| Actinobacteria |
Phylum |
GenBank entry |
Proteins |
GGDEF |
EAL |
HD-GYP |
PilZ |
Correlation |
| Bifidobacterium longum |
Actino |
AE014295 |
1727 |
0 |
0 |
0 |
0 |
Yes |
| Corynebacterium diphtheriae |
Actino |
BX248353 |
2272 |
0 |
0 |
0 |
0 |
Yes |
| Corynebacterium efficiens |
Actino |
BA000035 |
2950 |
0 |
0 |
0 |
0 |
Yes |
| Corynebacterium glutamicum |
Actino |
BA000036 |
2993 |
1 |
1 |
0 |
0 |
No |
| Leifsonia xyli |
Actino |
AE016822 |
2030 |
0 |
0 |
0 |
0 |
Yes |
| Mycobacterium avium |
Actino |
AE016958 |
4350 |
4* |
3 |
1 |
0 |
No |
| Mycobacterium bovis |
Actino |
BX248333 |
3920 |
1 |
2 |
0 |
0 |
No |
| Mycobacterium leprae |
Actino |
AL450380 |
1605 |
3 |
2 |
0 |
0 |
No |
| Mycobacterium tuberculosis |
Actino |
AL123456 |
3927 |
1 |
2 |
0 |
0 |
No |
| Nocardia farcinica |
Actino |
AP006618 |
5924 |
8 |
2 |
0 |
0 |
No |
| Propionibacterium acnes |
Actino |
AE017283 |
2297 |
0 |
0 |
0 |
0 |
Yes |
| Streptomyces avermitilis |
Actino |
BA000030 |
7671 |
7* |
5 |
1 |
0 |
No |
| Streptomyces coelicolor |
Actino |
AL645882 |
8154 |
7* |
5 |
1 |
0 |
No |
| Symbiobacterium thermophilum |
Actino |
AP006840 |
3337 |
9 |
3 |
4 |
1 |
Yes |
| Tropheryma whipplei |
Actino |
BX072543 |
783 |
0 |
0 |
0 |
0 |
Yes |
| Cyanobacteria |
Phylum |
GenBank entry |
Proteins |
GGDEF |
EAL |
HD-GYP |
PilZ |
Correlation |
| Gloeobacter violaceus |
Cyano |
BA000045 |
4430 |
1 |
0 |
1 |
1 |
Yes |
| Nostoc sp. PCC 7120 |
Cyano |
BA000019 |
6055 |
14 |
7 |
2 |
0 |
No |
| Prochlorococcus marinus CCMP1375 |
Cyano |
AE017126 |
1882 |
0 |
0 |
0 |
0 |
Yes |
| Synechococcus elongatus PCC 6301 |
Cyano |
AP008231 |
2525 |
17 |
9 |
2 |
2 |
Yes |
| Synechococcus sp. WH 8102 |
Cyano |
BX548020 |
2517 |
0 |
0 |
0 |
0 |
Yes |
| Synechocystis sp. PCC 6803 |
Cyano |
BA000022 |
3166 |
22 |
13 |
2 |
0 |
No |
| Thermosynechococcus elongatus |
Cyano |
BA000039 |
2475 |
9* |
5 |
1 |
3 |
Yes |
| Alpha-proteobacteria |
Phylum |
GenBank entry |
Proteins |
GGDEF |
EAL |
HD-GYP |
PilZ |
Correlation |
| Agrobacterium tumefaciens |
Alpha |
AE008688 |
5402 |
27* |
14* |
1 |
3 |
Yes |
| Anaplasma marginale |
Alpha |
CP000030 |
949 |
1 |
0 |
0 |
0 |
No |
| Bartonella henselae |
Alpha |
BX897699 |
1488 |
1 |
1 |
0 |
0 |
No |
| Bartonella quintana |
Alpha |
BX897700 |
1142 |
1 |
1 |
0 |
0 |
No |
| Bradyrhizobium japonicum |
Alpha |
BA000040 |
