Table 1. PATAN domains encoded in bacterial and archaeal genomes

Supplementary Material to the paper by K.S. Makarova, E.V. Koonin, R. Haselkorn and M.Y. Galperin
"Cyanobacterial response regulator PatA contains a conserved N-terminal domain (PATAN)
with an alpha-helical insertion
", published in Bioinformatics, 22:1297-1301 (2006).
Abstract. PubMed. Full text (PDF).

Links to other supplementary files:
PATAN queries for PSI-BLAST searches: PatA_N, PATAN2, PATAN3
PATAN PSSMs for PSI-BLAST searches: PatA_N, PATAN2, PATAN3
Figure 3. Multiple alignment of the alpha-clip domains
Figure 4. Multiple alignment of the HTH domains of PatA-family proteins
Figure 5. Multiple alignment of the FRGAF domains
Figure 6. A phylogenetic tree of the PATAN domains


Actinobacteria
. Nocardia farcinica IFM 10152 .......................  6.29 Mb  1 hit
. Streptomyces avermitilis ...........................  9.12 Mb  1 hit
. Streptomyces coelicolor A3(2) ......................  9.05 Mb  1 hit
Cyanobacteria
. Anabaena (Nostoc) sp. PCC 7120 .....................  7.21 Mb  5 hits
. Anabaena variabilis ATCC 29413 .....................  7.07 Mb  5 hits
. Crocosphaera watsonii WH 8501 ......................  6.24 Mb  6 hits
. Gloeobacter violaceus PCC 7421 .....................  4.66 Mb  0 hits*
. Nostoc punctiforme PCC 73102 .......................  9.02 Mb  6 hits
. Synechococcus elongatus PCC 6301 ...................  2.75 Mb  1 hit
. Synechococcus elongatus PCC 7942 ...................  2.75 Mb  1 hit
. Synechococcus sp. JA-3-3Ab .........................  2.93 Mb  4 hits
. Synechococcus sp. JA-2-3B'a(2-13) ..................  3.05 Mb  3 hits
. Synechocystis sp. PCC 6803 .........................  3.95 Mb  6 hits
. Thermosynechococcus elongatus BP-1 .................  2.59 Mb  4 hits
. Trichodesmium erythraeum IMS101 ....................  7.79 Mb  3 hits
Delta-proteobacteria
. Anaeromyxobacter dehalogenans 2CP-C ................  5.01 Mb 13 hits
. Bdellovibrio bacteriovorus HD100 ...................  3.78 Mb  1 hit
. Desulfotalea psychrophila LSv54 ....................  3.66 Mb  2 hits
. Desulfuromonas acetoxidans DSM 684 .................  3.53 Mb  8 hits
. Geobacter metallireducens GS-15 ....................  4.01 Mb  4 hits
. Geobacter sulfurreducens PCA .......................  3.81 Mb  5 hits
. Myxococcus xanthus DK 1622..........................  9.14 Mb 15 hits
. Pelobacter carbinolicus DSM 2380 ...................  3.66 Mb  4 hits
. Pelobacter propionicus DSM 2379 ....................  4.20 Mb  6 hits
. Syntrophobacter fumaroxidans MPOB ..................  4.85 Mb  4 hits
Deinococcus-Thermus
. Deinococcus geothermalis DSM 11300..................  3.04 Mb  2 hits
. Deinococcus radiodurans R1 .........................  3.28 Mb  4 hits*
. Thermus thermophilus HB8 ...........................  2.12 Mb  5 hits
. Thermus thermophilus HB27 ..........................  2.13 Mb  5 hits
Other bacterial phyla
. Aquifex aeolicus VF5 ...............................  1.59 Mb  2 hits
. Chloroflexus aurantiacus J-10-fl ...................  4.93 Mb  3 hits*
Archaea
. Archaeoglobus fulgidus DSM 4304 ....................  2.18 Mb  1 hit
. Methanothermobacter thermautotrophicus..............  1.75 Mb  2 hits
. Methanococcus maripaludis S2 .......................  1.66 Mb  1 hit
. Methanopyrus kandleri AV19 .........................  1.69 Mb  2 hits
. Methanocaldococcus jannaschii DSM 2661 .............  1.74 Mb  1 hit
. Haloarcula marismortui ATCC 43049 ..................  4.27 Mb  1 hit
. Natronomonas pharaonis DSM 2160 ....................  2.75 Mb  1 hit
. Pyrococcus abyssi GE5 ..............................  1.77 Mb  0 hits*
. Pyrococcus furiosus DSM 3638 .......................  1.91 Mb  0 hits*
. Pyrococcus horikoshii OT3 ..........................  1.74 Mb  0 hits*
. Thermococcus kodakarensis KOD1 .....................  2.09 Mb  0 hits*
*Proteins with highly diverged and/or truncated PATAN domains, not included in the total count, are marked with asterisks

