

    00.056.0.01.010.00.001.

        Lily virus X

    [X15342]]

    (LVX)

    00.056.0.01.011.

    Narcissus mosaic virus

    00.056.0.01.011.00.001.

        Narcissus mosaic virus

    [D13747]

    (NMV)

    00.056.0.01.012.

    Nerine virus X

    00.056.0.01.012.00.001.

        Nerine virus X

    (NVX)

    00.056.0.01.013.

    Papaya mosaic virus

    00.056.0.01.013.00.001.

        Papaya mosaic virus

    [D13957]

    (PapMV)

    00.056.0.01.013.00.001.

        Papaya mosaic virus

    [AY017186]

    (PapMV)

    00.056.0.01.013.00.001.

        Papaya mosaic virus

    [AY017187]

    (PapMV)

    00.056.0.01.013.00.001.

        Papaya mosaic virus

    [AY017188]

    (PapMV)

    00.056.0.01.013.00.001.

        Papaya mosaic virus

    [D00240]

    (PapMV)

    00.056.0.01.014.00.001.

        Pepino mosaic virus

    [AF484251]

    (PepMV)

    00.056.0.01.014.00.001.

        Pepino mosaic virus

    [AJ438767]

    (PepMV)

    00.056.0.01.014.00.001.

        Pepino mosaic virus

    [AF340024]

    (PepMV)

    00.056.0.01.026.

    Plantago asiatica mosaic virus

    00.056.0.01.026.00.001.

        Plantago asiatica mosaic virus

    [Z21647]

    (PIAMV)

    00.056.0.01.015.

    Plantago severe mottle virus

    00.056.0.01.015.00.001.

        Plantago severe mottle virus

    (PISMOV)

    00.056.0.01.016.

    Plantain virus X

    00.056.0.01.016.00.001.

        Plantain virus X

    (PIVX)

    00.056.0.01.017.

    Potato aucuba mosaic virus

    00.056.0.01.017.00.001.

        Potato aucuba mosaic virus

    [S73580]

    (PAMV)

    00.056.0.01.018.

    Potato virus X

    00.056.0.01.018.00.001.

        Potato virus X

    [M38655]

    (PVX)

    00.056.0.01.018.00.001.

        Potato virus X

    [M95516]

    (PVX)

    00.056.0.01.018.00.001.

        Potato virus X

    [U19790]

    (PVX)

    00.056.0.01.018.00.001.

        Potato virus X

    [X55802]

    (PVX)

    00.056.0.01.018.00.001.

        Potato virus X

    [X72214]

    (PVX)

    00.056.0.01.018.00.001.

        Potato virus X

    [X88782]

    (PVX)

    00.056.0.01.018.00.001.

        Potato virus X

    [X88784]

    (PVX)

    00.056.0.01.018.00.001.

        Potato virus X

    [X88785]

    (PVX)

    00.056.0.01.018.00.001.

        Potato virus X

    [X88786]

    (PVX)

    00.056.0.01.018.00.001.

        Potato virus X

    [X88787]

    (PVX)

    00.056.0.01.018.00.001.

        Potato virus X

    [X88788]

    (PVX)

    00.056.0.01.018.00.001.

        Potato virus X

    [Z29333]

    (PVX)

    00.056.0.01.029.

    Scallion virus X

    00.056.0.01.029.00.001.

        Scallion virus X

    [AJ316085]

    (ScaVX)

    00.056.0.01.027.

    Strawberry mild yellow edge virus

    00.056.0.01.027.00.001.

        Strawberry mild yellow edge virus

    [D12517]

    (SMYEV)

    00.056.0.01.027.00.001.

        Strawberry mild yellow edge virus

    [D12515]

    (SMYEV)

    00.056.0.01.027.00.001.

        Strawberry mild yellow edge virus

    [D01227]

    (SMYEV)

    00.056.0.01.027.00.001.

        Strawberry mild yellow edge virus

    [D00866]

    (SMYEV)

    00.056.0.01.028.

    Tamus red mosaic virus

    00.056.0.01.028.00.001.

        Tamus red mosaic virus

    (TRMV)

    00.056.0.01.019.

    Tulip virus X

    00.056.0.01.019.00.001.

        Tulip virus X

    [AB066288]

    (TVX)

    00.056.0.01.021.

    White clover mosaic virus

    00.056.0.01.021.00.001.

        White clover mosaic virus

    [X06728]

    (WCIMV)

    00.056.0.01.021.00.001.

        White clover mosaic virus

    [X16636]

    (WCIMV)


















































































































    Tentative Species in the Genus

    00.056.0.81.001.

    Artichoke curly dwarf virus

    00.056.0.81.001.00.001.

        Artichoke curly dwarf virus

    (ACDV)

    00.056.0.81.003.

    Barley virus B1

    00.056.0.81.003.00.001.

        Barley virus BI

    (BarV-Bl)

    00.056.0.81.004.

    Boletus virus X

    00.056.0.81.004.00.001.

        Boletus virus X

    (BolVX)

    00.056.0.81.006.