8317 |
35 |
27 |
3 |
13 |
Yes |
| Brucella melitensis |
Alpha |
AE008917 |
3198 |
9 |
5 |
0 |
0 |
No |
| Brucella suis |
Alpha |
AE014291 |
3271 |
8 |
5 |
0 |
0 |
No |
| Caulobacter crescentus |
Alpha |
AE005673 |
3737 |
10* |
10 |
0 |
2 |
Yes |
| Mesorhizobium loti |
Alpha |
BA000012 |
7275 |
32 |
18 |
1 |
2 |
Yes |
| Nitrobacter winogradskyi |
Alpha |
CP000115 |
3122 |
8 |
6 |
1 |
4 |
Yes |
| Pelagibacter ubique |
Alpha |
CP000084 |
1354 |
0 |
0 |
0 |
0 |
Yes |
| Rhodopseudomonas palustris |
Alpha |
BX571963 |
4813 |
36 |
18 |
2 |
8 |
Yes |
| Rickettsia conorii |
Alpha |
AE006914 |
1374 |
1 |
1 |
0 |
0 |
No |
| Rickettsia prowazekii |
Alpha |
AJ235269 |
835 |
1 |
1 |
0 |
0 |
No |
| Rickettsia typhi |
Alpha |
AE017197 |
838 |
1 |
1 |
0 |
0 |
No |
| Silicibacter pomeroyi |
Alpha |
CP000031 |
4252 |
5 |
2 |
0 |
0 |
No |
| Sinorhizobium meliloti |
Alpha |
AL591688 |
6205 |
17* |
13* |
0 |
2 |
Yes |
| Wolbachia endosymbiont of Drosophila |
Alpha |
AE017196 |
1195 |
1 |
0 |
0 |
0 |
No |
| Zymomonas mobilis |
Alpha |
AE008692 |
1998 |
4 |
3 |
0 |
1 |
Yes |
| Beta-proteobacteria |
Phylum |
GenBank entry |
Proteins |
GGDEF |
EAL |
HD-GYP |
PilZ |
Correlation |
| Azoarcus sp. EbN1 |
Beta |
CR555306 |
4603 |
26 |
23 |
5 |
1 |
Yes |
| Bordetella bronchiseptica |
Beta |
BX470250 |
4994 |
15 |
9 |
2 |
1 |
Yes |
| Bordetella parapertussis |
Beta |
BX470249 |
4185 |
13 |
9 |
2 |
1 |
Yes |
| Bordetella pertussis |
Beta |
BX470248 |
3436 |
7 |
3 |
1 |
1 |
Yes |
| Burkholderia mallei |
Beta |
CP000011 |
4764 |
8 |
8 |
2 |
3 |
Yes |
| Burkholderia pseudomallei |
Beta |
BX571965 |
5728 |
10 |
11 |
2 |
3 |
Yes |
| Chromobacterium violaceum |
Beta |
AE016825 |
4407 |
43 |
26 |
11 |
4 |
Yes |
| Neisseria gonorrhoeae |
Beta |
AE004969 |
2002 |
0 |
0 |
0 |
0 |
Yes |
| Neisseria meningitidis |
Beta |
AE002098 |
2079 |
0 |
0 |
0 |
0 |
Yes |
| Nitrosomonas europaea |
Beta |
AL954747 |
2461 |
6 |
9 |
0 |
1 |
Yes |
| Ralstonia solanacearum |
Beta |
AL646052 |
5116 |
22* |
14 |
2 |
2 |
Yes |
| Gamma-proteobacteria |
Phylum |
GenBank entry |
Proteins |
GGDEF |
EAL |
HD-GYP |
PilZ |
Correlation |
| Acinetobacter sp. ADP1 |
Gamma |
CR543861 |
3325 |
10 |
4 |
0 |
1 |
Yes |
| Buchnera aphidicola str. APS |
Gamma |
BA000003 |
574 |
0 |
0 |
0 |
0 |
Yes |
| Candidatus Blochmannia floridanus |
Gamma |
BX248583 |
583 |
0 |
0 |
0 |
0 |