1. Experimentally identified PATAN-containing proteins

  Anabaena (Nostoc) sp. PCC 7120
PatA       gi|730273|sp|P39048| Protein PatA (PAT-1)....................    BLink   CDD   UniProt   Pfam
  Synechocystis sp. PCC 6803
TaxP1      gi|16331991|ref|NP_442719.1| PatA subfamily [Synechocystis...    BLink   CDD   UniProt   Pfam
  Fremyella diplosiphon Fd33 (Calothrix PCC 7601)
3109D10    gi|48374218|gb|AAT41917.1| putative two component regulato...    BLink   CDD   UniProt   Pfam
GroupC-A   gi|48374240|gb|AAT41935.1| putative two component regulato...    BLink   CDD   UniProt   Pfam
  Myxococcus xanthus
CHP        gi|27804829|gb|AAO22872.1| hypothetical protein [Myxococcu...    BLink   CDD   UniProt   Pfam
2. PATAN-containing proteins encoded in complete genomes
Actinobacteria
  Nocardia farcinica IFM 10152
nfa47720   gi|54026746|ref|YP_120988.1| hypothetical protein [Nocardi...    BLink   CDD   UniProt   Pfam
  Streptomyces avermitilis MA-4680
SAV3499    gi|29830042|ref|NP_824676.1| hypothetical protein [Streptom...   BLink   CDD   UniProt   Pfam
  Streptomyces coelicolor A3(2)
SCO0684    gi|21219213|ref|NP_624992.1| hypothetical protein [Streptom...   BLink   CDD   UniProt   Pfam

