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Descriptions are generated automatically from the ICTVdB database including links. Some descriptions are only very basic and links may point to documents that are not yet published on the Web.

00.056.0.03.002. Garlic virus A

Cite this publication as: ICTVdB Management (2006). 00.056.0.03.002. Garlic virus A. In: ICTVdB - The Universal Virus Database, version 4. Büchen-Osmond, C. (Ed), Columbia University, New York, USA

Cite this site as: ICTVdB - The Universal Virus Database, version 4. http://www.ncbi.nlm.nih.gov/ICTVdb/ICTVdB/

Table of Contents

Host of Isolate and Habitat Details
Source of isolate: Allium sativum (garlic).

Classification

This is a description of a plant virus at the species level with data limited to classification details. If you have primary data on this virus, please submit them to ICTVdB using the online data entry systems or contact the ICTVdB management.

ICTVdB Virus Code: 00.056.0.03.002. Virus accession number: 56003002. Obsolete virus code: 00.091.0.01.002.; superceded accession number: 91001002; 91001002.
NCBI Taxonomy Identifier Taxon ID: 12433.

Name, Synonyms and Lineage

The taxon has the accepted ICTV name.

ICTV approved acronym: (GarVA). Virus is an ICTV approved species. Virus is of the genus 00.056.0.03. Allexivirus in the family 00.056. Flexiviridae; not assigned to an order.

Virion Properties

Morphology

Virions consist of a capsid. Virus capsid is not enveloped. Capsid/nucleocapsid is elongated with helical symmetry. The capsid is filamentous, flexuous.

Nucleic Acid

The genome is monopartite. Only one particle size of linear, positive-sense, single-stranded RNA is recovered. Sequence can be accessed from EBI-EMBL, GenBank, and Rothamsted; the RNA is fully sequenced, complete sequence is 8660 nucleotides long. Sequence has the accession number
[AB010300] (D11157)., and the NCBI reference genome has the accession number [NC_003375].

Reference to nucleotide sequence in PubMed: reference(s). GenBank records for nucleotide sequences; complete genome sequences.

Proteins

The viral genome encodes structural proteins and non-structural proteins.

Biological Properties

Natural Host

Domain
Viral hosts belong to the Domain Eucarya.

Domain Eucarya
Kingdom Plantae.

Kingdom Plantae
Phylum Magnoliophyta (Angiosperms, Class Liliopsida (Monocotyledonae).

Class Liliopsida (Monocotyledonae)
Subclass LILIIDAE; Order Liliales; Family Alliaceae. Virus found in Allium sativum (garlic) [TaxID 4682].

References

The following generic references are cited in the most recent ICTV Report.

PubMed References.



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DELTA - DEscription Language for TAxonomy developed by Dr Mike Dallwitz, Toni Paine and Eric Zurcher, CSIRO Entomology, Canberra, Australia. ICTVdB - The Universal Virus Database, developed for the International Committee on Taxonomy of Viruses by Dr Cornelia Büchen-Osmond is written in DELTA. The virus descriptions in ICTVdB are coded by, or using data from experts in the field of virology or members ICTV. The character list is the underlying code. All virus descriptions are based on the character list and natural language translations are automatically generated and formatted for display on the Web from the descriptions in DELTA-format. The description has been generated automatically from DELTA files. DELTA - DEscription Language for TAxonomy developed by Dr Mike Dallwitz, Toni Paine and Eric Zurcher, CSIRO Entomology, Canberra, Australia.

ICTVdB - The Universal Virus Database, developed for the International Committee on Taxonomy of Viruses (ICTV) by Dr Cornelia Büchen-Osmond, is written in DELTA. The virus descriptions in ICTVdB are coded by ICTV members and experts, or by the ICTVdB Management using data provided by the experts, the literature or the latest ICTV Report. The character list is the underlying code. All virus descriptions are based on the character list and natural language translations from the encoded descriptions are automatically generated and formatted for display on the Web.

Developer of the DELTA software: M. J. Dallwitz, T. Paine and E. Zurcher

ICTVdB and DELTA related References

Comments to ICTVdB Management
Last updated on 25 April 2006 by Cornelia Büchen-Osmond
Copyright © 2002    International Committee on Taxonomy of Viruses.    All rights reserved.


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