Yes |
| Coxiella burnetii |
Gamma |
AE016828 |
2046 |
0* |
0 |
0 |
0 |
Yes |
| Erwinia carotovora |
Gamma |
BX950851 |
4472 |
16* |
11 |
0 |
2 |
Yes |
| Escherichia coli K12 |
Gamma |
U00096 |
4242 |
19 |
17 |
0 |
2 |
Yes |
| Escherichia coli O157:H7 |
Gamma |
BA000007 |
5253 |
19 |
14 |
0 |
2 |
Yes |
| Francisella tularensis |
Gamma |
AJ749949 |
1804 |
0 |
0 |
0 |
0* |
Yes |
| Haemophilus ducreyi |
Gamma |
AE017143 |
1717 |
0 |
0 |
0 |
0 |
Yes |
| Haemophilus influenzae |
Gamma |
L42023 |
1711 |
0 |
0 |
0 |
0 |
Yes |
| Idiomarina loihiensis |
Gamma |
AE017340 |
2640 |
33 |
20 |
1 |
6 |
Yes |
| Legionella pneumophila |
Gamma |
AE017354 |
2942 |
19 |
14 |
0 |
2 |
Yes |
| Mannheimia succiniciproducens |
Gamma |
AE016827 |
2384 |
0 |
0 |
0 |
0 |
Yes |
| Methylococcus capsulatus |
Gamma |
AE017282 |
2959 |
16 |
12 |
1 |
1 |
Yes |
| Pasteurella multocida |
Gamma |
AE004439 |
2015 |
0 |
0 |
0 |
0 |
Yes |
| Photobacterium profundum |
Gamma |
CR354531 |
5480 |
32* |
16 |
2 |
5 |
Yes |
| Photorhabdus luminescens |
Gamma |
BX470251 |
4683 |
0 |
0 |
0 |
0 |
Yes |
| Pseudomonas aeruginosa |
Gamma |
AE004091 |
5567 |
33 |
21 |
3 |
8 |
Yes |
| Pseudomonas putida |
Gamma |
AE015451 |
5350 |
36 |
21 |
2 |
6 |
Yes |
| Pseudomonas syringae |
Gamma |
AE016853 |
5608 |
35 |
21 |
1 |
7 |
Yes |
| Salmonella enterica serovar Paratyphi |
Gamma |
CP000026 |
4093 |
13 |
15 |
0 |
2 |
Yes |
| Salmonella enterica serovar Typhi |
Gamma |
AL513382 |
4758 |
12 |
16 |
0 |
2 |
Yes |
| Salmonella typhimurium LT2 |
Gamma |
AE006468 |
4527 |
12 |
15 |
0 |
2 |
Yes |
| Shewanella oneidensis |
Gamma |
AE014299 |
4467 |
52* |
27* |
9 |
4 |
Yes |
| Shigella flexneri |
Gamma |
AE005674 |
4441 |
8 |
8 |
0 |
1 |
Yes |
| Vibrio cholerae |
Gamma |
AE003852 |
3835 |
41 |
22 |
9 |
4 |
Yes |
| Vibrio parahaemolyticus |
Gamma |
BA000031 |
4832 |
44* |
29 |
5 |
4 |
Yes |
| Vibrio vulnificus |
Gamma |
AE016795 |
5024 |
66 |
33 |
13 |
5 |
Yes |
| Wigglesworthia glossinidia |
Gamma |
BA000021 |
617 |
0 |
0 |
0 |
0 |
Yes |
| Xanthomonas axonopodis |
Gamma |
AE008923 |
4427 |
30 |
14 |
3 |
4 |
Yes |
| Xanthomonas campestris |
Gamma |
AE008922 |
4181 |
31 |
14 |
3 |
4 |
Yes |
| Xylella fastidiosa 9a5c |
Gamma |
AE003849 |
2832 |
3 |
3 |
1 |
2 |
Yes |
| Yersinia pestis |
Gamma |
AL590842 |
4067 |
5 |
6 |
0 |
1 |
Yes |
| Yersinia pseudotuberculosis |
Gamma |