Cyanobacteria
  Anabaena (Nostoc) sp. PCC 7120
all1072    gi|17228567|ref|NP_485115.1| two-component response regula...    BLink   CDD   UniProt   Pfam
all2165    gi|17229657|ref|NP_486205.1| two-component response regula...    BLink   CDD   UniProt   Pfam
all0521    gi|17228017|ref|NP_484565.1| two-component response regula...    BLink   CDD   UniProt   Pfam
all0930    gi|17228425|ref|NP_484973.1| two-component system, regulat...    BLink   CDD   UniProt   Pfam
all2821    gi|17230313|ref|NP_486861.1| two-component response regula...    BLink   CDD   UniProt   Pfam
  Anabaena variabilis ATCC 29413
Ava_0058   gi|75700008|gb|ABA19684.1| Response regulator receiver dom...    BLink   CDD   UniProt   Pfam
Ava_0509   gi|75700457|gb|ABA20133.1| Response regulator receiver dom...    BLink   CDD   UniProt   Pfam
Ava_1102   gi|75701050|gb|ABA20726.1| Response regulator receiver dom...    BLink   CDD   UniProt   Pfam
Ava_2923   gi|75702858|gb|ABA22534.1| Response regulator receiver dom...    BLink   CDD   UniProt   Pfam
Ava_3775   gi|75703704|gb|ABA23380.1| Response regulator receiver dom...    BLink   CDD   UniProt   Pfam
  Gloeobacter violaceus PCC 7421
gll0222    gi|35210782|dbj|BAC88163.1| two-component response regulat...    BLink   CDD   UniProt   Pfam
  Synechococcus elongatus PCC 6301
syc0685_c  gi|56750694|ref|YP_171395.1| two-component response regula...    BLink   CDD   UniProt   Pfam
  Synechococcus elongatus PCC 7942
Synpcc7942_0855gi|81299664|ref|YP_399872.1| response regulator receiv...    BLink   CDD   UniProt   Pfam
  Synechococcus sp. JA-3-3Ab
CYA_2162   gi|86606802|ref|YP_475565.1| hypothetical protein CYA_2869...    BLink   CDD   UniProt   Pfam
CYA_2868   gi|86607468|ref|YP_476231.1| hypothetical protein CYA_2868...    BLink   CDD   UniProt   Pfam
CYA_2869   gi|86607469|ref|YP_476232.1| hypothetical protein CYA_2869...    BLink   CDD   UniProt   Pfam
CYA_2870   gi|86607470|ref|YP_476233.1| hypothetical protein CYA_2869...    BLink   CDD   UniProt   Pfam
  Synechococcus sp. JA-2-3B'a(2-13)
CYB_1482   gi|86608949|ref|YP_477711.1| hypothetical protein CYB_1482...    BLink   CDD   UniProt   Pfam
CYB_1483   gi|86608950|ref|YP_477712.1| hypothetical protein CYB_1483...    BLink   CDD   UniProt   Pfam
CYB_2748   gi|86610174|ref|YP_478936.1| hypothetical protein CYA_2869...    BLink   CDD   UniProt   Pfam
  Synechocystis sp. PCC 6803
sll0038    gi|16331991|ref|NP_442719.1| PatA subfamily [Synechocystis...    BLink   CDD   UniProt   Pfam
sll1291    gi|16329794|ref|NP_440522.1| PatA subfamily [Synechocystis...    BLink   CDD   UniProt   Pfam
slr1041    gi|16329617|ref|NP_440345.1| PatA subfamily [Synechocystis...    BLink   CDD   UniProt   Pfam
slr1214    gi|16329988|ref|NP_440716.1| PatA subfamily [Synechocystis...    BLink   CDD   UniProt   Pfam
slr1594    gi|16329582|ref|NP_440310.1| PatA subfamily [Synechocystis...    BLink   CDD   UniProt   Pfam
slr1693    gi|16330980|ref|NP_441708.1| PatA subfamily [Synechocystis...    BLink   CDD   UniProt   Pfam
  Thermosynechococcus elongatus BP-1
tlr0345    gi|22294066|dbj|BAC07897.1| two-component response regulat...    BLink   CDD   UniProt   Pfam
tll0572    gi|22294293|dbj|BAC08124.1| two-component response regulat...    BLink   CDD   UniProt   Pfam
tll1025    gi|22294749|dbj|BAC08578.1| two-component response regulat...    BLink   CDD   UniProt   Pfam
tlr1992    gi|22295718|dbj|BAC09544.1| tlr1992 [Thermosynechococcus e...    BLink   CDD   UniProt   Pfam


