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Descriptions are generated automatically from the ICTVdB database including links. Some descriptions are only very basic and links may point to documents that are not yet published on the Web.

81.002.4.02.001. Cucumber mosaic virus satellite RNA

Cite this publication as: ICTVdB Management (2006). 81.002.4.02.001. Cucumber mosaic virus satellite RNA. In: ICTVdB - The Universal Virus Database, version 3. Büchen-Osmond, C. (Ed), Columbia University, New York, USA

Cite this site as: ICTVdB - The Universal Virus Database, version 3. http://www.ncbi.nlm.nih.gov/ICTVdb/ICTVdB/

Table of Contents

Classification

This is a description of a plant satellite at the species level.

ICTVdB Virus Code: 81.002.4.02.001. Virus accession number: 81242001. Obsolete virus code: 81.064.0.53.001.; 64.0.5.3.001; superceded accession number: 64053001.
NCBI Taxonomy Identifier Taxon ID: 12436.

Name, Synonyms and Lineage

Virus is an ICTV approved species of the genus 81.002.4. single stranded Satellite RNAs; family 81. Satellites.

Virion Properties

Nucleic acid is not encapsidated and virus relies for encapsidation on a helper virus.

Nucleic Acid

The genome is linear, single-stranded RNA, is fully sequenced. Sequence has the accession number

[A10086] Em(40)_vi:A10086 Gb(84)_pat:A10086 satellite I 17N. 2/94 335bp
[D00541] Em(40)_vi:MCVSATRA Gb(84)_vi:MCVSATRA satellite RNA, complete cds. 3/91 338bp.
[D00542] Em(40)_vi:MCVSATY Gb(84)_vi:MCVSATY (CMV) satellite RNA, complete sequence. 5/92 369bp.
[D00699] Em(40)_vi:CUMCVS10 Gb(84)_vi:MCVSATR satellite RNA. 3/91 338bp.

[D10036] Em(40)_vi:MCVS19SAT Gb(84)_vi:MCVS19SAT (CMV) satellite RNA. 5/92 370bp.
[D10037] Em(40)_vi:MCVT73SAT Gb(84)_vi:MCVT73SAT (CMV) satellite RNA. 5/92 335bp.
[D10038] Em(40)_vi:MCVYSAT Gb(84)_vi:MCVYSAT2 (CMV) satellite RNA, complete sequence. 5/92 369bp.
[D10039] Em(40)_vi:MCVT43SAT Gb(84)_vi:MCVT43SAT (CMV) satellite RNA. 9/93 384bp
[D11048] Em(40)_vi:MCVPKO2S8 Gb(84)_vi:MCVPKO2S1 satellite RNA. 3/93 368bp