BX936398 |
4038 |
6 |
6 |
1 |
1 |
Yes |
| Delta-proteobacteria |
Phylum |
GenBank entry |
Proteins |
GGDEF |
EAL |
HD-GYP |
PilZ |
Correlation |
| Bdellovibrio bacteriovorus |
Delta |
BX842601 |
3587 |
5 |
1 |
6 |
15 |
Yes |
| Desulfotalea psychrophila |
Delta |
CR522870 |
3236 |
23 |
4 |
10 |
8 |
Yes |
| Desulfovibrio vulgaris |
Delta |
AE017285 |
3531 |
26 |
10 |
14 |
7 |
Yes |
| Geobacter sulfurreducens |
Delta |
AE017180 |
3446 |
28 |
9 |
10 |
10 |
Yes |
| Epsilon-proteobacteria |
Phylum |
GenBank entry |
Proteins |
GGDEF |
EAL |
HD-GYP |
PilZ |
Correlation |
| Wolinella succinogenes |
Epsilon |
BX571656 |
2044 |
21 |
13* |
2 |
1 |
Yes |
| Helicobacter hepaticus |
Epsilon |
AE017125 |
1875 |
1 |
0 |
0 |
0 |
No |
| Campylobacter jejuni |
Epsilon |
AL111168 |
1634 |
1 |
0 |
0 |
0 |
No |
| Helicobacter pylori |
Epsilon |
AE000511 |
1576 |
0 |
0 |
0 |
0 |
Yes |
| Firmicutes |
Phylum |
GenBank entry |
Proteins |
GGDEF |
EAL |
HD-GYP |
PilZ |
Correlation |
| Bacillus anthracis str. Ames |
Firmi |
AE016879 |
5311 |
9* |
7 |
1 |
0 |
No |
| Bacillus cereus ATCC 14579 |
Firmi |
AE016877 |
5255 |
7* |
5 |
0 |
0 |
No |
| Bacillus halodurans |
Firmi |
BA000004 |
4066 |
4* |
2 |
2 |
2 |
Yes |
| Bacillus licheniformis |
Firmi |
AE017333 |
4196 |
4* |
2 |
0 |
2 |
Yes |
| Bacillus subtilis |
Firmi |
AL009126 |
4105 |
4* |
3 |
0 |
1 |
Yes |
| Bacillus thuringiensis |
Firmi |
AE017355 |
5117 |
9* |
7 |
1 |
0 |
No |
| Clostridium acetobutylicum |
Firmi |
AE001437 |
3848 |
10* |
4 |
9 |
5 |
Yes |
| Clostridium perfringens |
Firmi |
BA000016 |
2723 |
6* |
3 |
1 |
0 |
No |
| Clostridium tetani |
Firmi |
AE015927 |
2373 |
6* |
1 |
1 |
1 |
Yes |
| Enterococcus faecalis |
Firmi |
AE016830 |
3267 |
0* |
0 |
0 |
0 |
Yes |
| Geobacillus kaustophilus |
Firmi |
BA000043 |
3540 |
8* |
5 |
3 |
2 |
Yes |
| Lactobacillus johnsonii |
Firmi |
AE017198 |
1821 |
0* |
0 |
0 |
0 |
Yes |
| Lactobacillus plantarum |
Firmi |
AL935263 |
3059 |
3* |
5 |
0 |
0 |
No |
| Lactococcus lactis |
Firmi |
AE005176 |
2321 |
0* |
0 |
0 |
0 |
Yes |
| Listeria innocua |
Firmi |
AL592022 |
2968 |
3* |
3 |
0 |
0 |
No |
| Listeria monocytogenes |
Firmi |
AL591824 |
2846 |
3* |
3 |
0 |
0 |
No |
| Mesoplasma florum |
Firmi |
AE017263 |
682 |
0 |
0 |
0 |
0 |
Yes |
| Mycoplasma gallisepticum |
Firmi |
AE015450 |
726 |
0 |
0 |
0 |
0 |
Yes |
| Mycoplasma genitalium |