Delta-proteobacteria
  Anaeromyxobacter dehalogenans 2CP-C
Adeh_0260  gi|86156688|ref|YP_463473.1| DnaJ like heat shock protein ...    BLink   CDD   UniProt   Pfam
Adeh_0572  gi|86157000|ref|YP_463785.1| Response regulator receiver  ...    BLink   CDD   UniProt   Pfam
Adeh_0726  gi|86157153|ref|YP_463938.1| hypothetical protein Adeh_364...    BLink   CDD   UniProt   Pfam
Adeh_1091  gi|86157518|ref|YP_464303.1| Heat shock protein DnaJ-like ...    BLink   CDD   UniProt   Pfam
Adeh_1152  gi|86157578|ref|YP_464363.1| hypothetical protein Adeh_115...    BLink   CDD   UniProt   Pfam
Adeh_1986  gi|86158409|ref|YP_465194.1| response regulator receiver d...    BLink   CDD   UniProt   Pfam
Adeh_2722  gi|86159144|ref|YP_465929.1| hypothetical protein Adeh_272...    BLink   CDD   UniProt   Pfam
Adeh_3642  gi|86160060|ref|YP_466845.1| hypothetical protein Adeh_364...    BLink   CDD   UniProt   Pfam
Adeh_3688  gi|86160106|ref|YP_466891.1| TPR repeat:Response regulator...    BLink   CDD   UniProt   Pfam
Adeh_3689  gi|86160107|ref|YP_466892.1| Heat shock protein DnaJ, N-  ...    BLink   CDD   UniProt   Pfam
Adeh_3946  gi|86160362|ref|YP_467147.1| hypothetical protein AdehDR  ...    BLink   CDD   UniProt   Pfam
Adeh_4041  gi|86160457|ref|YP_467242.1| hypothetical protein AdehDR  ...    BLink   CDD   UniProt   Pfam
Adeh_4262  gi|86160678|ref|YP_467463.1| Response regulator receiver.  ..    BLink   CDD   UniProt   Pfam
  Desulfotalea psychrophila LSv54
DP0804     gi|50875693|emb|CAG35533.1| unknown protein [Desulfotalea ...    BLink   CDD   UniProt   Pfam
DP2497     gi|50877386|emb|CAG37226.1| related to cAMP-dependent prot...    BLink   CDD   UniProt   Pfam
  Geobacter metallireducens GS-15
Gmet_0261  gi|78192739|gb|ABB30506.1| response regulator receiver dom...    BLink   CDD   UniProt   Pfam
Gmet_0829  gi|78193304|gb|ABB31071.1| conserved hypothetical protein ...    BLink   CDD   UniProt   Pfam
Gmet_1366  gi|78193833|gb|ABB31600.1| conserved hypothetical protein ...    BLink   CDD   UniProt   Pfam
Gmet_2313  gi|78194771|gb|ABB32538.1| hypothetical protein Gmet_2313 ...    BLink   CDD   UniProt   Pfam
  Geobacter sulfurreducens PCA
GSU0231    gi|39982103|gb|AAR33565.1| hypothetical protein GSU0231 [G...    BLink   CDD   UniProt   Pfam
GSU0316    gi|39982188|gb|AAR33649.1| hypothetical protein GSU0316 [G...    BLink   CDD   UniProt   Pfam
GSU1472    gi|39983453|gb|AAR34846.1| hypothetical protein GSU1472 [G...    BLink   CDD   UniProt   Pfam
GSU2224    gi|39984213|gb|AAR35600.1| response regulator [Geobacter s...    BLink   CDD   UniProt   Pfam
GSU2641    gi|39984627|gb|AAR36013.1| hypothetical protein GSU2641 [G...    BLink   CDD   UniProt   Pfam

  Myxococcus xanthus DK 1622
MXAN_2001  gi|108761898|ref|YP_630236.1| FHA domain protein [Myxococc...    BLink   CDD   UniProt   Pfam
MXAN_2050  gi|108763462|ref|YP_630279.1| response regulator [Myxococc...    BLink   CDD   UniProt   Pfam
MXAN_2693  gi|108759222|ref|YP_630910.1| hypothetical protein MXAN_26...    BLink   CDD   UniProt   Pfam
MXAN_2807  gi|108758125|ref|YP_631024.1| GSPII_E domain/HD domain/res...    BLink   CDD   UniProt   Pfam
MXAN_3211  gi|108762158|ref|YP_631412.1| conserved hypothetical prote...    BLink   CDD   UniProt   Pfam
MXAN_3843  gi|108758275|ref|YP_632025.1| hypothetical protein MXAN_38...    BLink   CDD   UniProt   Pfam
MXAN_4438  gi|108757677|ref|YP_632609.1| response regulator [Myxococc...    BLink   CDD   UniProt   Pfam
MXAN_4717  gi|108757256|ref|YP_632879.1| response regulator/DnaJ doma...    BLink   CDD   UniProt   Pfam
MXAN_4739  gi|108763458|ref|YP_632901.1| hypothetical protein MXAN_47...    BLink   CDD   UniProt   Pfam
MXAN_4863  gi|108757417|ref|YP_633022.1| adventurous gliding motility...    BLink   CDD   UniProt   Pfam
MXAN_4965  gi|108761162|ref|YP_633121.1| hypothetical protein MXAN_49...    BLink   CDD   UniProt   Pfam
MXAN_4975  gi|108762683|ref|YP_633131.1| response regulator [Myxococc...    BLink   CDD   UniProt   Pfam
MXAN_5052  gi|108763322|ref|YP_633207.1| response regulator [Myxococc...    BLink   CDD   UniProt   Pfam
MXAN_5196  gi|108763931|ref|YP_633349.1| hypothetical protein MXAN_51...    BLink   CDD   UniProt   Pfam
MXAN_6627  gi|108761028|ref|YP_634745.1| response regulator [Myxococc...    BLink   CDD   UniProt   Pfam

