Type II c-di-GMP-specific phosphodiesterase (HD-GYP) domains in various Bacteria
Actinobacteria
. Mycobacterium avium subsp. paratuberculosis str. k10 ........ 1 hit
. Streptomyces avermitilis MA-4680 ............................ 1 hit
. Streptomyces coelicolor A3(2) ............................... 1 hit
. Symbiobacterium thermophilum IAM 14863 ...................... 4 hits
Cyanobacteria
. Gloeobacter violaceus PCC 7421 .............................. 1 hit
. Nostoc sp. PCC 7120 ......................................... 2 hits
. Synechococcus elongatus PCC 6301 ............................ 2 hits
. Synechocystis sp. PCC 6803 .................................. 2 hits
. Thermosynechococcus elongatus BP-1 .......................... 1 hit
Alpha-proteobacteria
. Agrobacterium tumefaciens str. C58 .......................... 1 hit
. Bradyrhizobium japonicum USDA 110 ........................... 3 hits
. Mesorhizobium loti MAFF303099 ............................... 1 hit
. Rhodopseudomonas palustris CGA009 ........................... 2 hits
Beta-proteobacteria
. Azoarcus sp. EbN1 ........................................... 5 hits
. Bordetella bronchiseptica RB50 .............................. 2 hits
. Bordetella parapertussis 12822 .............................. 2 hits
. Bordetella pertussis Tohama I ............................... 1 hit
. Burkholderia mallei ATCC 23344 .............................. 2 hits
. Burkholderia pseudomallei K96243 ............................ 2 hits
. Chromobacterium violaceum ATCC 12472 ........................ 11 hits
. Ralstonia solanacearum GMI1000 .............................. 2 hits
Gamma-proteobacteria
. Idiomarina loihiensis L2TR .................................. 1 hit
. Methylococcus capsulatus str. Bath .......................... 1 hit
. Photobacterium profundum SS9 ................................ 2 hits
. Pseudomonas aeruginosa PAO1 ................................. 3 hits
. Pseudomonas putida KT2440 ................................... 2 hits
. Pseudomonas syringae pv. tomato str. DC3000 ................. 1 hit
. Shewanella oneidensis MR-1 .................................. 9 hit
. Vibrio cholerae O1 biovar eltor str. N16961 ................. 9 hits
. Vibrio parahaemolyticus RIMD 2210633 ........................ 5 hits
. Vibrio vulnificus CMCP6 ..................................... 13 hits
. Xanthomonas axonopodis pv. citri str. 306 ................... 3 hits
. Xanthomonas campestris pv. campestris str. ATCC 33913 ....... 3 hits
. Xylella fastidiosa 9a5c ..................................... 1 hit
. Yersinia pseudotuberculosis IP 32953 ........................ 1 hit
Delta-proteobacteria
. Bdellovibrio bacteriovorus HD100 ............................ 6 hits
. Desulfotalea psychrophila LSv54 ............................. 10 hits
. Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough ... 14 hits
. Geobacter sulfurreducens PCA ................................ 10 hits
Epsilon-proteobacteria
. Wolinella succinogenes DSM 1740 ............................. 2 hits
Firmicutes
. Bacillus anthracis str. Ames ................................ 1 hit
. Bacillus halodurans C-125 ................................... 2 hits
