c-di-GMP phosphodiesterase class II (HD-GYP) domains in Firmicutes
Firmicutes
. Bacillus anthracis str. Ames ........................... 1 hit
. Bacillus clausii KSM-K16 ............................... 1 hit
. Bacillus halodurans C-125 .............................. 2 hits
. Bacillus thuringiensis serovar konkukian str. 97-27 .... 1 hit
. Carboxydothermus hydrogenoformans Z-2901 ............... 13 hits
. Clostridium acetobutylicum ATCC 824 .................... 9 hits
. Clostridium novyi NT ................................... 4 hits
. Clostridium perfringens str. 13 ........................ 1 hit
. Clostridium tetani E88 ................................. 1 hit
. Desulfitobacterium hafniense Y51 ....................... 15 hits
. Geobacillus kaustophilus HTA426 ........................ 3 hits
. Moorella thermoacetica ATCC 39073 ...................... 10 hits
. Oceanobacillus iheyensis HTE831 ........................ 2 hits
. Symbiobacterium thermophilum IAM 14863 ................. 4 hits
. Syntrophomonas wolfei subsp. wolfei str. Goettingen .... 18 hits
. Thermoanaerobacter tengcongensis MB4 ................... 6 hits
Firmicutes
Bacillus anthracis str. Ames
BA0975 gi|30261100|ref|NP_843477.1| HD domain protein [Bacillus a... BLink CDD UniProt Pfam
Bacillus clausii KSM-K16
ABC2435 gi|56964200|ref|YP_175931.1| hypothetical protein ABC2435 ... BLink CDD UniProt Pfam
Bacillus halodurans C-125
BH0008 gi|15612571|ref|NP_240874.1| hypothetical protein BH0008 ... BLink CDD UniProt Pfam
BH3794 gi|15616356|ref|NP_244661.1| hypothetical protein BH3794 ... BLink CDD UniProt Pfam
Bacillus thuringiensis serovar konkukian str. 97-27
BT9727_0897 gi|49477040|ref|YP_035237.1| HD domain protein [Bacillus ... BLink CDD UniProt Pfam
Carboxydothermus hydrogenoformans Z-2901
CHY_1969 gi|78043667|ref|YP_360788.1| HDIG domain protein [Carboxyd... BLink CDD UniProt Pfam
CHY_0160 gi|78043869|ref|YP_359032.1| HDIG domain protein [Carboxyd... BLink CDD UniProt Pfam
CHY_1875 gi|78044830|ref|YP_360695.1| sensory box protein [Carboxyd... BLink CDD UniProt Pfam
CHY_2028 gi|78042857|ref|YP_360847.1| GGDEF/GAF/HDIG domain protein... BLink CDD UniProt Pfam
CHY_0103 gi|78042964|ref|YP_358975.1| HD domain protein [Carboxydot... BLink CDD UniProt Pfam
CHY_0905 gi|78044291|ref|YP_359754.1| HDIG domain protein [Carboxyd... BLink CDD UniProt Pfam
CHY_2195 gi|78043243|ref|YP_361008.1| sensory box protein [Carboxyd... BLink CDD UniProt Pfam
CHY_0883 gi|78043261|ref|YP_359733.1| HD domain protein [Carboxydot... BLink CDD UniProt Pfam
CHY_0962 gi|78045015|ref|YP_359809.1| HDIG domain protein [Carboxyd... BLink CDD UniProt Pfam
CHY_2441 gi|78044129|ref|YP_361235.1| HDIG domain protein [Carboxyd... BLink CDD UniProt Pfam
CHY_0881 gi|78044800|ref|YP_359731.1| HD domain protein [Carboxydot... BLink CDD UniProt Pfam
CHY_0135 gi|78043440|ref|YP_359007.1| HDIG domain protein [Carboxyd... BLink CDD UniProt Pfam
CHY_1905 gi|78045121|ref|YP_360724.1| HD domain protein [Carboxydot... BLink CDD UniProt Pfam
Clostridium acetobutylicum ATCC 824
CAC0277 gi|15893569|ref|NP_346918.1| HD-GYP hydrolase domain conta... BLink CDD UniProt Pfam
CAC0475 gi|15893766|ref|NP_347115.1| HD-GYP domain [Clostridium ac... BLink CDD UniProt Pfam
CAC0853 gi|15894140|ref|NP_347489.1| HD superfamily hydrolase (HD-... BLink CDD UniProt Pfam
CAC2534 gi|15895797|ref|NP_349146.1| HD_GYP hydrolase domain fused... BLink CDD UniProt Pfam