  Pelobacter carbinolicus DSM 2380
Pcar_0683  gi|77544380|gb|ABA87942.1| hypothetical protein Pcar_0683 ...    BLink   CDD   UniProt   Pfam
Pcar_1407  gi|77545091|gb|ABA88653.1| response regulator receiver dom...    BLink   CDD   UniProt   Pfam
Pcar_2037  gi|77545716|gb|ABA89278.1| conserved hypothetical protein ...    BLink   CDD   UniProt   Pfam
Pcar_2475  gi|77546152|gb|ABA89714.1| hypothetical protein Pcar_2475 ...    BLink   CDD   UniProt   Pfam

Deinococcus-Thermus
  Deinococcus geothermalis DSM 11300
Dgeo_1146  gi|94985248|ref|YP_604612.1| hypothetical protein Dgeo_114...    BLink   CDD   UniProt   Pfam
Dgeo_1950  gi|94986049|ref|YP_605413.1| hypothetical protein Dgeo_195...    BLink   CDD   UniProt   Pfam
  Deinococcus radiodurans R1
DR0150     gi|15805187|ref|NP_293874.1| hypothetical protein DR_0150 ...    BLink   CDD   UniProt   Pfam
DR1230     gi|15806249|ref|NP_294954.1| hypothetical protein DR_1230 ...    BLink   CDD   UniProt   Pfam
DR1859     gi|15806859|ref|NP_295582.1| hypothetical protein DR_1859 ...    BLink   CDD   UniProt   Pfam
DRA0356    gi|15808014|ref|NP_285679.1| hypothetical protein DR_A0356...    BLink   CDD   UniProt   Pfam
*DR2182    gi|15807176|ref|NP_295905.1| hypothetical protein DR2182  ...    BLink   CDD   UniProt   Pfam
  Thermus thermophilus HB8
TTHA0405   gi|55771787|dbj|BAD70228.1| hypothetical protein [Thermus ...    BLink   CDD   UniProt   Pfam
TTHA0994   gi|55772376|dbj|BAD70817.1| hypothetical protein [Thermus ...    BLink   CDD   UniProt   Pfam
TTHA1178   gi|55772560|dbj|BAD71001.1| hypothetical protein [Thermus ...    BLink   CDD   UniProt   Pfam
TTHA1395   gi|55772777|dbj|BAD71218.1| conserved hypothetical protein...    BLink   CDD   UniProt   Pfam
TTHA1704   gi|55773086|dbj|BAD71527.1| conserved hypothetical protein...    BLink   CDD   UniProt   Pfam
  Thermus thermophilus HB27
TTC0037    gi|46198345|ref|YP_004012.1| hypothetical protein TTC0037 ...    BLink   CDD   UniProt   Pfam
TTC0632    gi|46198940|ref|YP_004607.1| hypothetical protein TTC0632 ...    BLink   CDD   UniProt   Pfam
TTC0814    gi|46199120|ref|YP_004787.1| hypothetical protein TTC0814 ...    BLink   CDD   UniProt   Pfam
TTC1029    gi|46199331|ref|YP_004998.1| hypothetical protein TTC1029 ...    BLink   CDD   UniProt   Pfam
TTC1340    gi|46199642|ref|YP_005309.1| hypothetical protein TTC1340 ...    BLink   CDD   UniProt   Pfam

Other bacteria
  Aquifex aeolicus VF5
aq_1562    gi|15606695|ref|NP_214075.1| hypothetical protein aq_1562 ...    BLink   CDD   UniProt   Pfam
aq_1845    gi|15606886|ref|NP_214267.1| hypothetical protein aq_1845 ...    BLink   CDD   UniProt   Pfam