. Bacillus thuringiensis serovar konkukian str. 97-27 ......... 1 hit
. Clostridium acetobutylicum ATCC 824 ......................... 9 hits
. Clostridium perfringens str. 13 ............................. 1 hit
. Clostridium tetani E88 ...................................... 1 hit
. Geobacillus kaustophilus HTA426 ............................. 3 hits
. Oceanobacillus iheyensis HTE831 ............................. 2 hits
. Thermoanaerobacter tengcongensis MB4 ........................ 6 hits
Spirochetes
. Borrelia burgdorferi B31 .................................... 1 hits
. Borrelia garinii PBi ........................................ 1 hits
. Leptospira interrogans serovar Lai str. 56601 ............... 2 hits
. Treponema denticola ATCC 35405 .............................. 4 hits
. Treponema pallidum subsp. pallidum str. Nichols ............. 3 hit
Other phyla
. Rhodopirellula baltica SH 1 ................................. 6 hits
. Thermotoga maritima MSB8 .................................... 10 hits
. Thermus thermophilus HB27 ................................... 5 hits
Actinobacteria
Mycobacterium avium subsp. paratuberculosis str. k10
MAP3352c gi|41409450|ref|NP_962286.1| hypothetical protein MAP3352c... BLink CDD UniProt Pfam
Streptomyces avermitilis MA-4680
SAV3036 gi|29829578|ref|NP_824212.1| putative integral membrane pr... BLink CDD UniProt Pfam
Streptomyces coelicolor A3(2)
SCO5218 gi|21223586|ref|NP_629365.1| putative integral membrane pr... BLink CDD UniProt Pfam
Symbiobacterium thermophilum IAM 14863
STH2144 gi|51893282|ref|YP_075973.1| hypothetical protein STH2144 ... BLink CDD UniProt Pfam
STH2145 gi|51893283|ref|YP_075974.1| hypothetical protein STH2145 ... BLink CDD UniProt Pfam
STH2352 gi|51893490|ref|YP_076181.1| hypothetical protein STH2352 ... BLink CDD UniProt Pfam
STH2690 gi|51893828|ref|YP_076519.1| two-component response regula... BLink CDD UniProt Pfam
Cyanobacteria
Gloeobacter violaceus PCC 7421
gll3192 gi|37522761|ref|NP_926138.1| hypothetical protein gll3192 ... BLink CDD UniProt Pfam
Nostoc sp. PCC 7120
alr3920 gi|17231412|ref|NP_487960.1| two-component response regula... BLink CDD UniProt Pfam
all4304 gi|17231796|ref|NP_488344.1| hypothetical protein all4304 ... BLink CDD UniProt Pfam
Synechococcus elongatus PCC 6301
syc0402_c gi|56750411|ref|YP_171112.1| hypothetical protein syc0402_... BLink CDD UniProt Pfam
syc1904_d gi|56751913|ref|YP_172614.1| hypothetical protein syc1904_... BLink CDD UniProt Pfam
Synechocystis sp. PCC 6803
sll1624 gi|16330364|ref|NP_441092.1| regulatory components of sens... BLink CDD UniProt Pfam
slr2100 gi|16330586|ref|NP_441314.1| regulatory components of sens... BLink CDD UniProt Pfam
Thermosynechococcus elongatus BP-1
tlr0485 gi|22298028|ref|NP_681275.1| hypothetical protein tlr0485 ... BLink CDD UniProt Pfam
Alpha-proteobacteria
Agrobacterium tumefaciens str. C58
Atu2291 gi|15889567|ref|NP_355248.1| hypothetical protein AGR_C_41... BLink CDD UniProt Pfam
Bradyrhizobium japonicum USDA 110
blr0842 gi|27375953|ref|NP_767482.1| hypothetical protein blr0842 ... BLink CDD UniProt Pfam
bll2340 gi|27377451|ref|NP_768980.1| two-component response regula... BLink CDD UniProt Pfam
bll4192 gi|27379303|ref|NP_770832.1| hypothetical protein bll4192 ... BLink CDD UniProt Pfam
