Cite this publication as: ICTVdB Management (2006). 00.010.0.01.001. Alfalfa mosaic virus. In: ICTVdB - The Universal Virus Database, version 4. Büchen-Osmond, C. (Ed), Columbia University, New York, USA
Cite this site as: ICTVdB - The Universal Virus Database, version 4. http://www.ncbi.nlm.nih.gov/ICTVdb/ICTVdB/
Host of Isolate and Habitat Details
Source of
isolate: Medicago sativa.
Natural host and symptoms
the virus naturally infects many species
including:
Caryopteris incana white fleck.
Cicer arietinum wilting.
Lycopersicon esculentum severe necrosis.
Apium graveolens, A graveolens var. rapaceum, Lactuca sativa, Malva parviflora, Trifolium incarnatum, T. repens, Viburnum opulus mosaic.
Medicago sativa mosaic, mottle, malformation, but often symptomless during summer.
Nicotiana tabacum, Lupinus ssp. mosaic and mottle.
Phaseolus vulgaris, Vigna unguiculata, V. radiata, Astragalus glycyphyllos, Glycine max, Lablab purpureus, Lens culinaris, Capsicum annuum necrotic or chlorotic local lesions, sometimes mosaic.
Philadelphus sp. white mottle.
Pisum sativum necrosis.
Solanum tuberosum calico and tuber necrosis.
Reference to Isolation Report
Weimer (1931).
ICTVdB Virus Code: 00.010.0.01.001. Virus accession number:
10001001. Obsolete virus code: 10.0.1.0.001; superceded accession number:
10010001.
NCBI Taxon Identifier NCBI Taxonomy ID:
12321.
Electron micrographs of Bromoviridae.
Electron micrographs of plant viruses are copyrighted by Dr RG Milne
Istituto di Virologia Vegetale, Strada delle Cacce 73,
10135 Torino, Italy.
Electron microscopic preparation and references: Virus preparation contains many virions. Most negative stains disrupt virions unless they are first fixed with formaldehyde. The virions of some strains are stable in AM (Price and McLean, 1982). Reference for electron microscopic methods: Van Vloten-Doting and Jaspars (1972).
Capsid structures, detailed structural and computational analysis are found in the Protein Data Bank (PDB) using VIPERdB, the VIrus Particle ExploreR for Alfalfa mosaic virus
RNA-2 is fully
sequenced, complete sequence is 2593 nucleotides long and has the
accession number
[K02702]Gb(84)_vi:MAACG2Z Alfalfa mosaic virus (strain 425 Leiden)
RNA 2 of complete genome. 9/88 2,593bp.
[M25005]Em(40)_vi:ALMAARNAB
Gb(84)_vi:MAARNAB Alfalfa mosaic virus RNA 2, 3' end. 4/92 103bp.
[M36389]Em(40)_vi:ALMAAR02
Gb(84)_vi:MAARNA2A Alfalfa mosaic virus (strain AlMV-S) 5' end of RNA-2. 12/90
108bp.
[M36390]Em(40)_vi:ALMAAR03
Gb(84)_vi:MAARNA2B Alfalfa mosaic virus (strain AlMV-B) 5' end of RNA-2. 12/90
109bp.
[V00045]Em(40)_vi:ALALM2
Gb(84)_vi:ALALM2 5' end of alfalfa mosaic virus RNA 2. 5/94 13bp.
[V00050]Em(40)_vi:ALALM7
Gb(84)_vi:ALALM7 3' end of alfalfa mosaic virus RNA 2. 7/91 228bp.
[X01572]Em(40)_vi:A1MVRNA2
Gb(84)_vi:A1MVRNA2 Alfalfa mosaic virus (A1M4) RNA 2. 7/91 2,593bp.
RNA-3 is fully sequenced, complete sequence is 2037 nucleotides long
and has the accession numbers
[J02001] Gb(84)_vi:MAARNA23 alfalfa mosaic virus (Q strain) rna2 3'
end. 2/85 228bp.
[J02003]
Em(40)_vi:ALRNA3 Gb(84)_vi:MAARNA3 alfalfa mosaic virus RNA 3 35kd protein
leader sequence. 4/90 318bp.
[J02005]
Gb(84)_vi:MAARNA35 alfalfa mosaic virus (strain 425) rna3 5' end. 2/85 101bp.
