[Home] [ICTV Taxonomy - Index of Viruses] [Virus Descriptions] [Character List] [Picture Gallery]
[Tutorial] [Online Data Retrieval & Identification] [Virus Isolate Registration & Submission] [Search]
Descriptions are generated automatically from the ICTVdB database including links. Some descriptions are only very basic and links may point to documents that are not yet published on the Web.

03.019.0.01.014.00.235.001. SARS-Coronavirus HSR1

Cite this publication as: ICTVdB Management (2006). 03.019.0.01.014.00.235.001. SARS-Coronavirus HSR1. In: ICTVdB - The Universal Virus Database, version 4. Büchen-Osmond, C. (Ed), Columbia University, New York, USA

Cite this site as: ICTVdB - The Universal Virus Database, version 4. http://www.ncbi.nlm.nih.gov/ICTVdb/ICTVdB/

Table of Contents

Isolate Description

Isolate designation: HSR1.
Isolation date: 03 July 2003.
Location: Viet Nam.

Host of Isolate and Habitat Details
Source of isolate: human.
Virus was isolated from sputum sample.
Virus was isolated from an adult.

Collection and Isolation Details
Virus was isolated by Dr Elisa Vicenzi. San Raffaele Scientific Institute; Via Olgettina n. 58; Milan; 20132; Italy; email: [mailto] vicenzi.elisa@hsr.it.

Reference to Isolation Report
Vicenzi, E., et. al. (2004) Coronaviridae and SARS-associated Coronavirus Strain HSR1. Emerging Infectious Diseases, Vol. 10, No. 3, pp. 413-418; PubMed ID 15109406.

Depositories and Collections

The isolate has been deposited at an institution at San Raffaele Scientific Institute, Milan, Italy.

Classification

This is a description of a vertebrate virus at the isolate level.

ICTVdB Virus Code: 03.019.0.01.014.00.235.001. Virus accession number: I039SARS. Former accession number: 4106C913.
NCBI Taxon Identifier NCBI Taxonomy ID: 235088.

Name, Synonyms and Lineage

Virus is assigned to species SARS coronavirus of the genus 03.019.0.01. Coronavirus; of the family 03.019. Coronaviridae; of the order 03. Nidovirales .

Virion Properties

Particles contain nucleic acid. Size and shape of virus has been determined by electron microscopy.

Virion Properties

Morphology

Virions consist of an envelope, spikes, and a nucleocapsid. During their life cycle, virions have an extracellular phase. Virus capsid is enveloped. Virions are spherical.

Nucleic Acid

The genome is not segmented and contains a single molecule of linear positive-sense, single-stranded RNA. The complete genome is 29751 nucleotides long. Sequence can be accessed from GenBank; the RNA is fully sequenced, complete sequence is 29751 nucleotides long. Sequence has the accession number [AY323977]. The 3'-terminus has a poly (A) tract 24 nucleotides in length.

Reference to nucleotide sequence in PubMed: reference(s). GenBank records for nucleotide sequences; complete genome sequences.

Biological Properties

Natural Host

Domain
Viral hosts belong to the Domain Eucarya.

Domain Eucarya
Kingdom Animalia.

Kingdom Animalia
Phylum Chordata.

Phylum Vertebrata
Subphylum Vertebrata; Class Mammalia.

Class Mammalia Order Primates;
Family Hominidae.
Virus infects Homo sapiens (human).

General Symptoms in Animals Infection can affect the respiratory system (specific symptoms are not reported). Signs and symptoms include pneumonia.

Severity and Occurrence of Disease

Host: Infection is apparent. The infection is clinically expressed.

References

Vicenzi, E., Canducci, F., Pinna, D., et. al. (2004) Coronaviridae and SARS-associated Coronavirus Strain HSR1. Emerging Infectious Diseases, Vol. 10, No. 3, p.

PubMed References.

Contributor

Data have been submitted online to ICTVdB on 01-12-05 by
Sara Mullins
American Type Culture Collection;
George Mason University;
PW II, 10801 University Boulevard;
Manassas; VA; 20110;
United States of America;
Tel: + 703-365-2700;
Fax: + 703-365-2701;
email: ICTVdB Management. Involved in the isolation of the virus was also Filippo Canducci; San Raffaele Scientific Institute, Milan, Italy; Debora Pinna; San Raffaele Scientific Institute, Milan, Italy; Nicasio Mancini; San Raffaele Scientific Institute, Milan, Italy.



Limit search to: Title & Body Title Document Path
Show Reverse Sort

DELTA - DEscription Language for TAxonomy developed by Dr Mike Dallwitz, Toni Paine and Eric Zurcher, CSIRO Entomology, Canberra, Australia. ICTVdB - The Universal Virus Database, developed for the International Committee on Taxonomy of Viruses by Dr Cornelia Büchen-Osmond is written in DELTA. The virus descriptions in ICTVdB are coded by, or using data from experts in the field of virology or members ICTV. The character list is the underlying code. All virus descriptions are based on the character list and natural language translations are automatically generated and formatted for display on the Web from the descriptions in DELTA-format. The description has been generated automatically from DELTA files. DELTA - DEscription Language for TAxonomy developed by Dr Mike Dallwitz, Toni Paine and Eric Zurcher, CSIRO Entomology, Canberra, Australia.

ICTVdB - The Universal Virus Database, developed for the International Committee on Taxonomy of Viruses (ICTV) by Dr Cornelia Büchen-Osmond, is written in DELTA. The virus descriptions in ICTVdB are coded by ICTV members and experts, or by the ICTVdB Management using data provided by the experts, the literature or the latest ICTV Report. The character list is the underlying code. All virus descriptions are based on the character list and natural language translations from the encoded descriptions are automatically generated and formatted for display on the Web.

Developer of the DELTA software: M. J. Dallwitz, T. Paine and E. Zurcher

ICTVdB and DELTA related References

Comments to ICTVdB Management
Last updated on 25 April 2006 by Cornelia Büchen-Osmond
Copyright © 2002    International Committee on Taxonomy of Viruses.    All rights reserved.


Additional access points to virus species lists, descriptions and images on the web:

Species catalogue                     iSpecies.org - a species search engine           a species search engine

Google Analytics      Google Analytics: activity view