Mesorhizobium loti MAFF303099
mll1989 gi|13471875|ref|NP_103442.1| hypothetical protein mll1989 ... BLink CDD UniProt Pfam
Rhodopseudomonas palustris CGA009
RPA0145 gi|39933222|ref|NP_945498.1| Metal dependent phosphohydrol... BLink CDD UniProt Pfam
RPA4830 gi|39937888|ref|NP_950164.1| Metal dependent phosphohydrol... BLink CDD UniProt Pfam
Beta-proteobacteria
Azoarcus sp. EbN1
ebA192 gi|56475545|ref|YP_157134.1| hypothetical protein ebA192 ... BLink CDD UniProt Pfam
ebA1682 gi|56476346|ref|YP_157935.1| putative metal-dependent phos... BLink CDD UniProt Pfam
ebA2183 gi|56476643|ref|YP_158232.1| putative response regulator ... BLink CDD UniProt Pfam
ebA3210 gi|56477246|ref|YP_158835.1| putative response regulator r... BLink CDD UniProt Pfam
ebD72 gi|56477238|ref|YP_158827.1| hypothetical protein with res... BLink CDD UniProt Pfam
Bordetella bronchiseptica RB50
BB1564 gi|33600549|ref|NP_888109.1| hypothetical protein BB1564 ... BLink CDD UniProt Pfam
BB1961 gi|33600946|ref|NP_888506.1| hypothetical protein BB1961 ... BLink CDD UniProt Pfam
Bordetella parapertussis 12822
BPP2167 gi|33596780|ref|NP_884423.1| hypothetical protein BPP2167 ... BLink CDD UniProt Pfam
BPP2515 gi|33597103|ref|NP_884746.1| hypothetical protein BPP2515 ... BLink CDD UniProt Pfam
Bordetella pertussis Tohama I
BP3508 gi|33594382|ref|NP_882026.1| hypothetical protein BP3508 ... BLink CDD UniProt Pfam
Burkholderia mallei ATCC 23344
BMA0261 gi|53724711|ref|YP_102090.1| response regulator [Burkholde... BLink CDD UniProt Pfam
BMAA1662 gi|53716379|ref|YP_106232.1| response regulator [Burkholde... BLink CDD UniProt Pfam
Burkholderia pseudomallei K96243
BPSL0704 gi|53718347|ref|YP_107333.1| putative two-component respon... BLink CDD UniProt Pfam
BPSS1648 gi|53722669|ref|YP_111654.1| probable two-component respon... BLink CDD UniProt Pfam
Chromobacterium violaceum ATCC 12472
CV0359 gi|34495814|ref|NP_900029.1| hypothetical protein CV0359 ... BLink CDD UniProt Pfam
CV0368 gi|34495823|ref|NP_900038.1| hypothetical protein CV0368 ... BLink CDD UniProt Pfam
CV0883 gi|34496338|ref|NP_900553.1| probable two component system... BLink CDD UniProt Pfam
CV1189 gi|34496644|ref|NP_900859.1| probable two-component system... BLink CDD UniProt Pfam
CV1515 gi|34496970|ref|NP_901185.1| hypothetical protein CV1515 ... BLink CDD UniProt Pfam
CV1730 gi|34497185|ref|NP_901400.1| hypothetical protein CV1730 ... BLink CDD UniProt Pfam
CV2497 gi|34497952|ref|NP_902167.1| probable two component system... BLink CDD UniProt Pfam
CV3203 gi|34498658|ref|NP_902873.1| hypothetical protein CV3203 ... BLink CDD UniProt Pfam
CV3205 gi|34498660|ref|NP_902875.1| hypothetical protein CV3205 ... BLink CDD UniProt Pfam
CV3246 gi|34498701|ref|NP_902916.1| probable two component system... BLink CDD UniProt Pfam
CV3341 gi|34498796|ref|NP_903011.1| probable sensory transduction... BLink CDD UniProt Pfam
Ralstonia solanacearum GMI1000
RSc0592 gi|17545311|ref|NP_518713.1| hypothetical protein RS04854 ... BLink CDD UniProt Pfam
RSc2515 gi|17547234|ref|NP_520636.1| hypothetical protein RS01067 ... BLink CDD UniProt Pfam
Gamma-proteobacteria
Idiomarina loihiensis L2TR