CAC2620 gi|15895878|ref|NP_349227.1| HD-GYP hydrolase domain conta... BLink CDD UniProt Pfam
CAC2837 gi|15896092|ref|NP_349441.1| Fusion HD-GYP domain and HD-h... BLink CDD UniProt Pfam
CAC3251 gi|15896496|ref|NP_349845.1| Sensory transduction protein ... BLink CDD UniProt Pfam
CAC3410 gi|15896651|ref|NP_350000.1| HD-GYP domain (HD superfamily... BLink CDD UniProt Pfam
CAC3650 gi|15896883|ref|NP_350232.1| HD-GYP domain containing prot... BLink CDD UniProt Pfam
Clostridium novyi NT
NT01CX_1565 gi|118443347|ref|YP_877646.1| hypothetical protein NT01CX_... BLink CDD UniProt Pfam
NT01CX_0126 gi|118444795|ref|YP_878635.1| HD domain containing protein... BLink CDD UniProt Pfam
NT01CX_0501 gi|118444989|ref|YP_878971.1| fusion HD-GYP domain and HD-... BLink CDD UniProt Pfam
NT01CX_0999 gi|118443707|ref|YP_877096.1| HD-GYP hydrolase domain cont... BLink CDD UniProt Pfam
Clostridium perfringens str. 13
CPE1560 gi|18310542|ref|NP_562476.1| hypothetical protein CPE1560 ... BLink CDD UniProt Pfam
Clostridium tetani E88
CTC00529 gi|28210269|ref|NP_781213.1| hypothetical protein CTC00529... BLink CDD UniProt Pfam
Desulfitobacterium hafniense Y51
DSY0230 gi|89892976|ref|YP_516463.1| hypothetical protein DSY0230 ... BLink CDD UniProt Pfam
DSY0302 gi|89893048|ref|YP_516535.1| hypothetical protein DSY0302 ... BLink CDD UniProt Pfam
DSY0508 gi|89893254|ref|YP_516741.1| hypothetical protein DSY0508 ... BLink CDD UniProt Pfam
DSY1027 gi|89893773|ref|YP_517260.1| hypothetical protein DSY1027 ... BLink CDD UniProt Pfam
DSY1176 gi|89893922|ref|YP_517409.1| hypothetical protein DSY1176 ... BLink CDD UniProt Pfam
DSY1899 gi|89894645|ref|YP_518132.1| hypothetical protein DSY1899 ... BLink CDD UniProt Pfam
DSY2161 gi|89894907|ref|YP_518394.1| hypothetical protein DSY2161 ... BLink CDD UniProt Pfam
DSY2928 gi|89895674|ref|YP_519161.1| hypothetical protein DSY2928 ... BLink CDD UniProt Pfam
DSY2946 gi|89895692|ref|YP_519179.1| hypothetical protein DSY2946 ... BLink CDD UniProt Pfam
DSY2996 gi|89895742|ref|YP_519229.1| hypothetical protein DSY2996 ... BLink CDD UniProt Pfam
DSY3225 gi|89895971|ref|YP_519458.1| hypothetical protein DSY3225 ... BLink CDD UniProt Pfam
DSY3238 gi|89895984|ref|YP_519471.1| hypothetical protein DSY3238 ... BLink CDD UniProt Pfam
DSY3403 gi|89896149|ref|YP_519636.1| HD-GYP domain protein [Desulf... BLink CDD UniProt Pfam
DSY3740 gi|89896486|ref|YP_519973.1| hypothetical protein DSY3740 ... BLink CDD UniProt Pfam
DSY4293 gi|89897039|ref|YP_520526.1| hypothetical protein DSY4293 ... BLink CDD UniProt Pfam
Geobacillus kaustophilus HTA426
GK0007 gi|56418542|ref|YP_145860.1| hypothetical protein GK0007 ... BLink CDD UniProt Pfam
GK1841 gi|56420376|ref|YP_147694.1| hypothetical protein GK1841 ... BLink CDD UniProt Pfam
GK3110 gi|56421645|ref|YP_148963.1| hypothetical protein GK3110 ... BLink CDD UniProt Pfam
Moorella thermoacetica ATCC 39073
Moth_0504 gi|83589368|ref|YP_429377.1| metal dependent phosphohydrol... BLink CDD UniProt Pfam
Moth_0689 gi|83589543|ref|YP_429552.1| putative PAS/PAC sensor prote... BLink CDD UniProt Pfam
Moth_1432 gi|83590278|ref|YP_430287.1| metal dependent phosphohydrol... BLink CDD UniProt Pfam
Moth_1469 gi|83590313|ref|YP_430322.1| metal dependent phosphohydrol... BLink CDD UniProt Pfam
Moth_1470 gi|83590314|ref|YP_430323.1| metal dependent phosphohydrol... BLink CDD UniProt Pfam
Moth_2131 gi|83590957|ref|YP_430966.1| metal dependent phosphohydrol... BLink CDD UniProt Pfam