    Centrosema mosaic virus

    00.056.0.81.006.00.001.

        Centrosema mosaic virus

    (CenMV)

    00.056.0.81.008.

    Dioscorea latent virus

    00.056.0.81.008.00.001.

        Dioscorea latent virus

    (DLV)

    00.056.0.81.009.

    Lychnis symptomless virus

    00.056.0.81.009.00.001.

        Lychnis symptomless virus

    (LycSLV)

    00.056.0.81.010.

    Malva veinal necrosis virus

    00.056.0.81.010.00.001.

        Malva veinal necrosis virus

    (MVNV)

    00.056.0.81.011.

    Nandina mosaic virus

    00.056.0.81.011.00.001.

        Nandina mosaic virus

    (NaMV)

    00.056.0.81.012.

    Negro coffee mosaic virus

    00.056.0.81.012.00.001.

        Negro coffee mosaic virus

    (NeCMV)

    00.056.0.81.013.

    Parsley virus 5

    00.056.0.81.013.00.001.

        Parsley virus 5

    (PaV-5)

    00.056.0.81.014.

    Parsnip virus 3

    00.056.0.81.014.00.001.

        Parsnip virus 3

    (ParV-3)

    00.056.0.81.015.

    Parsnip virus 5

    00.056.0.81.015.00.001.

        Parsnip virus 5

    (ParV-5)

    00.056.0.81.023.

    Patchouli virus X

    00.056.0.81.023.00.001.

        Patchouli virus X

    (PatVX)

    00.056.0.81.016.

    Rhododendron necrotic ringspot virus

    00.056.0.81.016.00.001.

        Rhododendron necrotic ringspot virus

    (RoNRSV)

    00.056.0.81.017.

    Rhubarb virus 1

    00.056.0.81.017.00.001.

        Rhubarb virus 1

    (RV-1)

    00.056.0.81.018.

    Smithiantha latent virus

    00.056.0.81.018.00.001.

        Smithiantha latent virus

    (SmiLV)

    00.056.0.81.020.

    Viola mottle virus

    00.056.0.81.020.00.001.

        Viola mottle virus

    (VMOV)

    00.056.0.81.021.

    Zygocactus symptomless virus

    00.056.0.81.021.00.001.

        Zygocactus symptomless virus

    (ZSLV)














































    Genus

    00.056.0.02.   Mandarivirus

    Type Species

    00.056.0.02.001.     Indian citrus ringspot virus

    List of Species Demarcation Criteria in the Genus

    Not applicable.

    List of Species in the Genus

    The ICTVdB virus code and the viruses. Official virus species names are in italics. Tentative virus species names, alternative names ( ), isolates, strains, serotypes, subspecies, or rejected names are not italicized.
     
    Virus codes, virus names, genome sequence accession numbers [ ] and assigned abbreviations ( ), are:

    Species, their serotypes, strains and isolates

    00.056.0.02.001.

    Indian citrus ringspot virus

    00.056.0.02.001.00.001.

        Indian citrus ringspot virus

    [AF406744]

    (ICRSV)




    Tentative Species in the Genus

    None reported.

    Genus

    00.056.0.03.   Allexivirus

    Type Species

    00.056.0.03.001.     Shallot virus X

    List of Species Demarcation Criteria in the Genus

    The criteria demarcating species in the genus are:
  • Members of distinct species have less than ~ 72% identical nt or 80% identical as between their CP or polymerase genes,
  • Different reactions with antisera.

    • List of Species in the Genus

    The ICTVdB virus code and the viruses. Official virus species names are in italics. Tentative virus species names, alternative names ( ), isolates, strains, serotypes, subspecies, or rejected names are not italicized.
     
    Virus codes, virus names, genome sequence accession numbers [ ] and assigned abbreviations ( ), are:

    Species, their serotypes, strains and isolates

    00.056.0.03.008.

    Garlic mite-borne filamentous virus

    00.056.0.03.008.00.001.

        Garlic mite-borne filamentous virus

    (GarMbFV)

    00.056.0.03.002.

    Garlic virus A

    00.056.0.03.002.00.001.

        Garlic virus A

    [AB010300]

    (GarV-A)

    00.056.0.03.002.00.001.

        Garlic virus A

    [AF478197]

    (GarV-A)

    00.056.0.03.002.00.001.

        Garlic virus A

    [X98991]

    (GarV-A)

    00.056.0.03.003.

    Garlic virus B

    00.056.0.03.003.00.001.

        Garlic virus B

    [AB010301]

    (GarV-B)

    00.056.0.03.003.00.001.

        Garlic virus B

    [AF543829]

    (GarV-B)

    00.056.0.03.004.

    Garlic virus C

    00.056.0.03.004.00.001.

        Garlic virus C

    [AB010302]

    (GarV-C)

    00.056.0.03.004.00.001.001.

        Garlic virus C, clone GM88

    [D49443]

    (GarV-C)

    00.056.0.03.005.

    Garlic virus D

    00.056.0.03.005.00.001.

        Garlic virus D

    [AB010303]

    (GarV-D)

    00.056.0.03.005.00.001.