IL1208 gi|56460316|ref|YP_155597.1| Response regulator containing... BLink CDD UniProt Pfam
Methylococcus capsulatus str. Bath
MCA2070 gi|53803910|ref|YP_114500.1| sensory box protein [Methyloc... BLink CDD UniProt Pfam
Photobacterium profundum SS9
PBPRB0392 gi|54302072|ref|YP_132065.1| hypothetical protein PBPRB039... BLink CDD UniProt Pfam
PBPRA3166 gi|54310254|ref|YP_131274.1| hypothetical HD-GYP hydrolase... BLink CDD UniProt Pfam
Pseudomonas aeruginosa PAO1
PA2572 gi|15597768|ref|NP_251262.1| probable two-component respon... BLink CDD UniProt Pfam
PA4108 gi|15599303|ref|NP_252797.1| hypothetical protein PA4108 ... BLink CDD UniProt Pfam
PA4781 gi|15599975|ref|NP_253469.1| probable two-component respon... BLink CDD UniProt Pfam
Pseudomonas putida KT2440
PP2599 gi|26989318|ref|NP_744743.1| chemotaxis sensory transducer... BLink CDD UniProt Pfam
PP2942 gi|26989661|ref|NP_745086.1| response regulator [Pseudomon... BLink CDD UniProt Pfam
Pseudomonas syringae pv. tomato str. DC3000
PSPTO1152 gi|28868367|ref|NP_790986.1| HDIG domain protein [Pseudomo... BLink CDD UniProt Pfam
Shewanella oneidensis MR-1
SO0860 gi|24372449|ref|NP_716491.1| response regulator [Shewanell... BLink CDD UniProt Pfam
SO1387 gi|24372965|ref|NP_717007.1| HD domain protein [Shewanella... BLink CDD UniProt Pfam
SO1942 gi|24373506|ref|NP_717549.1| HDIG domain protein [Shewanel... BLink CDD UniProt Pfam
SO2366 gi|24373913|ref|NP_717956.1| response regulator [Shewanell... BLink CDD UniProt Pfam
SO2541 gi|24374084|ref|NP_718127.1| response regulator [Shewanell... BLink CDD UniProt Pfam
SO2862 gi|24374391|ref|NP_718434.1| HDIG domain protein [Shewanel... BLink CDD UniProt Pfam
SO3491 gi|24374997|ref|NP_719040.1| HDIG domain protein [Shewanel... BLink CDD UniProt Pfam
SO4003 gi|24375490|ref|NP_719533.1| response regulator [Shewanell... BLink CDD UniProt Pfam
SO4711 gi|24376183|ref|NP_720227.1| HD domain protein [Shewanella... BLink CDD UniProt Pfam
Vibrio cholerae O1 biovar eltor str. N16961
VCA0210 gi|15600979|ref|NP_232609.1| response regulator, putative ... BLink CDD UniProt Pfam
VCA0681 gi|15601438|ref|NP_233069.1| hypothetical protein VCA0681 ... BLink CDD UniProt Pfam
VCA0895 gi|15601649|ref|NP_233280.1| chemotactic transducer-relate... BLink CDD UniProt Pfam
VCA0931 gi|15601685|ref|NP_233316.1| hypothetical protein VCA0931 ... BLink CDD UniProt Pfam
VC1087 gi|15641100|ref|NP_230732.1| response regulator [Vibrio ch... BLink CDD UniProt Pfam
VC1295 gi|15641308|ref|NP_230940.1| hypothetical protein VC1295 ... BLink CDD UniProt Pfam
VC1348 gi|15641360|ref|NP_230992.1| response regulator [Vibrio ch... BLink CDD UniProt Pfam
VC2340 gi|15642337|ref|NP_231970.1| hypothetical protein VC2340 ... BLink CDD UniProt Pfam
VC2497 gi|15642493|ref|NP_232126.1| hypothetical protein VC2497 ... BLink CDD UniProt Pfam
Vibrio parahaemolyticus RIMD 2210633
VP1378 gi|28898152|ref|NP_797757.1| putative HD-GYP domain contai... BLink CDD UniProt Pfam
VP1423 gi|28898197|ref|NP_797802.1| hypothetical protein VP1423 ... BLink CDD UniProt Pfam
VP1427 gi|28898201|ref|NP_797806.1| hypothetical protein VP1427 ... BLink CDD UniProt Pfam
VP2631 gi|28899405|ref|NP_799010.1| putative HD-GYP hydrolase dom... BLink CDD UniProt Pfam