Firmi |
L43967 |
484 |
0 |
0 |
0 |
0 |
Yes |
| Mycoplasma hyopneumoniae |
Firmi |
AE017332 |
691 |
0* |
0 |
0 |
0 |
Yes |
| Mycoplasma mobile |
Firmi |
AE017308 |
633 |
0* |
0 |
0 |
0 |
Yes |
| Mycoplasma mycoides |
Firmi |
BX293980 |
1016 |
0 |
0 |
0 |
0 |
Yes |
| Mycoplasma penetrans |
Firmi |
BA000026 |
1037 |
0 |
0 |
0 |
0 |
Yes |
| Mycoplasma pneumoniae |
Firmi |
U00089 |
677 |
0 |
0 |
0 |
0 |
Yes |
| Mycoplasma pulmonis |
Firmi |
AL445566 |
782 |
0* |
0 |
0 |
0 |
Yes |
| Oceanobacillus iheyensis |
Firmi |
BA000028 |
3500 |
3* |
2 |
2 |
1 |
Yes |
| Onion yellows phytoplasma |
Firmi |
AP006628 |
754 |
0* |
0 |
0 |
0 |
Yes |
| Staphylococcus aureus N315 |
Firmi |
BA000018 |
2624 |
1* |
0 |
0 |
0 |
No |
| Staphylococcus epidermidis |
Firmi |
AE015929 |
2419 |
1* |
0 |
0 |
0 |
No |
| Streptococcus agalactiae |
Firmi |
AE009948 |
2124 |
0* |
0 |
0 |
0 |
Yes |
| Streptococcus mutans |
Firmi |
AE014133 |
1960 |
0* |
0 |
0 |
0 |
Yes |
| Streptococcus pneumoniae |
Firmi |
AE005672 |
2094 |
0* |
0 |
0 |
0 |
Yes |
| Streptococcus pyogenes M1 GAS |
Firmi |
AE004092 |
1697 |
0* |
0 |
0 |
0 |
Yes |
| Streptococcus thermophilus |
Firmi |
CP000024 |
1915 |
0* |
0 |
0 |
0 |
Yes |
| Thermoanaerobacter tengcongensis |
Firmi |
AE008691 |
2588 |
6* |
1 |
6 |
1 |
Yes |
| Ureaplasma parvum |
Firmi |
AF222894 |
614 |
0 |
0 |
0 |
0 |
Yes |
| Other bacterial phyla |
Phylum |
GenBank entry |
Proteins |
GGDEF |
EAL |
HD-GYP |
PilZ |
Correlation |
| Rhodopirellula baltica |
Other |
BX119912 |
7325 |
9* |
3 |
6 |
1 |
Yes |
| Bacteroides thetaiotaomicron |
Other |
AE015928 |
4778 |
0 |
0 |
0 |
0 |
Yes |
| Bacteroides fragilis |
Other |
AP006841 |
4625 |
0 |
0 |
0 |
0 |
Yes |
| Deinococcus radiodurans |
Other |
AE000513 |
3184 |
16 |
5 |
4 |
0 |
No |
| Chlorobium tepidum |
Other |
AE006470 |
2252 |
1 |
0 |
0 |
0 |
No |
| Thermus thermophilus |
Other |
AE017221 |
2210 |
6* |
2 |
5 |
0 |
No |
| Fusobacterium nucleatum |
Other |
AE009951 |
2066 |
0 |
0 |
0 |
0 |
Yes |
| Parachlamydia sp. UWE25 |
Other |
BX908798 |
2031 |
0 |
0 |
0 |
0 |
Yes |
| Porphyromonas gingivalis |
Other |
AE015924 |
1909 |
0 |
0 |
0 |
0 |
Yes |
| Thermotoga maritima |
Other |
AE000512 |
1858 |
9* |
0 |
10 |
1 |
Yes |
| Aquifex aeolicus |
Other |
AE000657 |
1560 |
11* |
6* |
1 |
5 |
Yes |
| Chlamydophila pneumoniae CWL029 |
Other |
AE001363 |
1054 |