        Garlic virus D

    [AF519572]

    (GarV-D)

    00.056.0.03.005.00.001.001.

        Garlic virus D, UK isolate

    [L38892]

    (GarV-D)

    00.056.0.03.012.

    Garlic virus E

    00.056.0.03.012.00.001.

        Garlic virus E

    [AJ292230]

    (GarV-E)

    00.056.0.03.006.

    Garlic virus X

    00.056.0.03.006.00.001.002.

        Garlic virus X, China isolate

    [AJ292229]

    (GarV-X)

    00.056.0.03.006.00.001.001.

        Garlic virus X, Korea isolate

    [U89243]

    (GarV-X)

    00.056.0.03.007.

    Shallot virus X

    00.056.0.03.007.00.001.

        Shallot virus X

    [M97264]

    (ShVX)

    00.056.0.03.007.00.001.001.

        Shallot virus X, isolate 1995

    [L76292]

    (ShVX)































    Tentative Species in the Genus

    00.056.0.83.009.

    Garlic mite-borne latent virus

    00.056.0.83.009.00.001.

        Garlic mite-borne latent virus

    (GarMbLV)

    00.056.0.83.010.

    Onion mite-borne latent virus

    00.056.0.83.010.00.001.

        Onion mite-borne latent virus

    (OMbLV)

    00.056.0.83.011.

    Shallot mite-borne latent virus

    00.056.0.83.011.00.001.

        Shallot mite-borne latent virus

    (ShMbLV)










    Genus

    00.056.0.04.   Carlavirus

    Type Species

    00.056.0.04.001.     Carnation latent virus

    List of Species Demarcation Criteria in the Genus

    Each distinct species usually has a specific natural host range. Distinct species do not cross-protect in infected common host plant species. Distinct species are readily differentiated by serological procedures; strains of individual species are often distinguishable in reactions with polyclonal antisera, but more readily so with monoclonal antibodies. Distinct species have less than ~72% identical nt or 80% identical as between their CP or polymerase genes.

    List of Species in the Genus

    The ICTVdB virus code and the viruses. Official virus species names are in italics. Tentative virus species names, alternative names ( ), isolates, strains, serotypes, subspecies, or rejected names are not italicized.
     
    Virus codes, virus names, genome sequence accession numbers [ ] and assigned abbreviations ( ), are:

    Species, their serotypes, strains and isolates

    Aphid-borne species:

    00.056.0.04.002.

    American hop latent virus

    00.056.0.04.002.00.001.

        American hop latent virus

    (AHLV)

    00.056.0.04.003.

    Blueberry scorch virus

    00.056.0.04.003.00.002.

        Blueberry scorch virus, strain NJ-2

    [L25658]

    (BlScV)

    00.056.0.04.004.

    Cactus virus 2

    00.056.0.04.004.00.001.

        Cactus virus 2

    (CV-2)

    00.056.0.04.005.

    Caper latent virus

    00.056.0.04.005.00.001.

        Caper latent virus

    (CapLV)

    00.056.0.04.006.

    Carnation latent virus

    00.056.0.04.006.00.001.003.

        Carnation latent virus, pCarLV10

    [AJ010697]

    (CLV)

    00.056.0.04.006.00.001.001.

        Carnation latent virus, pBU-1

    [X55331]

    (CLV)

    00.056.0.04.006.00.001.002.

        Carnation latent virus

    [X55897]

    (CLV)

    00.056.0.04.006.00.001.

        Carnation latent virus

    [U43905]

    (CLV)

    00.056.0.04.007.

    Chrysanthemum virus B

    00.056.0.04.007.00.002.

        Chrysanthemum virus B

    [AJ564854]

    (CVB)

    00.056.0.04.007.00.001.001.

        Chrysanthemum virus B

    [S60150]

    (CVB)

    00.056.0.04.038.

    Cole latent virus

    00.056.0.04.038.00.001.

        Cole latent virus

    [AY340584]

    (CoLV)

    00.056.0.04.008.

    Dandelion latent virus

    00.056.0.04.008.00.001.

        Dandelion latent virus

    (DaLV)

    00.056.0.04.009.

    Elderberry symptomless virus

    00.056.0.04.009.00.001.

        Elderberry symptomless virus

    (ESLV)

    00.056.0.04.009.00.002.

        Elderberry virus A

    00.056.0.04.010.

    Garlic common latent virus

    00.056.0.04.010.00.001.003.

        Garlic common latent virus, GF-1

    [AB004566]

    (GarCLV)

    00.056.0.04.010.00.001.002.

        Garlic common latent virus, GAMS

    [AB004804]

    (GarCLV)

    00.056.0.04.010.00.001.001.

        Garlic common latent virus, GHAV

    [AB004805]

    (GarCLV)

    00.056.0.04.010.00.001.004.

        Garlic common latent virus, Brazil

    [AF228416]

    (GarCLV)

    00.056.0.04.010.00.001.007.

        Garlic common latent virus

    [AF538951]

    (GarCLV)

    00.056.0.04.010.00.001.005.