VPA0839 gi|28900694|ref|NP_800349.1| hypothetical protein VPA0839 ... BLink CDD UniProt Pfam
Vibrio vulnificus CMCP6
VV11489 gi|27364873|ref|NP_760401.1| HD-GYP domain [Vibrio vulnifi... BLink CDD UniProt Pfam
VV12249 gi|27365573|ref|NP_761101.1| hypothetical protein VV12249 ... BLink CDD UniProt Pfam
VV12280 gi|27365603|ref|NP_761131.1| HD-domain protein [Vibrio vul... BLink CDD UniProt Pfam
VV12288 gi|27365610|ref|NP_761138.1| HDIG domain protein [Vibrio v... BLink CDD UniProt Pfam
VV12295 gi|27365616|ref|NP_761144.1| hypothetical protein VV12295 ... BLink CDD UniProt Pfam
VV12734 gi|27366024|ref|NP_761552.1| ABC-type amino acid transport... BLink CDD UniProt Pfam
VV12748 gi|27366037|ref|NP_761565.1| Response regulator [Vibrio vu... BLink CDD UniProt Pfam
VV20078 gi|27366537|ref|NP_762064.1| Response regulator [Vibrio vu... BLink CDD UniProt Pfam
VV20221 gi|27366675|ref|NP_762202.1| Response regulator [Vibrio vu... BLink CDD UniProt Pfam
VV20465 gi|27366901|ref|NP_762428.1| Response regulator [Vibrio vu... BLink CDD UniProt Pfam
VV20981 gi|27367376|ref|NP_762903.1| Response regulator [Vibrio vu... BLink CDD UniProt Pfam
VV21268 gi|27367644|ref|NP_763171.1| HD-GYP domain [Vibrio vulnifi... BLink CDD UniProt Pfam
VV21467 gi|27367820|ref|NP_763347.1| Chemotactic transducer-relate... BLink CDD UniProt Pfam
Xanthomonas axonopodis pv. citri str. 306
XAC0350 gi|21241124|ref|NP_640706.1| hypothetical protein XAC0350 ... BLink CDD UniProt Pfam
XAC1877 gi|21242621|ref|NP_642203.1| response regulator [Xanthomon... BLink CDD UniProt Pfam
XAC2493 gi|21243226|ref|NP_642808.1| two-component system regulato... BLink CDD UniProt Pfam
Xanthomonas campestris pv. campestris str. ATCC 33913
XCC0350 gi|21229828|ref|NP_635745.1| hypothetical protein XCC0350 ... BLink CDD UniProt Pfam
XCC1854 gi|21231302|ref|NP_637219.1| response regulator [Xanthomon... BLink CDD UniProt Pfam
XCC2361 gi|21231798|ref|NP_637715.1| two-component system regulato... BLink CDD UniProt Pfam
Xylella fastidiosa 9a5c
Xf1113 gi|15837715|ref|NP_298403.1| two-component system, regulat... BLink CDD UniProt Pfam
Yersinia pseudotuberculosis IP 32953
YPTB1709 gi|51596044|ref|YP_070235.1| putative chemotactic transduc... BLink CDD UniProt Pfam
Delta-proteobacteria
Bdellovibrio bacteriovorus HD100
Bd1762 gi|42523253|ref|NP_968633.1| hypothetical protein Bd1762 ... BLink CDD UniProt Pfam
Bd1817 gi|42523303|ref|NP_968683.1| hypothetical protein Bd1817 ... BLink CDD UniProt Pfam
Bd1822 gi|42523308|ref|NP_968688.1| hypothetical protein Bd1822 ... BLink CDD UniProt Pfam
Bd2325 gi|42523774|ref|NP_969154.1| HD-GYP hydrolase domain conta... BLink CDD UniProt Pfam
Bd2421 gi|42523862|ref|NP_969242.1| putative integral membrane pr... BLink CDD UniProt Pfam
Bd3880 gi|42525201|ref|NP_970581.1| hypothetical protein Bd3880 ... BLink CDD UniProt Pfam
Desulfotalea psychrophila LSv54
DP0364 gi|51244216|ref|YP_064100.1| hypothetical protein DP0364 ... BLink CDD UniProt Pfam
DP0365 gi|51244217|ref|YP_064101.1| hypothetical protein DP0365 ... BLink CDD UniProt Pfam
DP0645 gi|51244497|ref|YP_064381.1| related to two-component syst... BLink CDD UniProt Pfam
DP0884 gi|51244736|ref|YP_064620.1| probable two-component system... BLink CDD UniProt Pfam
