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Descriptions are generated automatically from the ICTVdB database including links. Some descriptions are only very basic and links may point to documents that are not yet published on the Web.

00.056.0.03.004.00.001.001. Garlic virus C, clone GM88

Cite this publication as: ICTVdB Management (2006). 00.056.0.03.004.00.001.001. Garlic virus C, clone GM88. In: ICTVdB - The Universal Virus Database, version 4. Büchen-Osmond, C. (Ed), Columbia University, New York, USA

Cite this site as: ICTVdB - The Universal Virus Database, version 4. http://www.ncbi.nlm.nih.gov/ICTVdb/ICTVdB/

Table of Contents

Isolate Description

Isolate designation: GM88.
Isolation date: 1995.
Location: Japan.

Host of Isolate and Habitat Details
Source of isolate: garlic (Allium sativum L).

Collection and Isolation Details
Virus was isolated by Kazuo Yamashita.

Classification

This is a description of a plant virus at the isolate level with data limited to classification details. If you have primary data on this virus, please submit them to ICTVdB using the online data entry systems or contact the ICTVdB management.

ICTVdB Virus Code: 00.056.0.03.004.00.001.001. Virus accession number: 56003104. Obsolete virus code: 00.091.0.01.004.00.001.001.; accession number: 91001104.
NCBI Taxon Identifier NCBI Taxonomy ID: 39058.

Name, Synonyms and Lineage

Acronym(s): (GarVB-GM88). Virus is assigned to the genus Allexivirus; family 00.056. Flexiviridae; not assigned to an order.

Virion Properties

Morphology

Virions consist of a capsid. Virus capsid is not enveloped. Capsid/nucleocapsid is elongated with helical symmetry. The capsid is filamentous, flexuous.

Nucleic Acid

The genome is monopartite. Only one particle size of linear, positive-sense, single-stranded RNA is recovered. The RNA is partially sequenced and sequenced region is 2518 nucleotides long. Sequence has the accession number [D49443].

GenBank records for nucleotide sequences; complete genome sequences.

Proteins

The viral genome encodes structural proteins and non-structural proteins.

Biological Properties

Natural Host

Domain
Viral hosts belong to the Domain Eucarya.

Domain Eucarya
Kingdom Plantae.

Kingdom Plantae
Phylum Magnoliophyta (Angiosperms, Class Liliopsida (Monocotyledonae).

Class Liliopsida (Monocotyledonae)
Subclass LILIIDAE; Order Liliales; Family Alliaceae. Virus found in Allium sativum (garlic) [TaxID 4682].

References

PubMed References.

Taxonomic Proposals and Changes

Previous classification under Potyvirus.



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DELTA - DEscription Language for TAxonomy developed by Dr Mike Dallwitz, Toni Paine and Eric Zurcher, CSIRO Entomology, Canberra, Australia. ICTVdB - The Universal Virus Database, developed for the International Committee on Taxonomy of Viruses by Dr Cornelia Büchen-Osmond is written in DELTA. The virus descriptions in ICTVdB are coded by, or using data from experts in the field of virology or members ICTV. The character list is the underlying code. All virus descriptions are based on the character list and natural language translations are automatically generated and formatted for display on the Web from the descriptions in DELTA-format. The description has been generated automatically from DELTA files. DELTA - DEscription Language for TAxonomy developed by Dr Mike Dallwitz, Toni Paine and Eric Zurcher, CSIRO Entomology, Canberra, Australia.

ICTVdB - The Universal Virus Database, developed for the International Committee on Taxonomy of Viruses (ICTV) by Dr Cornelia Büchen-Osmond, is written in DELTA. The virus descriptions in ICTVdB are coded by ICTV members and experts, or by the ICTVdB Management using data provided by the experts, the literature or the latest ICTV Report. The character list is the underlying code. All virus descriptions are based on the character list and natural language translations from the encoded descriptions are automatically generated and formatted for display on the Web.

Developer of the DELTA software: M. J. Dallwitz, T. Paine and E. Zurcher

ICTVdB and DELTA related References

Comments to ICTVdB Management
Last updated on 25 April 2006 by Cornelia Büchen-Osmond
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