[D11049] Em(40)_vi:MCVPKO2S7 Gb(84)_vi:MCVPKO2S2 satellite RNA. 3/93 368bp

[D11050] Em(40)_vi:MCVPKO2S2 Gb(84)_vi:MCVPKO2S3 satellite RNA. 3/93 368bp

[D11051] Em(40)_vi:MCVPKO2S3 Gb(84)_vi:MCVPKO2S4 satellite RNA. 3/93 368bp

[D11052] Em(40)_vi:MCVPKO2S4 Gb(84)_vi:MCVPKO2S5 satellite RNA. 3/93 368bp

[D11053] Em(40)_vi:MCVPKO2S5 Gb(84)_vi:MCVPKO2S6 satellite RNA. 3/93 368bp

[D28559] Em(44)_vi:Mcvkn Gb(90)_vi:Mcvkn Cucumber mosaic virus satellite RNA, complete sequence. 4/95 405bp.
[J02060] Em(40)_vi:CUSATRNA Gb(84)_vi:MCVSATRNA satellite rna(sat-rna). 4/90 336bp.
[J02061] Em(40)_vi:CUSATRN5 Gb(84)_vi:MCVSATRN5 -associated satellite RNA 5 ((1)caRNA5). 4/90 334bp.
[M10686] Em(40)_vi:CUMCVSAT Gb(84)_vi:MCVSATRNB -associated RNA 5 (CARNA 5), complete sequence. 7/89 336bp.
[M14934] Em(40)_vi:CUMCVS01 Gb(84)_vi:MCVSATRNC (strain S)-associated satellite (S)CARNA 5 RNA, complete cds. 7/89 339b
[M16585] Em(40)_vi:CUMCVSRG Gb(84)_vi:MCVSRG G-sat RNA. 7/89 332bp.
[M16586] Em(40)_vi:CUMCVSRB Gb(84)_vi:MCVSRB1 B1-sat RNA. 7/89 337bp.
[M16587] Em(40)_vi:CUMCVS02 Gb(84)_vi:MCVSRB2 B2-sat RNA. 7/89 340bp.
[M16588] Em(40)_vi:CUMCVS03 Gb(84)_vi:MCVSRB3 B3-sat RNA. 7/89 337bp
[M16589] Em(40)_vi:CUMCVSRW Gb(84)_vi:MCVSRWL1 WL1-sat RNA. 7/89 336bp
[M16590] Em(40)_vi:CUMCVS08 Gb(84)_vi:MCVSRWL2 WL2-sat RNA. 7/89 342bp
[M18867] Em(40)_vi:CUMCVSRI Gb(84)_vi:MCVSRI17A (CMV) satellite I17N(1) RNA. 12/91 335bp.
[M18868] Em(40)_vi:CUMCVS05 Gb(84)_vi:MCVSRI17B (CMV) satellite I17N(2) RNA. 12/91 335bp.
[M18869] Em(40)_vi:CUMCVSRR Gb(84)_vi:MCVSRRA (CMV) satellite R(1) RNA. 12/91 307bp.
[M18870] Em(40)_vi:CUMCVS06 Gb(84)_vi:MCVSRRB (CMV) satellite R(2) RNA. 12/91 331bp.
[M18871] Em(40)_vi:CUMCVS07 Gb(84)_vi:MCVSRRC (CMV) satellite R(3) RNA. 12/91 333bp.
[M18872] Em(40)_vi:CUMCVSRD Gb(84)_vi:MCVSRD (CMV) satellite D RNA. 12/91 335bp
[M20350] Em(40)_vi:CUMCVC5T Gb(84)_vi:MCVC5TNA CARNA 5 gene with ORFs I, IIA, and IIB, 5' end, clone D. 7/89 335bp.
[M20352] Em(40)_vi:CUMCVC01 Gb(84)_vi:MCVC5TNB CARNA 5 gene with ORFs I, IIA, and IIB, 5' end, clone Sq10. 7/89 335bp.
[M20353] Em(40)_vi:CUMCVC02 Gb(84)_vi:MCVC5TNC CARNA 5 gene with ORFs I, IIA, and IIB, 5' end, clone Ch20. 7/89 335bp.
[M20354] Em(40)_vi:CUMCVC03 Gb(84)_vi:MCVC5TND CARNA 5 gene with ORFs I, IIA, and IIB, 5' end, clone X2nT3. 7/89 334bp.