Archaea
  Archaeoglobus fulgidus DSM 4304
AF1501     gi|11499096|ref|NP_070330.1| hypothetical protein AF1501  ...    BLink   CDD   UniProt   Pfam
  Haloarcula marismortui ATCC 43049
rrnAC1940  gi|55378665|ref|YP_136515.1| hypothetical protein rrnAC194...    BLink   CDD   UniProt   Pfam
  Methanocaldococcus jannaschii DSM 2661
MJ0164     gi|15668336|ref|NP_247132.1| hypothetical protein MJ0164  ...    BLink   CDD   UniProt   Pfam
  Methanothermobacter thermautotrophicus str. Delta H
MTH1733    gi|15679725|ref|NP_276843.1| unknown [Methanothermobacter ...    BLink   CDD   UniProt   Pfam
MTH1839    gi|15679827|ref|NP_276945.1| unknown [Methanothermobacter ...    BLink   CDD   UniProt   Pfam
  Methanococcus maripaludis S2
MMP0991    gi|44921312|emb|CAF30547.1| conserved hypothetical protein...    BLink   CDD   UniProt   Pfam
  Methanopyrus kandleri AV19
MK0994     gi|19887514|gb|AAM02207.1| Uncharacterized protein conserv...    BLink   CDD   UniProt   Pfam
MK0624     gi|19887045|gb|AAM01839.1| Uncharacterized protein conserv...    BLink   CDD   UniProt   Pfam
  Natronomonas pharaonis DSM 2160
NP5242A    gi|76559114|emb|CAI50712.1| hypothetical protein [Natronom...    BLink   CDD   UniProt   Pfam
  Pyrococcus abyssi GE5
*PAB2186   gi|5457685|emb|CAB49176.1| Hypothetical protein [Pyrococcu...    BLink   CDD   UniProt   Pfam
  Pyrococcus furiosus DSM 3638
*PF1943    gi|18894143|gb|AAL82067.1| hypothetical protein [Pyrococcu...    BLink   CDD   UniProt   Pfam
  Pyrococcus horikoshii OT3
*PH0277    gi|3256666|dbj|BAA29349.1| 560aa long hypothetical protein...    BLink   CDD   UniProt   Pfam
  Thermococcus kodakarensis KOD1
*TK1268    gi|57159527|dbj|BAD85457.1| hypothetical protein, conserve...    BLink   CDD   UniProt   Pfam
3. PATAN-containing proteins encoded in unfinished genomes
Cyanobacteria
  Crocosphaera watsonii WH 8501
CwatDRAFT_0426 gi|67925899|ref|ZP_00519184.1| hypothetical protein CwatDR...    BLink   CDD   UniProt   Pfam
CwatDRAFT_2058 gi|67923937|ref|ZP_00517392.1| hypothetical protein CwatDR...    BLink   CDD   UniProt   Pfam
CwatDRAFT_2354 gi|67924249|ref|ZP_00517687.1| Response regulator receiver...    BLink   CDD   UniProt   Pfam
CwatDRAFT_3814 gi|67922885|ref|ZP_00516382.1| GGDEF:Response regulator re...    BLink   CDD   UniProt   Pfam
CwatDRAFT_4403 gi|67922153|ref|ZP_00515668.1| hypothetical protein CwatDR...    BLink   CDD   UniProt   Pfam
CwatDRAFT_5397 gi|67920931|ref|ZP_00514450.1| two-component response regu...    BLink   CDD   UniProt   Pfam
  Nostoc punctiforme PCC 73102
Npun02001893   gi|53688549|ref|ZP_00110880.2| COG0784: FOG: CheY-like rec...    BLink   CDD   UniProt   Pfam
Npun02001372   gi|23129472|ref|ZP_00111299.1| COG0784: FOG: CheY-like rec...    BLink   CDD   UniProt   Pfam
Npun02002135   gi|23128525|ref|ZP_00110370.1| COG0784: FOG: CheY-like rec...    BLink   CDD   UniProt   Pfam
Npun02003421   gi|23127465|ref|ZP_00109334.1| COG0784: FOG: CheY-like rec...    BLink   CDD   UniProt   Pfam
Npun02004453   gi|53687831|ref|ZP_00108884.2| COG0784: FOG: CheY-like rec...    BLink   CDD   UniProt   Pfam
Npun02007486   gi|23124628|ref|ZP_00106605.1| COG0784: FOG: CheY-like rec...    BLink   CDD   UniProt   Pfam
  Trichodesmium erythraeum IMS101
TeryDRAFT_1567 gi|71676483|ref|ZP_00674224.1| Response regulator receiver...    BLink   CDD   UniProt   Pfam
TeryDRAFT_1670 gi|71676591|ref|ZP_00674332.1| Response regulator receiver...    BLink   CDD   UniProt   Pfam
TeryDRAFT_2495 gi|71675622|ref|ZP_00673366.1| Response regulator receiver...    BLink   CDD   UniProt   Pfam