DP1401 gi|51245253|ref|YP_065137.1| hypothetical protein DP1401 ... BLink CDD UniProt Pfam
DP2020 gi|51245872|ref|YP_065756.1| probable sensory transduction... BLink CDD UniProt Pfam
DP2071 gi|51245923|ref|YP_065807.1| hypothetical protein DP2071 ... BLink CDD UniProt Pfam
DP2113 gi|51245965|ref|YP_065849.1| hypothetical protein DP2113 ... BLink CDD UniProt Pfam
DP2257 gi|51246109|ref|YP_065993.1| hypothetical protein DP2257 ... BLink CDD UniProt Pfam
DP2291 gi|51246143|ref|YP_066027.1| related to two-component syst... BLink CDD UniProt Pfam
Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
DVU0129 gi|46578546|ref|YP_009354.1| sensory box/HDIG domain prote... BLink CDD UniProt Pfam
DVU0491 gi|46578906|ref|YP_009714.1| HDIG domain protein [Desulfov... BLink CDD UniProt Pfam
DVU0666 gi|46579080|ref|YP_009888.1| HD domain protein [Desulfovib... BLink CDD UniProt Pfam
DVU0667 gi|46579081|ref|YP_009889.1| HD domain protein [Desulfovib... BLink CDD UniProt Pfam
DVU0722 gi|46579135|ref|YP_009943.1| response regulator [Desulfovi... BLink CDD UniProt Pfam
DVU0972 gi|46579385|ref|YP_010193.1| HD domain protein [Desulfovib... BLink CDD UniProt Pfam
DVU1020 gi|46579433|ref|YP_010241.1| HD domain/sensory box protein... BLink CDD UniProt Pfam
DVU1181 gi|46579592|ref|YP_010400.1| response regulator [Desulfovi... BLink CDD UniProt Pfam
DVU1562 gi|46579973|ref|YP_010781.1| HAMP domain protein [Desulfov... BLink CDD UniProt Pfam
DVU2515 gi|46580919|ref|YP_011727.1| HD domain protein [Desulfovib... BLink CDD UniProt Pfam
DVU2551 gi|46580955|ref|YP_011763.1| HD domain protein [Desulfovib... BLink CDD UniProt Pfam
DVU2933 gi|46581337|ref|YP_012145.1| response regulator/sensory bo... BLink CDD UniProt Pfam
DVU3123 gi|46581526|ref|YP_012334.1| HD domain protein [Desulfovib... BLink CDD UniProt Pfam
DVUA0086 gi|46562169|ref|YP_009126.1| response regulator [Desulfovi... BLink CDD UniProt Pfam
Geobacter sulfurreducens PCA
GSU0287 gi|39995396|ref|NP_951347.1| HD domain protein [Geobacter ... BLink CDD UniProt Pfam
GSU0699 gi|39995805|ref|NP_951756.1| HD domain protein [Geobacter ... BLink CDD UniProt Pfam
GSU1007 gi|39996110|ref|NP_952061.1| GAF domain/HD domain protein ... BLink CDD UniProt Pfam
GSU1471 gi|39996571|ref|NP_952522.1| HD domain protein [Geobacter ... BLink CDD UniProt Pfam
GSU1654 gi|39996754|ref|NP_952705.1| response regulator, putative ... BLink CDD UniProt Pfam
GSU1891 gi|39996989|ref|NP_952940.1| response regulator [Geobacter... BLink CDD UniProt Pfam
GSU1939 gi|39997037|ref|NP_952988.1| GAF domain/His Kinase A domai... BLink CDD UniProt Pfam
GSU2094 gi|39997192|ref|NP_953143.1| response regulator [Geobacter... BLink CDD UniProt Pfam
GSU2574 gi|39997669|ref|NP_953620.1| response regulator [Geobacter... BLink CDD UniProt Pfam
GSU2622 gi|39997716|ref|NP_953667.1| HAMP domain/GAF domain/HD dom... BLink CDD UniProt Pfam
Epsilon-proteobacteria
Wolinella succinogenes DSM 1740
WS1630 gi|34557946|ref|NP_907761.1| RESPONSE REGULATOR PROTEIN-Ch... BLink CDD UniProt Pfam
WS1726 gi|34558036|ref|NP_907851.1| SIGNAL TRANSDUCTION RESPONSE ... BLink CDD UniProt Pfam
Firmicutes
Bacillus anthracis str. Ames
BA0975 gi|30261100|ref|NP_843477.1| HD domain protein [Bacillus a... BLink CDD UniProt Pfam