Moth_2150 gi|83590973|ref|YP_430982.1| metal dependent phosphohydrol... BLink CDD UniProt Pfam
Moth_2263 gi|83591084|ref|YP_431093.1| metal dependent phosphohydrol... BLink CDD UniProt Pfam
Moth_2492 gi|83591308|ref|YP_431317.1| metal dependent phosphohydrol... BLink CDD UniProt Pfam
Moth_2495 gi|83591311|ref|YP_431320.1| metal dependent phosphohydrol... BLink CDD UniProt Pfam
Oceanobacillus iheyensis HTE831
OB0008 gi|23097463|ref|NP_690929.1| hypothetical protein OB0008 ... BLink CDD UniProt Pfam
OB2371 gi|23099826|ref|NP_693292.1| hypothetical protein OB2371 ... BLink CDD UniProt Pfam
Symbiobacterium thermophilum IAM 14863
STH2144 gi|51893282|ref|YP_075973.1| hypothetical protein STH2144 ... BLink CDD UniProt Pfam
STH2145 gi|51893283|ref|YP_075974.1| hypothetical protein STH2145 ... BLink CDD UniProt Pfam
STH2352 gi|51893490|ref|YP_076181.1| hypothetical protein STH2352 ... BLink CDD UniProt Pfam
STH2690 gi|51893828|ref|YP_076519.1| two-component response regula... BLink CDD UniProt Pfam
Syntrophomonas wolfei subsp. wolfei str. Goettingen
Swol_0011 gi|114565587|ref|YP_752741.1| putative PAS/PAC sensor prot... BLink CDD UniProt Pfam
Swol_0337 gi|114565895|ref|YP_753049.1| metal dependent phosphohydro... BLink CDD UniProt Pfam
Swol_0348 gi|114565906|ref|YP_753060.1| sensory box protein [Syntrop... BLink CDD UniProt Pfam
Swol_0647 gi|114566191|ref|YP_753345.1| HD-GYP domain containing pro... BLink CDD UniProt Pfam
Swol_1041 gi|114566571|ref|YP_753725.1| response regulator receiver ... BLink CDD UniProt Pfam
Swol_1320 gi|114566845|ref|YP_753999.1| HD-GYP domain-like protein [... BLink CDD UniProt Pfam
Swol_1321 gi|114566846|ref|YP_754000.1| HD-GYP domain-like protein [... BLink CDD UniProt Pfam
Swol_1469 gi|114566991|ref|YP_754145.1| HD-GYP domain-like protein [... BLink CDD UniProt Pfam
Swol_1502 gi|114567022|ref|YP_754176.1| metal dependent phosphohydro... BLink CDD UniProt Pfam
Swol_1504 gi|114567024|ref|YP_754178.1| metal dependent phosphohydro... BLink CDD UniProt Pfam
Swol_1668 gi|114567183|ref|YP_754337.1| HD-GYP domain-like protein [... BLink CDD UniProt Pfam
Swol_1894 gi|114567409|ref|YP_754563.1| HD-GYP domain [Syntrophomona... BLink CDD UniProt Pfam
Swol_2130 gi|114567638|ref|YP_754792.1| response regulator receiver ... BLink CDD UniProt Pfam
Swol_2150 gi|114567658|ref|YP_754812.1| metal dependent phosphohydro... BLink CDD UniProt Pfam
Swol_2407 gi|114567913|ref|YP_755067.1| HD domain protein [Syntropho... BLink CDD UniProt Pfam
Swol_2424 gi|114567930|ref|YP_755084.1| HD-GYP domain-like protein [... BLink CDD UniProt Pfam
Swol_2483 gi|114567989|ref|YP_755143.1| putative PAS/PAC sensor prot... BLink CDD UniProt Pfam
Swol_2547 gi|114568052|ref|YP_755206.1| response regulator receiver ... BLink CDD UniProt Pfam
Thermoanaerobacter tengcongensis MB4
TTE0038 gi|20806576|ref|NP_621747.1| Response regulators consistin... BLink CDD UniProt Pfam
TTE0042 gi|20806580|ref|NP_621751.1| HD-GYP domain [Thermoanaeroba... BLink CDD UniProt Pfam
TTE0518 gi|20807019|ref|NP_622190.1| HD-GYP domain [Thermoanaeroba... BLink CDD UniProt Pfam
TTE1032 gi|20807511|ref|NP_622682.1| HD-GYP domain [Thermoanaeroba... BLink CDD UniProt Pfam
TTE1721 gi|20808146|ref|NP_623317.1| HD-GYP domain [Thermoanaeroba... BLink CDD UniProt Pfam
TTE2055 gi|20808454|ref|NP_623625.1| HD-GYP domain [Thermoanaeroba... BLink CDD UniProt Pfam
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