[K02703]
Em(40)_vi:ALMRNA3 Gb(84)_vi:MAACG3Z Alfalfa mosaic virus (strain 425 Madison)
RNA 3 of complete genome. 4/90 2,037bp
[K03542]
Em(40)_vi:MAARNA3L Gb(84)_vi:MAARNA3L Alfalfa mosaic virus RNA 3 encoding viral
coat protein, complete. B. 4/90 2,142bp.
[L00161]
Gb(84)_vi:MAARNA33 Alfalfa mosaic virus (strain Q) RNA 3, 3' end. 8/86 230bp.
[M36391]
Em(40)_vi:ALMAAR04 Gb(84)_vi:MAARNA3B Alfalfa mosaic virus (strain AlMV-S) 5'
end of RNA-3. 12/90 305bp.
[M36392]
Em(40)_vi:ALMAAR05 Gb(84)_vi:MAARNA3C Alfalfa mosaic virus (strain AlMV-B) 5'
end of RNA-3. 12/90 290bp.
[S55890]
Em(40)_vi:S55890 Gb(84)_vi:S55890 RNA-3 coat protein homologue, alfalfa mosaic
virus RNA-3 32K protein homologue (RNA-2) (raspberry bushy dwarf virus, Genomic
RNA, 2231 nt).
[V00046]
Em(40)_vi:ALALM3 Gb(84)_vi:ALALM3 5' end of alfalfa mosaic virus RNA 3. 5/94
101bp.
[V00047]
Em(40)_vi:ALALM4 Gb(84)_vi:ALALM4 Intercistronic junction in alfalfa mosaic
virus RNA 3. 5/94 122bp.
[V00051]
Em(40)_vi:ALALM8 Gb(84)_vi:ALALM8 3' end of alfalfa mosaic virus RNA 3. 7/91
230bp.
[X00819]
Em(40)_vi:ALAM19 Gb(84)_vi:ALAM19 Alfalfa mosaic virus (strain S) complete RNA 3
sequence. 9/93 2,055bp.
[M28374]
Em(43)_vi:Maatbts7a Gb(89)_vi:Maatbts7a Alfalfa mosaic virus (clone 143)
temperature-sensitive mutant Tbts7 RNA3 (coat protein-encoding
[M28375]
Em(43)_vi:Maatbts7b Gb(89)_vi:Maatbts7b Alfalfa mosaic virus (clone 112)
temperature-sensitive mutant Tbts7 RNA3 (coat protein-encoding), 5' end
fragment.
RNA-4 is the encapsidated mRNA has been fully
sequenced, complete sequence is 881 nucleotides long (RNA-4).
Has the accession number
[L00162] Em(40)_vi:ALMAARNA4 Gb(84)_vi:MAARNA4 Alfalfa mosaic virus
(strain 425 Leiden) RNA 4 encoding viral coat protein. 5/94 964bp.
[M10826]
Em(40)_vi:MAARNA01 Gb(84)_vi:MAARNA4AX Alfalfa mosaic virus (A1MV) RNA 4, 3'
terminal fragment 29C. 7/91 91bp.
[M10851]
Em(40)_vi:MAARNA4A Gb(84)_vi:MAARNA4A Alfalfa mosaic virus RNA 4, 5' terminal
region. 7/89 74bp.
[M25004]
Em(40)_vi:ALMAARNAA Gb(84)_vi:MAARNAA Alfalfa mosaic virus RNA 3 or 4, 3' end.
4/92 113bp.
[M25452]
Em(40)_vi:ALMAARNA1 Gb(84)_vi:MAARNA4D Alfalfa mosaic virus RNA 4 RNA fragment.
4/92 62bp.
[M59241]
Em(40)_vi:ALMAA32K Gb(84)_vi:MAA32KDMP Alfalfa mosaic virus 32 kDa movement
protein and coat protein RNA, complete cds. 8/92 2,188bp.
[U12509]
Em(43)_vi:Am12509 Gb(89)_vi:Amu12509 Alfalfa mosaic virus NZ1 RNA4 coat protein
mRNA, complete cds. 8/94 876bp.
[U12510]
Em(43)_vi:Am12510 Gb(89)_vi:Amu12510 Alfalfa mosaic virus NZ2 RNA4 coat protein
mRNA, complete cds. 8/94 876bp.