        Garlic common latent virus - 1

    [X81138]

    (GarCLV)

    00.056.0.04.010.00.001.006.

        Garlic common latent virus - 2

    [X81139]

    (GarCLV)

    00.056.0.04.011.

    Helenium virus S

    00.056.0.04.011.00.001.001.

        Helenium virus S, pHe119

    [D10454]

    (HVS)

    00.056.0.04.011.00.001.002.

        Helenium virus S

    [S71594]

    (HVS)

    00.056.0.04.012.

    Honeysuckle latent virus

    00.056.0.04.012.00.001.

        Honeysuckle latent virus

    (HnLV)

    00.056.0.04.013.

    Hop latent virus

    00.056.0.04.013.00.001.001.

        Hop latent virus, Shinshu-Wase

    [AB032469]

    (HpLV)

    00.056.0.04.014.

    Hop mosaic virus

    00.056.0.04.014.00.001.001.

        Hop mosaic virus

    [AB051109]

    (HpMV)

    00.056.0.04.015.

    Hydrangea latent virus

    00.056.0.04.015.00.001.

        Hydrangea latent virus

    (HdLV)

    00.056.0.04.016.

    Kalanchoe latent virus

    00.056.0.04.016.00.001.002.

        Kalanchoe latent virus, 1452

    [AJ293570]

    (KLV)

    00.056.0.04.016.00.001.001.

        Kalanchoe latent virus, PV-0290

    [AJ293571]

    (KLV)

    00.056.0.04.016.00.001.

        Kalanchoe latent virus

    [AY238136]

    (KLV)

    00.056.0.04.016.00.001.

        Kalanchoe latent virus

    [AY238137]

    (KLV)

    00.056.0.04.016.00.001.

        Kalanchoe latent virus

    [AY238138]

    (KLV)

    00.056.0.04.016.00.001.

        Kalanchoe latent virus

    [AY238139]

    (KLV)

    00.056.0.04.016.00.001.

        Kalanchoe latent virus

    [AY238140]

    (KLV)

    00.056.0.04.016.00.001.

        Kalanchoe latent virus

    [AY238141]

    (KLV)

    00.056.0.04.016.00.001.

        Kalanchoe latent virus

    [AY238142]

    (KLV)

    00.056.0.04.016.00.001.

        Kalanchoe latent virus

    [AY238143]

    (KLV)

    00.056.0.04.017.

    Lilac mottle virus

    00.056.0.04.017.00.001.

        Lilac mottle virus

    (LiMoV)

    00.056.0.04.018.

    Lily symptomless virus

    00.056.0.04.018.00.001.001.

        Alstroemeria carlavirus

    00.056.0.04.018.00.001.

        Lily symptomless virus

    [AJ564638]

    (LSV)

    00.056.0.04.018.00.001.

        Lily symptomless virus

    [AJ516059]

    (LSV)

    00.056.0.04.018.00.001.

        Lily symptomless virus

    [AJ131812]

    (LSV)

    00.056.0.04.018.00.003.003.

        Lily symptomless virus, Kor

    [AF103784]

    (LSV)

    00.056.0.04.018.00.003.002.

        Lily symptomless virus, pLSVKO

    [AF015286]

    (LSV)

    00.056.0.04.018.00.002.001.

        Lily symptomless virus, S34

    [X15343]

    (LSV)

    00.056.0.04.018.00.002.002.

        Lily symptomless virus, Japan

    [D43801]

    (LSV)

    00.056.0.04.018.00.003.001.

        Lily symptomless virus, Korea

    [U43905]

    (LSV)

    00.056.0.04.019.

    Mulberry latent virus

    00.056.0.04.019.00.001.

        Mulberry latent virus

    (MLV)

    00.056.0.04.020.

    Muskmelon vein necrosis virus

    00.056.0.04.020.00.001.

        Muskmelon vein necrosis virus

    (MuVNV)

    00.056.0.04.021.

    Nerine latent virus

    00.056.0.04.021.00.002.

        Hippeastrum latent virus

    00.056.0.04.021.00.001.

        Nerine latent virus

    (NeLV)

    00.056.0.04.022.

    Passiflora latent virus

    00.056.0.04.022.00.001.

        Passiflora latent virus

    [AF354652]

    (PLV)

    00.056.0.04.023.

    Pea streak virus

    00.056.0.04.023.00.001.001.

        Alfalfa latent virus, Nebraska

    [AY037925]

    00.056.0.04.023.00.002.001.

        Pea streak virus, Wisconsin

    [AF354652]

    (PeSV)

    00.056.0.04.034.

    Potato latent virus

    00.056.0.04.034.00.001.

        Potato latent virus

    [AY007728]

    (PotLV)

    00.056.0.04.025.

    Potato virus M

    00.056.0.04.025.00.001.

        Potato virus M

    [X53062]

    (PVM)

    00.056.0.04.025.00.001.004.

        Potato virus M, German

    [X57440]

    (PVM)

    00.056.0.04.025.00.001.001.