0 |
0 |
0 |
0 |
Yes |
| Chlamydophila caviae |
Other |
AE015925 |
1005 |
0 |
0 |
0 |
0 |
Yes |
| Chlamydia muridarum |
Other |
AE002160 |
904 |
0 |
0 |
0 |
0 |
Yes |
| Chlamydia trachomatis |
Other |
AE001273 |
895 |
0 |
0 |
0 |
0 |
Yes |
| Spirochaetes |
Phylum |
GenBank entry |
Proteins |
GGDEF |
EAL |
HD-GYP |
PilZ |
Correlation |
| Borrelia burgdorferi |
Spiro |
AE001115 |
1639 |
1 |
1 |
1 |
1 |
Yes |
| Borrelia garinii |
Spiro |
CP000013 |
932 |
1 |
1 |
1 |
1 |
Yes |
| Leptospira interrogans |
Spiro |
AE010300 |
4727 |
16 |
8 |
2 |
2 |
Yes |
| Treponema denticola |
Spiro |
AE017226 |
2767 |
9 |
2 |
4 |
2 |
Yes |
| Treponema pallidum |
Spiro |
AE000520 |
1036 |
1* |
0 |
3 |
1 |
Yes |
| Archaea |
Phylum |
GenBank entry |
Proteins |
GGDEF |
EAL |
HD-GYP |
PilZ |
Correlation |
| Methanosarcina acetivorans |
Archaea |
AE010299 |
4540 |
0 |
0 |
0 |
0 |
Yes |
| Haloarcula marismortui |
Archaea |
AY596297 |
4240 |
0 |
0 |
0 |
0 |
Yes |
| Methanosarcina mazei |
Archaea |
AE008384 |
3371 |
0 |
0 |
0 |
0 |
Yes |
| Sulfolobus solfataricus |
Archaea |
AE006641 |
2977 |
0 |
0 |
0 |
0 |
Yes |
| Sulfolobus tokodaii |
Archaea |
BA000023 |
2825 |
0 |
0 |
0 |
0 |
Yes |
| Halobacterium salinarum |
Archaea |
AE004437 |
2622 |
0 |
0 |
0 |
0 |
Yes |
| Pyrobaculum aerophilum |
Archaea |
AE009441 |
2605 |
0 |
0 |
0 |
0 |
Yes |
| Archaeoglobus fulgidus |
Archaea |
AE000782 |
2420 |
0 |
0 |
0 |
0 |
Yes |
| Pyrococcus furiosus |
Archaea |
AE009950 |
2125 |
0 |
0 |
0 |
0 |
Yes |
| Pyrococcus horikoshii |
Archaea |
BA000001 |
1955 |
0 |
0 |
0 |
0 |
Yes |
| Pyrococcus abyssi |
Archaea |
AL096836 |
1896 |
0 |
0 |
0 |
0 |
Yes |
| Methanothermobacter thermautotrophicus |
Archaea |
AE000666 |
1873 |
0 |
0 |
0 |
0 |
Yes |
| Aeropyrum pernix |
Archaea |
BA000002 |
1841 |
0 |
0 |
0 |
0 |
Yes |
| Methanocaldococcus jannaschii |
Archaea |
L77117 |
1786 |
0 |
0 |
0 |
0 |
Yes |
| Methanococcus maripaludis |
Archaea |
BX950229 |
1722 |
0 |
0 |
0 |
0 |
Yes |
| Methanopyrus kandleri |
Archaea |
AE009439 |
1687 |
0* |
0 |
0 |
0 |
Yes |
| Picrophilus torridus |
Archaea |
AE017261 |
1535 |
0 |
0 |
0 |
0 |
Yes |
| Thermoplasma volcanium |
Archaea |
BA000011 |
1499 |
0 |
0 |
0 |
0 |
Yes |
| Thermoplasma acidophilum |
Archaea |
AL139299 |
1481 |
0 |
0 |
0 |
0 |
Yes |
| Nanoarchaeum equitans |
Archaea |
AE017199 |
535 |
0 |
0 |
0 |
0 |
Yes |