[M20355] Em(40)_vi:CUMCVC04 Gb(84)_vi:MCVC5TNE CARNA 5 gene with ORFs I, IIA, and IIB, 5' end, clone X7. 7/89 334bp.
[M20356] Em(40)_vi:CUMCVC05 Gb(84)_vi:MCVC5TNF CARNA 5 gene with ORFs I, IIA, and IIB, 5' end, clone X12. 7/89 336bp.
[M20357] Em(40)_vi:CUMCVC06 Gb(84)_vi:MCVC5TNG CARNA 5 gene with ORFs I, IIA, and IIB, 5' end, clone X15. 7/89 336bp.
[M20360] Em(40)_vi:CUMCVC07 Gb(84)_vi:MCVC5TNH CARNA 5 gene with ORFs I, IIA, and IIB, 5' end, clone X2c. 7/89 338bp.
[M20844] Em(40)_vi:CUMCVSRN Gb(84)_vi:MCVSRNAE E-satellite (E-satRNA) RNA. 7/89 339bp.
[M20845] Em(40)_vi:CUMCVS09 Gb(84)_vi:MCVSRNAY OY-satellite (OY2- satRNA) RNA. 7/89 386bp.
[M21742] Em(40)_vi:CUMCVS04 Gb(84)_vi:MCVSRDC5 (D) CARNA 5-sat RNA. 7/89 58bp.
[M21743] Em(40)_vi:CUMCVSR1 Gb(84)_vi:MCVSR1C5 (1)CARNA 5-sat RNA. 7/89 59bp.
[M21744] Em(40)_vi:CUMCVSRS Gb(84)_vi:MCVSRSC5 (S) CARNA 5-sat RNA. 7/89 61bp.
[M21745] Em(40)_vi:CUMCVSRY Gb(84)_vi:MCVSRY Y-sat RNA. 7/89 59bp.
[M30584] Em(40)_vi:MCVDSAT4 Gb(84)_vi:MCVDSAT4A (CMV) D-satellite RNA, clone pDsat4. 4/90 335bp.
[M30585] Em(40)_vi:MCVDSAT5 Gb(84)_vi:MCVDSAT5A (CMV) D-satellite RNA, clone pDsat5. 4/90 334bp.
[M30586] Em(40)_vi:MCVDSAT6 Gb(84)_vi:MCVDSAT6A (CMV) D-satellite RNA, clone pDsat6. 4/90 335bp.
[M30587] Em(40)_vi:MCVDSAT9 Gb(84)_vi:MCVDSAT9A (CMV) D-satellite RNA, clone pDsat9. 4/90 335bp.
[M30588] Em(40)_vi:MCVWLSA4 Gb(84)_vi:MCVWLSA47A (CMV) WL-satellite RNA, clone pWLsat47. 4/90 335bp.
[M30589] Em(40)_vi:MCVWLS21 Gb(84)_vi:MCVWLS210A (CMV) WL- satellite RNA, clone pWLsat210. 4/90 333bp.
[M30590] Em(40)_vi:MCVWLS32 Gb(84)_vi:MCVWLS324A (CMV) WL-satellite RNA, clone pWLsat324. 4/90 315bp
[M30591] Em(40)_vi:MCVB1SAT Gb(84)_vi:MCVB1SAT1A (CMV) B-1-satellite RNA, clones pBsat 1,3,5. 4/90 338bp.
[M30592] Em(40)_vi:MCVBSA2A Gb(84)_vi:MCVBSA2A (CMV) B-1-satellite RNA, clone pBsat2. 4/90 338bp.
[M30593] Em(40)_vi:MCVBSA4A Gb(84)_vi:MCVBSA4A (CMV) B-1-satellite RNA, clone pBsat4. 4/90 338bp.
[M64284] Em(40)_vi:SCBSATRNA Gb(84)_vi:SCBSATRNA Satellite (strain Ix) RNA. 12/91 334bp
[S61869] Em(40)_vi:S61869 Gb(84)_vi:S61869 (satellite RNA) CMV, satellite RNA, Genomic Mutagenesis, 58 nt. 1/94
[X51465] Em(40)_vi:CUCMWSAT Gb(84)_vi:CUCMWSAT WL3-satellite RNA. 9/90 340bp.
[X53534] Em(40)_vi:CUMVSAT Gb(84)_vi:CUMVSAT satellite RNA. 9/90 339bp.
[X54065] Em(40)_vi:CMVFNY1 Gb(84)_vi:CMVFNY1 Fny1-satellite RNA. 5/92 337bp.