        Potato virus M, Russian wild

    [D14449]

    (PVM)

    00.056.0.04.025.00.001.

        Potato virus M

    [AF23877]

    (PVM)

    00.056.0.04.026.

    Potato virus S

    00.056.0.04.026.00.002.

        Pepino latent virus

    00.056.0.04.026.00.001.

        Potato virus S

    [D00461]

    (PVS)

    00.056.0.04.026.00.001.

        Potato virus S

    [S45593]

    (PVS)

    00.056.0.04.027.

    Red clover vein mosaic virus

    00.056.0.04.027.00.001.

        Red clover vein mosaic virus

    (RCVMV)

    00.056.0.04.028.

    Shallot latent virus

    00.056.0.04.028.00.002.

        Garlic latent virus

    [AB004458]

    (SLV)

    00.056.0.04.028.00.002.

        Garlic latent virus

    [AB004565]

    (SLV)

    00.056.0.04.028.00.002.

        Garlic latent virus

    [AB004566]

    (SLV)

    00.056.0.04.028.00.002.

        Garlic latent virus

    [AB004567]

    (SLV)

    00.056.0.04.028.00.002.

        Garlic latent virus

    [AB004685]

    (SLV)

    00.056.0.04.028.00.002.

        Garlic latent virus

    [AB004684]

    (SLV)

    00.056.0.04.028.00.002.

        Garlic latent virus

    [AB004686]

    (SLV)

    00.056.0.04.028.00.002.

        Garlic latent virus

    [NC_003557]

    (SLV)

    00.056.0.04.028.00.001.

        Shallot latent virus

    [AB004456]

    (GarLV)

    00.056.0.04.028.00.001.

        Shallot latent virus

    [AB004457]

    (GarLV)

    00.056.0.04.028.00.001.

        Shallot latent virus

    [AB004544]

    (GarLV)

    00.056.0.04.028.00.001.

        Shallot latent virus

    [AB004802]

    (GarLV)

    00.056.0.04.028.00.001.

        Shallot latent virus

    [AB004803]

    (GarLV)

    00.056.0.04.029.

    Sint-Jan’s onion latent virus

    00.056.0.04.029.00.001.

        Sint-Jan's onion latent virus

    (SJOLV)

    00.056.0.04.029.

        Sint-Jem's onion latent virus

    00.056.0.04.030.

    Strawberry pseudo mild yellow edge virus

    00.056.0.04.030.00.001.

        Strawberry pseudo mild yellow edge virus

    (SPMYEV)

    Whitefly-transmitted species:

    00.056.0.04.031.

    Cowpea mild mottle virus

    00.056.0.04.031.00.006.

        Bean angular mosaic virus

    00.056.0.04.031.00.001.

        Cowpea mild mottle virus

    [AF024628]

    (CPMMV)

    00.056.0.04.031.00.001.

        Cowpea mild mottle virus

    [AF024629]

    (CPMMV)

    00.056.0.04.031.00.003.

        Groundnut crinkle virus

    00.056.0.04.031.00.002.

        Psophocarpus necrotic mosaic virus

    00.056.0.04.031.00.004.

        Tomato pale chlorosis virus

    00.056.0.04.031.00.005.

        Voandzeia mosaic virus

    Unkown vector species:

    00.056.0.04.033.

    Aconitum latent virus

    00.056.0.04.033.00.001.

        Aconitum latent virus

    [AB051848]

    (AcLV)

    00.056.0.04.039.

    Narcissus common latent virus

    00.056.0.04.039.00.001.

        Narcissus common latent virus

    [AJ311375]

    (NCLV)

    00.056.0.04.039.00.001.

        Narcissus common latent virus

    [AJ311376]

    (NCLV)

    00.056.0.04.024.

    Poplar mosaic virus

    00.056.0.04.024.00.001.

        Poplar mosaic virus

    [X65102]

    (POPMV)

    00.056.0.04.024.00.001.

        Poplar mosaic virus

    [D13364]

    (POPMV)

    00.056.0.04.024.00.001.

        Poplar mosaic virus

    [X97683]

    (POPMV)

    00.056.0.04.024.00.001.

        Poplar mosaic virus

    [X97765]

    (POPMV)

    00.056.0.04.040.

    Verbena latent virus

    00.056.0.04.040.00.001.

        Verbena latent virus

    [AF271218]

    (VeLV)





































































































































































    Tentative Species in the Genus

    00.056.0.84.001.

    Anthriscus latent virus

    00.056.0.84.001.00.001.

        Anthriscus latent virus

    (AntLV)

    00.056.0.84.002.

    Arracacha latent virus

    00.056.0.84.002.00.001.

        Arracacha latent virus

    (ALV)

    00.056.0.84.003.

    Artichoke latent virus M

    00.056.0.84.003.00.001.

        Artichoke latent virus M

    (ArLVM)

    00.056.0.84.004.

    Artichoke latent virus S

    00.056.0.84.004.00.001.

        Artichoke latent virus S

    (ArLVS)

    00.056.0.84.005.

    Butterbur mosaic virus

    00.056.0.84.005.00.001.