Delta-proteobacteria
  Desulfuromonas acetoxidans DSM 684
Dace_0078      gi|95931292|ref|ZP_01314009.1| IMP dehydrogenase/GMP reduc...    BLink   CDD   UniProt   Pfam
Dace_0749      gi|95930654|ref|ZP_01313388.1| conserved hypothetical prot...    BLink   CDD   UniProt   Pfam
Dace_0857      gi|95930703|ref|ZP_01313436.1| IMP dehydrogenase/GMP reduc...    BLink   CDD   UniProt   Pfam
Dace_0934      gi|95930780|ref|ZP_01313512.1| IMP dehydrogenase/GMP reduc...    BLink   CDD   UniProt   Pfam
Dace_0983      gi|95930195|ref|ZP_01312933.1| Response regulator receiver...    BLink   CDD   UniProt   Pfam
Dace_1331      gi|95930115|ref|ZP_01312854.1| IMP dehydrogenase/GMP reduc...    BLink   CDD   UniProt   Pfam
Dace_1366      gi|95930150|ref|ZP_01312889.1| conserved hypothetical prot...    BLink   CDD   UniProt   Pfam
Dace_3199      gi|95928411|ref|ZP_01311159.1| HDIG [Desulfuromonas acetox...    BLink   CDD   UniProt   Pfam
  Pelobacter propionicus DSM 2379
PproDRAFT_0903 gi|71839043|ref|ZP_00678797.1| conserved hypothetical prot...    BLink   CDD   UniProt   Pfam
PproDRAFT_1371 gi|71838292|ref|ZP_00678052.1| conserved hypothetical prot...    BLink   CDD   UniProt   Pfam
PproDRAFT_1493 gi|71838415|ref|ZP_00678174.1| Uncharacterized HDIG domain...    BLink   CDD   UniProt   Pfam
PproDRAFT_3122 gi|71837210|ref|ZP_00676976.1| Response regulator receiver...    BLink   CDD   UniProt   Pfam
PproDRAFT_3419 gi|71836729|ref|ZP_00676497.1| conserved hypothetical prot...    BLink   CDD   UniProt   Pfam
  Syntrophobacter fumaroxidans MPOB
SfumDRAFT_0806 gi|71546432|ref|ZP_00667233.1| hypothetical protein SfumDR...    BLink   CDD   UniProt   Pfam
SfumDRAFT_1350 gi|71545800|ref|ZP_00666704.1| Pentapeptide repeat [Syntro...    BLink   CDD   UniProt   Pfam
SfumDRAFT_3724 gi|71547819|ref|ZP_00668370.1| Protein-glutamate methylest...    BLink   CDD   UniProt   Pfam

Other bacteria
  Chloroflexus aurantiacus J-10-fl
CaurDRAFT_0216 gi|76259218|ref|ZP_00766869.1| hypothetical protein CaurDR...    BLink   CDD   UniProt   Pfam
CaurDRAFT_0441 gi|76258822|ref|ZP_00766475.1| hypothetical protein CaurDR...    BLink   CDD   UniProt   Pfam
CaurDRAFT_3570 gi|76259467|ref|ZP_00767115.1| hypothetical protein CaurDR...    BLink   CDD   UniProt   Pfam
*CaurDRAFT_3745gi|76259643|ref|ZP_00767290.1| hypothetical protein CaurDR...    BLink   CDD   UniProt   Pfam

Updated July 21, 2006. Please send corrections, questions and comments to Michael Galperin