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00.109.0.01.001.00.001. Heterosigma akashiwo RNA virus, isolate HaRNAV-SOG263

Cite this publication as: ICTVdB Management (2006). 00.109.0.01.001.00.001. Heterosigma akashiwo RNA virus, isolate HaRNAV-SOG263. In: ICTVdB - The Universal Virus Database, version 4. Büchen-Osmond, C. (Ed), Columbia University, New York, USA

Cite this site as: ICTVdB - The Universal Virus Database, version 4. http://www.ncbi.nlm.nih.gov/ICTVdb/ICTVdB/index.htm

Table of Contents

Isolate Description

Isolate designation: HaRNAV-SOG263.

Isolation date: July, 1996.

Location: not specified.

Isolate Host and Habitat Details Source of isolate: Heterosigma akashiwo.

Virus was isolated from seawater.

Collection and Isolation Details Virus was isolated by Ms Amy Chan. Earth and Ocean Sciences; University of British Columbia; 6270 University Blvd; Vancouver; BC; V6T 1Z4; Canada.

Reference of Isolation Report Reference: Andrew S. Lang, Alexander I. Culley and Curtis A. Suttle (2004). Genome sequence and characterization of a virus (HaRNAV) related to picorna-like viruses that infects the marine toxic bloom-forming alga Heterosigma akashiwo. Virology 320(2):206–217; PubMed ID 15016544.

Details on Isolate Sequencing

Virus genome has been sequenced; viral genome was isolated from purified virus stock. Virus sample used was initially grown in Heterosigma akashiwo strain NEPCC 522.

Classification

This is a description of an algal virus at the isolate level.

ICTVdB Virus Code: 00.109.0.01.001.00.001. Virus accession number: 10901101. Former accession number: 42F5C9F0. NCBI Taxon Identifier NCBI Taxonomy ID: 239720.

Name, Synonyms and Lineage

Acronym(s): HaRNAV-SOG263. Virus is assigned to species 00.109.0.01.001. Heterosigma akashiwo RNA virus of the genus 00.109.0.01. Marnavirus; family 00.109. Marnaviridae. Virus is not assigned to an order.

Morphology

Virions consist of a capsid and are not enveloped. Capsid is isometric, round and exhibits icosahedral symmetry.

Nucleic Acid

The genome is not segmented and contains a single molecule of positive-sense, single-stranded RNA. The RNA is fully sequenced, complete sequence is 8587 nucleotides long.
Sequence has the accession number AY337486.
NCBI reference genome has the accession number NC_005281.

GenBank records for nucleotide sequence(s); complete genome sequences.

Domain Viral hosts belong to the Domain Eucarya.

Domain Eucarya Kingdom Protoctistae.

Kingdom Protoctista Phylum Ochrophyta.

Host Classification Virus infects Class Raphidophyceae; Order Raphidomonadales; Family Raphidophyceae; Genus Heterosigma; Species akashiwo.

References

Andrew S. Lang, Alexander I. Culley and Curtis A. Suttle (2004). Genome sequence and characterization of a virus (HaRNAV) related to picorna-like viruses that infects the marine toxic bloom-forming alga Heterosigma akashiwo. Virology 320(2):206–217
doi:10.1016/j.virol.2003.10.015.

PubMed References.

Contributor

Data have been submitted online to ICTVdB on 7–08–2005, by
Curtis Suttle;
Earth and Ocean Sciences;
University of British Columbia;
6270 University Blvd;
Vancouver; BC; V6T 1Z4;
Canada;
email: csuttle@eos.ubc.ca.

Comments to ICTVdB Management



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DELTA - DEscription Language for TAxonomy developed by Dr Mike Dallwitz, Toni Paine and Eric Zurcher, CSIRO Entomology, Canberra, Australia. ICTVdB - The Universal Virus Database, developed for the International Committee on Taxonomy of Viruses by Dr Cornelia Büchen-Osmond is written in DELTA. The virus descriptions in ICTVdB are coded by, or using data from experts in the field of virology or members ICTV. The character list is the underlying code. All virus descriptions are based on the character list and natural language translations are automatically generated and formatted for display on the Web from the descriptions in DELTA-format. The description has been generated automatically from DELTA files. DELTA - DEscription Language for TAxonomy developed by Dr Mike Dallwitz, Toni Paine and Eric Zurcher, CSIRO Entomology, Canberra, Australia.

ICTVdB - The Universal Virus Database, developed for the International Committee on Taxonomy of Viruses (ICTV) by Dr Cornelia Büchen-Osmond, is written in DELTA. The virus descriptions in ICTVdB are coded by ICTV members and experts, or by the ICTVdB Management using data provided by the experts, the literature or the latest ICTV Report. The character list is the underlying code. All virus descriptions are based on the character list and natural language translations from the encoded descriptions are automatically generated and formatted for display on the Web.

Developer of the DELTA software: M. J. Dallwitz, T. Paine and E. Zurcher

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Comments to ICTVdB Management
Last updated on 25 April 2006 by Cornelia Büchen-Osmond
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