[X54066] Em(40)_vi:CMVFNY2 Gb(84)_vi:CMVFNY2 Fny2-satellite RNA. 5/92 337bp.

[X65455] Em(40)_vi:CMVSAT Gb(84)_vi:CMVSAT satellite RNA. 5/94 390bp
[X69136] Em(40)_vi:CMVSATRNA Gb(84)_vi:CMVSATRNA (CMV) satellite RNA. 1/93 339bp
[S68622] Gb(89)_vi:S68622 (satellite RNA D27-CARNA-5) (cucumber mosaic virus CMV, cucumber mosaic virus-associated RNA-5, Genomic RNA Mutant, 387 nt).
[S68624] Gb(89)_vi:S68624 (satellite RNA J876-CARNA-5) (cucumber mosaic virus CMV, cucumber mosaic virus-associated RNA-5, necrogenic, Genomic RNA Mutant, 404 nt).
[X57582] Em(43)_vi:Cmvsata Gb(89)_vi:Cmvsata Cucumber mosaic virus satellite RNA. 6/94 334bp.
[X86408] Em(43)_vi:Cmvt8asat Gb(89)_vi:Cmvt8asat Cucumber mosaic virus (CMV) satellite RNA (strain T8A). 4/95 340bp.
[X86409] Em(43)_vi:Cmvt1sat Gb(89)_vi:Cmvt1sat Cucumber mosaic virus (CMV) satellite RNA (strain T1). 4/95 338bp.
[X86410] Em(43)_vi:Cmvt2sat Gb(89)_vi:Cmvt2sat Cucumber mosaic virus (CMV) satellite RNA (strainT2). 4/95 334bp.
[X86411] Em(43)_vi:Cmvt7sat Gb(89)_vi:Cmvt7sat Cucumber mosaic virus (CMV) satellite RNA (strain ). 4/95 335bp.
[X86412] Em(43)_vi:Cmvt22sat Gb(89)_vi:Cmvt22sat Cucumber mosaic virus (CMV) satellite RNA (strain T22). 4/95 339bp.
[X86413] Em(43)_vi:Cmvt16sat Gb(89)_vi:Cmvt16sat Cucumber mosaic virus (CMV) satellite RNA (strain T16). 4/95 335bp.
[X86414] Em(43)_vi:Cmvt6sat Gb(89)_vi:Cmvt6sat Cucumber mosaic virus (CMV) satellite RNA (strain T6). 4/95 335bp.
[X86415] Em(43)_vi:Cmvt4sat Gb(89)_vi:Cmvt4sat Cucumber mosaic virus (CMV) satellite RNA (strain T4). 4/95 340bp.
[X86416] Em(43)_vi:Cmvt12sat Gb(89)_vi:Cmvt12sat Cucumber mosaic virus (CMV) satellite RNA (strain T12). 4/95 334bp.
[X86417] Em(43)_vi:Cmvto79sa Gb(89)_vi:Cmvto79sa Cucumber mosaic virus (CMV) satellite RNA (strain To79). 4/95 336bp.
[X86418] Em(43)_vi:Cmvt57sat Gb(89)_vi:Cmvt57sat Cucumber mosaic virus (CMV) satellite RNA (strain T57). 4/95 334bp.
[X86419] Em(43)_vi:Cmvt27sat Gb(89)_vi:Cmvt27sat Cucumber mosaic virus (CMV) satellite RNA (strain ). 4/95 334bp.
[X86420] Em(43)_vi:Cmvt8sat Gb(89)_vi:Cmvt8sat Cucumber mosaic virus (CMV) satellite RNA (strain ). 4/95 335bp.
[X86421] Em(43)_vi:Cmvto80sa Gb(89)_vi:Cmvto80sa Cucumber mosaic virus (CMV) satellite RNA (strain TO80). 4/95 334bp.
[X86422] Em(43)_vi:Cmvto77sa Gb(89)_vi:Cmvto77sa Cucumber mosaic virus (CMV) satellite RNA (strain TO77). 4/95 334bp.
[X86423] Em(43)_vi:Cmvt59sat Gb(89)_vi:Cmvt59sat Cucumber mosaic virus (CMV) satellite RNA (strain T59). 4/95 334bp.
[X86424] Em(43)_vi:Cmvng71sa Gb(89)_vi:Cmvng71sa Cucumber mosaic virus (CMV) satellite RNA (strain NG71). 4/95 338bp.
[X86425] Em(43)_vi:Cmvcesat Gb(89)_vi:Cmvcesat Cucumber mosaic virus (CMV) satellite RNA (strain CE). 4/95 336bp.
[X86426] Em(43)_vi:Cmvpgsat Gb(89)_vi:Cmvpgsat Cucumber mosaic virus (CMV) satellite RNA (strain PG). 4/95 334bp.
[X86708] Em(43)_vi:Cmvt18sat Gb(89)_vi:Cmvt18sat Cucumber mosaic virus (CMV) satellite RNA (strain T18). 4/95 333bp.

GenBank records for nucleotide sequences; complete genome sequences.

Translation: Virions are associated with helper virus and dependent on co-infection of helper virus during replication, or are associated with helper virus, but independent from its functions during replication.

Biological Properties

Natural Host

Domain
Viral hosts belong to the Domain Eucarya.

Domain Eucarya
Kingdom Plantae.

Kingdom Plantae
Phylum Magnoliophyta (Angiosperms, Class Magnoliopsida (Dicotyledonae).

References

The following generic references are cited in the most recent ICTV Report.

PubMed References.

VIDEdB, the plant virus database developed at the Australian National University by Adrian J. Gibbs and collaborators, contains an earlier description with the number 268.



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DELTA - DEscription Language for TAxonomy developed by Dr Mike Dallwitz, Toni Paine and Eric Zurcher, CSIRO Entomology, Canberra, Australia. ICTVdB - The Universal Virus Database, developed for the International Committee on Taxonomy of Viruses by Dr Cornelia Büchen-Osmond is written in DELTA. The virus descriptions in ICTVdB are coded by, or using data from experts in the field of virology or members ICTV. The character list is the underlying code. All virus descriptions are based on the character list and natural language translations are automatically generated and formatted for display on the Web from the descriptions in DELTA-format. The description has been generated automatically from DELTA files. DELTA - DEscription Language for TAxonomy developed by Dr Mike Dallwitz, Toni Paine and Eric Zurcher, CSIRO Entomology, Canberra, Australia.

ICTVdB - The Universal Virus Database, developed for the International Committee on Taxonomy of Viruses (ICTV) by Dr Cornelia Büchen-Osmond, is written in DELTA. The virus descriptions in ICTVdB are coded by ICTV members and experts, or by the ICTVdB Management using data provided by the experts, the literature or the latest ICTV Report. The character list is the underlying code. All virus descriptions are based on the character list and natural language translations from the encoded descriptions are automatically generated and formatted for display on the Web.

Developer of the DELTA software: M. J. Dallwitz, T. Paine and E. Zurcher

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