        Butterbur mosaic virus

    (ButMV)

    00.056.0.84.006.

    Caraway latent virus

    00.056.0.84.006.00.001.

        Caraway latent virus

    (CawLV)

    00.056.0.84.007.

    Cardamine latent virus

    00.056.0.84.007.00.001.

        Cardamine latent virus

    (CaLV)

    00.056.0.84.008.

    Cassia mild mosaic virus

    00.056.0.84.008.00.001.

        Cassia mild mosaic virus

    (CasMMV)

    00.056.0.84.009.

    Chicory yellow blotch virus

    00.056.0.84.009.00.001.

        Chicory yellow blotch virus

    (ChYBV)

    00.056.0.84.012.

    Cynodon mosaic virus

    00.056.0.84.012.00.001.

        Cynodon mosaic virus

    (CynMV)

    00.056.0.84.013.

    Daphne virus S

    00.056.0.84.013.00.001.

        Daphne virus S

    [AJ535084]

    (DVS)

    00.056.0.84.014.

    Dulcamara virus A

    00.056.0.84.014.00.001.

        Dulcamara virus A

    (DuVA)

    00.056.0.84.015.

    Dulcamara virus B

    00.056.0.84.015.00.001.

        Dulcamara virus B

    (DuVB)

    00.056.0.84.016.

    Eggplant mild mottle virus

    00.056.0.84.016.00.001.

        Eggplant mild mottle virus

    (EMMV)

    00.056.0.84.016.

        Eggplant virus

    00.056.0.84.017.

    Euonymus mosaic virus

    00.056.0.84.017.00.001.

        Euonymus mosaic virus

    (EuoMV)

    00.056.0.84.018.

    Fig virus S

    00.056.0.84.018.00.001.

        Fig virus S

    (FVS)

    00.056.0.84.019.

    Fuchsia latent virus

    00.056.0.84.019.00.001.

        Fuchsia latent virus

    (FLV)

    00.056.0.84.020.

    Garlic mosaic virus

    00.056.0.84.020.00.001.

        Garlic mosaic virus

    (GarMV)

    00.056.0.84.021.

    Gentiana latent virus

    00.056.0.84.021.00.001.

        Gentiana latent virus

    (GenLV)

    00.056.0.84.022.

    Gynura latent virus

    00.056.0.84.022.00.001.

        Gynura latent virus

    (GyLV)

    00.056.0.84.022.

        Chrysanthemum virus B

    00.056.0.84.023.

    Helleborus mosaic virus

    00.056.0.84.023.00.001.

        Helleborus mosaic virus

    (HeMV)

    00.056.0.84.024.

    Impatiens latent virus

    00.056.0.84.024.00.001.

        Impatiens latent virus

    (ILV)

    00.056.0.84.025.

    Lilac ringspot virus

    00.056.0.84.025.00.001.

        Lilac ringspot virus

    (LiRSV)

    00.056.0.84.026.

    Plantain virus 8

    00.056.0.84.026.00.001.

        Plantain virus 8

    (PIV-8)

    00.056.0.84.035.

    Potato rough dwarf virus

    00.056.0.84.035.00.001.

        Potato rough dwarf virus

    [AJ250314]

    (PRDV)

    00.056.0.84.037.

    Potato virus P

    00.056.0.84.037.00.001.

        Potato virus P

    (PVP)

    00.056.0.84.037.

        Potato Virus P

    00.056.0.84.027.

    Prunus virus S

    00.056.0.84.027.00.001.

        Prunus virus S

    (PruVS)

    00.056.0.84.028.

    Southern potato latent virus

    00.056.0.84.028.00.001.

        Southern potato latent virus

    (SoPLV)

    00.056.0.84.029.

    White bryony mosaic virus

    00.056.0.84.029.00.001.

        White bryony mosaic virus

    (WBMV)














































































    Genus

    00.056.0.05.   Foveavirus

    Type Species

    00.056.0.05.001.     Apple stem pitting virus

    List of Species Demarcation Criteria in the Genus

    The criteria demarcating species in the genus are:
  • Natural host range,
  • Mechanical transmissibility,
  • Serological specificity,
  • CP size,
  • Less than ~ 72% identical nt or 80% homologous as between CP or polymerase genes.

    • List of Species in the Genus

    The ICTVdB virus code and the viruses. Official virus species names are in italics. Tentative virus species names, alternative names ( ), isolates, strains, serotypes, subspecies, or rejected names are not italicized.
     
    Virus codes, virus names, genome sequence accession numbers [ ] and assigned abbreviations ( ), are:

    Species, their serotypes, strains and isolates

    00.056.0.05.001.

    Apple stem pitting virus

    00.056.0.05.001.00.001.

        Apple stem pitting virus

    [D21829]

    (ASPV)

    00.056.0.05.001.00.001.

        Apple stem pitting virus

    [AB045731]

    (ASPV)

    00.056.0.05.001.00.002.

        Pear vein yellows virus

    [D21828]

    00.056.0.05.008.

    Apricot latent virus

    00.056.0.05.008.00.001.