Bacillus halodurans C-125
BH0008 gi|15612571|ref|NP_240874.1| hypothetical protein BH0008 ... BLink CDD UniProt Pfam
BH3794 gi|15616356|ref|NP_244661.1| hypothetical protein BH3794 ... BLink CDD UniProt Pfam
Bacillus thuringiensis serovar konkukian str. 97-27
BT9727_0897 gi|49477040|ref|YP_035237.1| HD domain protein [Bacillus... BLink CDD UniProt Pfam
Clostridium acetobutylicum ATCC 824
CAC0277 gi|15893569|ref|NP_346918.1| HD-GYP hydrolase domain conta... BLink CDD UniProt Pfam
CAC0475 gi|15893766|ref|NP_347115.1| HD-GYP domain [Clostridium ac... BLink CDD UniProt Pfam
CAC0853 gi|15894140|ref|NP_347489.1| HD superfamily hydrolase (HD-... BLink CDD UniProt Pfam
CAC2534 gi|15895797|ref|NP_349146.1| HD_GYP hydrolase domain fused... BLink CDD UniProt Pfam
CAC2620 gi|15895878|ref|NP_349227.1| HD-GYP hydrolase domain conta... BLink CDD UniProt Pfam
CAC2837 gi|15896092|ref|NP_349441.1| Fusion HD-GYP domain and HD-h... BLink CDD UniProt Pfam
CAC3251 gi|15896496|ref|NP_349845.1| Sensory transduction protein ... BLink CDD UniProt Pfam
CAC3410 gi|15896651|ref|NP_350000.1| HD-GYP domain (HD superfamily... BLink CDD UniProt Pfam
CAC3650 gi|15896883|ref|NP_350232.1| HD-GYP domain containing prot... BLink CDD UniProt Pfam
Clostridium perfringens str. 13
CPE1560 gi|18310542|ref|NP_562476.1| hypothetical protein CPE1560 ... BLink CDD UniProt Pfam
Clostridium tetani E88
CTC00529 gi|28210269|ref|NP_781213.1| hypothetical protein CTC00529... BLink CDD UniProt Pfam
Geobacillus kaustophilus HTA426
GK0007 gi|56418542|ref|YP_145860.1| hypothetical protein GK0007 ... BLink CDD UniProt Pfam
GK1841 gi|56420376|ref|YP_147694.1| hypothetical protein GK1841 ... BLink CDD UniProt Pfam
GK3110 gi|56421645|ref|YP_148963.1| hypothetical protein GK3110 ... BLink CDD UniProt Pfam
Oceanobacillus iheyensis HTE831
OB0008 gi|23097463|ref|NP_690929.1| hypothetical protein OB0008 ... BLink CDD UniProt Pfam
OB2371 gi|23099826|ref|NP_693292.1| hypothetical protein OB2371 ... BLink CDD UniProt Pfam
Thermoanaerobacter tengcongensis MB4
TTE0038 gi|20806576|ref|NP_621747.1| Response regulators consistin... BLink CDD UniProt Pfam
TTE0042 gi|20806580|ref|NP_621751.1| HD-GYP domain [Thermoanaeroba... BLink CDD UniProt Pfam
TTE0518 gi|20807019|ref|NP_622190.1| HD-GYP domain [Thermoanaeroba... BLink CDD UniProt Pfam
TTE1032 gi|20807511|ref|NP_622682.1| HD-GYP domain [Thermoanaeroba... BLink CDD UniProt Pfam
TTE1721 gi|20808146|ref|NP_623317.1| HD-GYP domain [Thermoanaeroba... BLink CDD UniProt Pfam
TTE2055 gi|20808454|ref|NP_623625.1| HD-GYP domain [Thermoanaeroba... BLink CDD UniProt Pfam
Other phyla
Aquificales
Aquifex aeolicus VF5
AQ_2027 gi|15607008|ref|NP_214390.1| hypothetical protein aq_2027 ... BLink CDD UniProt Pfam
Deinococcus-Thermus
Deinococcus radiodurans R1
DR0039 gi|15805080|ref|NP_293765.1| hypothetical protein DR0039 ... BLink CDD UniProt Pfam
DR0719 gi|15805745|ref|NP_294442.1| hypothetical protein DR0719 ... BLink CDD UniProt Pfam
DR1565 gi|15806574|ref|NP_295288.1| hypothetical protein DR1565 ... BLink CDD UniProt Pfam
DRA0342 gi|15808001|ref|NP_285665.1| GGDEF family protein [Deinoco... BLink CDD UniProt Pfam
Thermus thermophilus HB27
TTC0629 gi|46198937|ref|YP_004604.1| HD-hydrolase domain [Thermus ... BLink CDD UniProt Pfam