[V00048]
Em(40)_vi:ALALM5 Gb(84)_vi:ALALM5 alfalfa mosaic virus RNA 4 coding for the coat
protein. 5/94 881bp.
Subgenomic RNA-4 is an mRNA derived from RNA-3 negative strand template. The genome has a base ratio of 23 % guanine; 25 % adenine; 23 % cytosine; 29 % uracil. The genome sequence has termini with of RNA-3 has 7 cross-linked hairpin ends (at 3'-end non-coding region). Nucleotide sequences at the 3'-terminus are similar (of all four RNAs). The 5'-end of the genome has a methylated nucleotide cap; cap sequence type is m7G5'ppp5 ('Gp). The 3'-terminus has conserved nucleotide sequences; sequence has 145 nucleotides in length; in all RNA species. The 3'-terminus has no poly (A) tract. The 3'-terminus has no tRNA-like structure. The genome has no intergenic poly (A) region. The multipartite genome is divided among more than one type of particle and the segments are distributed between 3-7 different types of particles. The largest particles contain 3 types each one molecule of RNA-1 (sedimenting component B). The medium sized particles contain each one molecule of RNA-2 (sedimenting component M). The smallest particles contain each one molecule of RNA3 (sedimenting component Tb), or two molecules of RNA-4 (sedimenting component Ta). Reference to nucleotide sequence Cornelissen et al. (1983, Collot et al. (1977, Barker et al. (1983, Ravelonandro et al. (1984, Gunn and Symons (1980, Koper-Zwarthoff et al. (1980, Houwing and Jaspars (1982).
GenBank records for nucleotide sequences; complete genome sequences.
The viral genome encodes structural proteins and non-structural proteins. Virions consist of 1 structural protein(s) located in the capsid.
Structural Proteins: Capsid protein coat. Capsid protein has a molecular mass of 24250 Da; is involved in viral encapsidation and involved in protein movement.
Reference to method of preparation: Kruseman et al. (1971).
Reference to amino acid sequence or composition Van Beynum (1977) for AMV-425 and Castel (1979) for AMV-VRU.
Transcription: Sub-genomic RNA is present in infected cells; encoding the coat protein.
Translation: Coat protein mRNA is translated in the cytoplasm.
Domain
Viral hosts belong to the Domain
Eucarya.
Domain Eucarya
Kingdom Plantae.
Kingdom Plantae
Phylum Magnoliophyta
(Angiosperms, Class Magnoliopsida (Dicotyledonae).
Class Magnoliopsida (Dicotyledonae)
Subclass
ROSIDAE; Order Fabales;
Family Fabaceae
(~Leguminosae-Papilionoideae) Medicago sativa.
Vector Transmission:
Virus is transmitted by arthropods, by insects
of the order Hemiptera, family Aphididae; Myzus persicae and at least 13
other species. Virus is transmitted in a non-persistent manner.
Host:
Experimentally infected hosts mainly show symptoms of
necrotic local lesions, mottles or ringspots.
Experimentally infected insusceptible Hosts: Families containing insusceptible hosts: Chenopodiaceae, Compositae, Cruciferae, or Leguminosae-Caesalpinioideae, Leguminosae-Papilionoideae, Solanaceae. Species inoculated with virus that do not show signs of susceptibility: Atriplex hortensis, Brassica oleracea var. capitata, Cassia tora, Chenopodium capitatum, Chenopodium foetidum, Datura stramonium, Hyoscyamus niger, Lotus corniculatus, Nicandra physalodes, Sesbania exaltata, Verbesina encelioides, Vicia sativa, Vicia villosa.
Chenopodium amaranticolor, C. quinoa chlorotic local lesions; systemic chlorotic and necrotic flecks which distinguish this virus from cucumber mosaic virus.
Ocimum basilicum systemic yellow mosaic.
Phaseolus vulgaris most strains induce necrotic local lesions, some induce chlorotic local lesions or a systemic mottle, vein necrosis and leaf malformation.
Pisum sativum local lesions and/or wilting of inoculated leaves; systemic stem necrosis and plant death.
Vicia faba black necrotic local lesions, stem necrosis and plant death, a few isolates induce systemic mottle.
Vigna unguiculata necrotic local lesions, not systemic, some isolates induce various systemic symptoms.