        Apricot latent virus

    [AF057035]

    (ApLV)

    00.056.0.05.002.

    Rupestris stem pitting-associated virus

    00.056.0.05.002.00.001.

        Rupestris stem pitting-associated virus

    [AF026278]

    (RSPaV)

    00.056.0.05.002.00.001.

        Rupestris stem pitting-associated virus

    [AF057136]

    (RSPaV)

    00.056.0.05.002.

        Grapevine rupestris stem pitting-associated virus

    [AF026278]














    Tentative Species in the Genus

    None reported.

    Genus

    00.056.0.06.   Capillovirus

    Type Species

    00.056.0.06.001.     Apple stem grooving virus

    List of Species Demarcation Criteria in the Genus

    The criteria demarcating species in the genus are:
  • Natural host range,
  • Serological specificity (all known species are serologically unrelated),
  • Less than - 72% identical nt or 80% identical as between the CP or polymerase genes.

    • List of Species in the Genus

    The ICTVdB virus code and the viruses. Official virus species names are in italics. Tentative virus species names, alternative names ( ), isolates, strains, serotypes, subspecies, or rejected names are not italicized.
     
    Virus codes, virus names, genome sequence accession numbers [ ] and assigned abbreviations ( ), are:

    Species, their serotypes, strains and isolates

    00.056.0.06.001.

    Apple stem grooving virus

    00.056.0.06.001.00.001.

        Apple stem grooving virus

    [D14995]

    (ASGV)

    00.056.0.06.001.00.001.

        Apple stem grooving virus

    [D16368]

    (ASGV)

    00.056.0.06.001.00.001.

        Apple stem grooving virus

    [D14455]

    (ASGV)

    00.056.0.06.001.00.001.

        Apple stem grooving virus

    [AB004063]

    (ASGV)

    00.056.0.06.001.00.002.

        Citrus tatter leaf virus

    [D16681]

    00.056.0.06.005.

    Cherry virus A

    00.056.0.06.005.00.001.

        Cherry virus A

    [X82547]

    (CVA)

    00.056.0.06.003.

    Lilac chlorotic leafspot virus

    00.056.0.06.003.00.001.

        Lilac chlorotic leafspot virus

    (LiCLV)














    Tentative Species in the Genus

    00.056.0.86.004.

    Nandina stem pitting virus

    00.056.0.86.004.00.001.

        Nandina stem pitting virus

    (NSPV)




    Genus

    00.056.0.07.   Vitivirus

    Type Species

    00.056.0.07.001.     Grapevine virus A

    List of Species Demarcation Criteria in the Genus

    The criteria demarcating species in the genus are:
  • The natural host range,
  • Serological specificity using discriminatory polyclonal and monoclonal antibodies,
  • Epidemiology: individual species or groups of species are transmitted by different types and species of vectors,
  • Differences in dsRNA pattern,
  • Less than ~ 72% identical nt or 80% identical as between the CP or polymerase genes.

    • List of Species in the Genus

    The ICTVdB virus code and the viruses. Official virus species names are in italics. Tentative virus species names, alternative names ( ), isolates, strains, serotypes, subspecies, or rejected names are not italicized.
     
    Virus codes, virus names, genome sequence accession numbers [ ] and assigned abbreviations ( ), are:

    Species, their serotypes, strains and isolates

    00.056.0.07.001.

    Grapevine virus A

    00.056.0.07.001.00.001.

        Grapevine virus A

    [X75433]

    (GVA)

    00.056.0.07.001.00.001.

        Grapevine virus A

    [AF007415]

    (GVA)

    00.056.0.07.002.

    Grapevine virus B

    00.056.0.07.002.00.001.

        Grapevine virus B

    [X75448]

    (GVB)

    00.056.0.07.004.

    Grapevine virus D

    00.056.0.07.004.00.001.

        Grapevine virus D

    [Y07764]

    (GVD)

    00.056.0.07.005.

    Heracleum latent virus

    00.056.0.07.005.00.001.

        Heracleum latent virus

    [X79270]

    (HLV)













    Tentative Species in the Genus

    00.056.0.87.003.

    Grapevine virus C

    00.056.0.87.003.00.001.

        Grapevine virus C

    (GVC)




    Genus

    00.056.0.08.   Trichovirus

    Type Species

    00.056.0.08.001.     Apple chlorotic leaf spot virus

    List of Species Demarcation Criteria in the Genus

    The criteria demarcating species in the genus are:
  • Natural and experimental host range,
  • Serological specificity,
  • Less than ~ 72% identical nt or 80% identical as between the CP or polymerase genes,
  • Transmission by a vector,
  • Vector specificity.

    • List of Species in the Genus

    The ICTVdB virus code and the viruses. Official virus species names are in italics. Tentative virus species names, alternative names ( ), isolates, strains, serotypes, subspecies, or rejected names are not italicized.
     
    Virus codes, virus names, genome sequence accession numbers [ ] and assigned abbreviations ( ), are:

    Species, their serotypes, strains and isolates

    00.056.0.08.001.