TTC0633 gi|46198941|ref|YP_004608.1| two-component response regula... BLink CDD UniProt Pfam
TTC1010 gi|46199312|ref|YP_004979.1| integral membrane protein/HD-... BLink CDD UniProt Pfam
TTP0079 gi|46255150|ref|YP_006062.1| hypothetical protein TTP0079 ... BLink CDD UniProt Pfam
TTP0167 gi|46255238|ref|YP_006150.1| hypothetical membrane associa... BLink CDD UniProt Pfam
Planctomycetes
Rhodopirellula baltica SH 1
RB161 gi|32470755|ref|NP_863748.1| response regulator [Rhodopire... BLink CDD UniProt Pfam
RB1009 gi|32471194|ref|NP_864187.1| response regulator [Rhodopire... BLink CDD UniProt Pfam
RB1656 gi|32471539|ref|NP_864532.1| hypothetical protein RB1656 ... BLink CDD UniProt Pfam
RB1759 gi|32471581|ref|NP_864574.1| conserved hypothetical protei... BLink CDD UniProt Pfam
RB5964 gi|32473997|ref|NP_866991.1| probable response regulatory ... BLink CDD UniProt Pfam
RB10065 gi|32476231|ref|NP_869225.1| conserved hypothetical protei... BLink CDD UniProt Pfam
Thermotogales
Thermotoga maritima MSB8
TM0037 gi|15642812|ref|NP_227853.1| hypothetical protein TM0037 ... BLink CDD UniProt Pfam
TM0186 gi|15642960|ref|NP_228001.1| response regulator [Thermot ... BLink CDD UniProt Pfam
TM0739 gi|15643502|ref|NP_228548.1| hypothetical protein TM0739 ... BLink CDD UniProt Pfam
TM1145 gi|15643902|ref|NP_228951.1| hypothetical protein TM1145 ... BLink CDD UniProt Pfam
TM1147 gi|15643904|ref|NP_228953.1| hypothetical protein TM1147 ... BLink CDD UniProt Pfam
TM1170 gi|15643926|ref|NP_228975.1| ABC transporter, periplasmi ... BLink CDD UniProt Pfam
TM1467 gi|15644216|ref|NP_229267.1| hypothetical protein TM1467 ... BLink CDD UniProt Pfam
TM1678 gi|15644426|ref|NP_229478.1| hypothetical protein TM1678 ... BLink CDD UniProt Pfam
TM1682 gi|15644430|ref|NP_229482.1| hypothetical protein TM1682 ... BLink CDD UniProt Pfam
TM1699 gi|15644447|ref|NP_229499.1| hypothetical protein TM1699 ... BLink CDD UniProt Pfam
Spirochetes
Borrelia burgdorferi B31
BB0374 gi|15594719|ref|NP_212508.1| hypothetical protein BB0374 ... BLink CDD UniProt Pfam
Borrelia garinii PBi
BG0373 gi|51598630|ref|YP_072818.1| hypothetical protein BG0373 ... BLink CDD UniProt Pfam
Leptospira interrogans serovar Lai str. 56601
LA2383 gi|24215083|ref|NP_712564.1| HD-GYP domain [Leptospira int... BLink CDD UniProt Pfam
LA2847 gi|24215547|ref|NP_713028.1| cGMP-dependent 3',5'-cyclic p... BLink CDD UniProt Pfam
Treponema denticola ATCC 35405
TDE1256 gi|42526765|ref|NP_971863.1| HD domain protein [Treponema ... BLink CDD UniProt Pfam
TDE1467 gi|42526975|ref|NP_972073.1| HD domain protein [Treponema ... BLink CDD UniProt Pfam
TDE2302 gi|42527804|ref|NP_972902.1| HD domain protein [Treponema ... BLink CDD UniProt Pfam
TDE2659 gi|42528159|ref|NP_973257.1| GAF domain/HD domain protein ... BLink CDD UniProt Pfam
Treponema pallidum subsp. pallidum str. Nichols
TP0764 gi|15639751|ref|NP_219201.1| hypothetical protein TP0764 ... BLink CDD UniProt Pfam
TP0877 gi|15639862|ref|NP_219312.1| hypothetical protein TP0877 ... BLink CDD UniProt Pfam
TP0912 gi|15639897|ref|NP_219347.1| hypothetical protein TP0912 ... BLink CDD UniProt Pfam
Please send your corrections, questions and comments to Michael Galperin.