Nicotiana tabacum necrotic and chlorotic local lesions (some strains induce no local symptoms, systemic mottle, vein banding, ringspots, rarely malformation.
References to host data: Thornberry (1966, Hull (1969, Schmelzer et al. (1973).
Histopathology: Virus can be best detected in all parts of the host plant. Virions are found in the cytoplasm and chloroplast (within in cytoplasmic invaginations).
Cytopathology: Inclusions are cytoplasmic present in infected cells. Inclusion bodies in the host cell are found in the cytoplasm. Inclusions are vacuolated bodies derived from spheroidal and granular bodies, vacuolated or non-vacuolated bodies containing nucleoprotein and hexagonal crystals. Inclusions contain mature virions (aggregated). Also tubular bodies are found in the nucleus (Hull et al., 1969).
Barker, R.F., Jarvis, N.P., Thompson, D.U., Loesch-Fries, LS and Hall, T.C. (1983). Nucl. Acids Res. 11: 2881.
Bos, L. and Jaspars, E.M.J. (1971). CMI/AAB Descr. Pl. Viruses No. 46, 4 pp.
Castel, A, Kraal, B., de Graaf, J.M. and Bosch, L. (1979). Eur. J. Biochem. 102: 125.
Collot, D., Dupin, A and Duranton, H. (1977). Biochim. biophys. Acta 492: 260.
Cornelissen, B.J.C., Brederode, FTh, Veenemann, GH , van Boom, J.H. and Bol, J.F. (1983). Nucl. Acids Res. 11: 3019.
Edwardson, J.R. and Christie, R.G. (1986). Fla Agric. Exp. Stn Monogr. No. 14, p. 30.
Garran, J. and Gibbs, AJ. (1982). Aust. J. agric. Res. 33: 657.
Gibbs, AJ. (1962). Pl. Path. 11: 167.
Gunn, MR and Symons, RH (1980). FEBS Lett. 109: 145.
Houwing, CJ and Jaspars, E.M.J. (1982). Biochemistry 21: 3408.
Hull, R. (1969). Adv. Virus Res. 15, p. 365.
Hull, R., Hills, G.J. and Plaskitt, (1969). J. Ultrastruct. Res. 24: 465.
Jaspars E.M.J. and Bos, L. (1980). CMI/AAB Descr. Pl. Viruses No. 229, 7 pp.
Koper-Zwarthoff, EC, Brederode, FTh, Veenemann, G. and van Boom, J.H. (1980). Nucl. Acids Res. 8: 5635.
Kruseman, J., Jaspars, E.M.J., Bol, J.F., Brederode, FTh and Veldstra, H. (1971). Biochemistry 10: 447.
Price, L.K. and McLean, GD (1982). Australas. Pl. Path. 11: 48.
Ravelonandro, M., Pinck, M. and Pinck, L. (1984). Biochimie 66: 395.
Schmelzer, K., Schmidt, H.B. and Beczner, L. (1973). Biol. Zbl. 92: 211.
Thornberry, HH (1966). In: Index of Plant Virus Diseases. U.S. Dept Agric. Hdbk No. 307, p.264.
Van Beynum, G.MA, de Graaf, J.M., Castel, A, Kraal, B. and Bosch, L. (1977). Eur. J. Biochem. 72: 63.
Van Vloten-Doting, L. and Jaspars, E.M.J. (1972). Virology 48: 699.
Weimer, J.L. (1931). Phytopathology 21: 122.
The following generic references are cited in the most recent ICTV Report.
VIDEdB, the plant virus database developed at the Australian National University by Adrian J. Gibbs and collaborators, contains an earlier description with the number 9 by L. van Vloten-Doting, 1981. Revised 1987 by AJ. Gibbs.
A description of the virus is found in DPV, a database for plant viruses developed by the Association of Applied Biologists (AAB), with the number 2292671 (009).
| | The description has been generated automatically from DELTA files. | |
ICTVdB - The Universal Virus Database, developed for the International Committee on Taxonomy of Viruses (ICTV) by Dr Cornelia Büchen-Osmond, is written in DELTA. The virus descriptions in ICTVdB are coded by ICTV members and experts, or by the ICTVdB Management using data provided by the experts, the literature or the latest ICTV Report. The character list is the underlying code. All virus descriptions are based on the character list and natural language translations from the encoded descriptions are automatically generated and formatted for display on the Web.
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