    Apple chlorotic leaf spot virus

    00.056.0.08.001.00.001.

        Apple chlorotic leaf spot virus

    [M58152]

    (ACLSV)

    00.056.0.08.001.00.001.

        Apple chlorotic leaf spot virus

    [D14996]

    (ACLSV)

    00.056.0.08.001.00.001.

        Apple chlorotic leaf spot virus

    [X99752]

    (ACLSV)

    00.056.0.08.001.00.001.

        Apple chlorotic leaf spot virus

    [AJ243438]

    (ACLSV)

    00.056.0.08.004.

    Cherry mottle leaf virus

    00.056.0.08.004.00.001.

        Cherry mottle leaf virus

    [AF170028]

    (CMLV)

    00.056.0.08.002.

    Grapevine berry inner necrosis virus

    00.056.0.08.002.00.001.

        Grapevine berry inner necrosis virus

    [D88448]

    (GINV)

    00.056.0.08.005.

    Peach mosaic virus

    00.056.0.08.005.00.001.

        Peach mosaic virus

    (PcMV)















    Tentative Species in the Genus

    None reported.

    List of Unassigned Viruses in the Family

    00.056.0.00.006.

    Potato virus T

    00.056.0.00.006.00.001.

        Potato virus T

    [D10172]

    (PVT)

    00.056.0.08.006.

        Potato virus T

    [D10172]

    00.056.0.00.001.

    Banana mild mosaic virus

    00.056.0.00.001.00.001.

        Banana mild mosaic virus

    [AF314662]

    (ORV)

    00.056.0.00.002.

    Cherry green ring mottle virus

    00.056.0.00.002.00.001.

        Cherry green ring mottle virus

    [AF017780]

    (ORV)

    00.056.0.00.002.00.001.

        Cherry green ring mottle virus

    [AJ291761]

    (ORV)

    00.056.0.00.003.

    Cherry necrotic rusty mottle virus

    00.056.0.00.003.00.001.

        Cherry necrotic rusty mottle virus

    [AF237816]

    (ORV)

    00.056.0.00.004.

    Citrus leaf blotch virus

    00.056.0.00.004.00.001.

        Citrus leaf blotch virus

    [AJ318061]

    (ORV)

    00.056.0.00.005.

    Sugarcane striate mosaic-associated virus

    00.056.0.00.005.00.001.

        Sugarcane striate mosaic-associated virus

    [AF315308]

    (ORV)




















    Tentative Species in the Family

    None reported.

    00.056.0.05.006.

    Peach asteroid spot virus

    00.056.0.05.007.

    Peach sooty ringspot virus





    Similarity with other Taxa

    The polymerase proteins are members of the "alphavirus-like" supergroup of RNA viruses and therefore are likely to have some relationship to those of other virus genera, including the tymoviruses. The TGB proteins of members of the family Flexiviridae are related to those of rod-shaped viruses in the genera Benyvirus, Hordeivirus, Pecluvirus and Pomovirus, but form a distinct subgroup.

    Derivation of Names

    Allexi: sigla from Allium (the genus name for the principal host, shallot) + X Capillo: from Latin capillus, a hair. Carla: sigla from Carnation latent virus. Flexi: from flexus, Latin for bent. Fovea: from fovea, Latin for pit, hole, type of symptom induced by the type species. Mandari: from mandarin (Citrus reticulata), the host of the type species, Indian citrus ringspot virus. Potex: sigla from Potato virus X. Tricho: from thrix, Greek for hair. Viti: from Vitis, generic name of the grapevine, Vitis vinifera.

    References

    Collated from VIIIth ICTV Report

    Contributed by

    Adams, M.J., Accotto, G.P., Agranovsky, A.A., Bar-Joseph, M., Boscia, D., Brunt A.A., Candresse, T., Coutts, R.H.A., Dolja, V.V., Falk, B.W., Foster, G.D., Gonsalves, D., Jelkmann, W., Karasev, A., Martelli G.P., Mawassi, M., Milne, R.G., Minafra, A., Namba, S., Rowhani A., Vetten, H.J., Vishnichenko, V.K., Wisler, G.C., Yoshikawa, N. and Zavriev, S.K.

    Cite this publication as: Index of Viruses - Flexiviridae (2006). In: ICTVdB - The Universal Virus Database, version 4. Büchen-Osmond, C (Ed), Columbia University, New York, USA. http://www.ncbi.nlm.nih.gov/ICTVdb/Ictv/fs_index.htm

    Version 4 is based on Virus Taxonomy, Classification and Nomenclature of Viruses, 8th ICTV Report of the International Committee on Taxonomy of Viruses. Fauquet, CM, Mayo, MA, Maniloff, J, Desselberger, U, and Ball, LA (EDS) (2005) Elsevier/Academic Press, pp. 1259.

    Additional References

    Reference List from the 8th ICTV Report
    ICTVdB taxon description
    ICTVdB Picture Gallery

    References to sequence databases at GenBank and PubMed Central:
    PubMed Central References; nucleotide sequences; complete genomes



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