Diguanylate cyclase (GGDEF) domains in various bacteria and archaea
Acidobacteria
. Acidobacteria bacterium Ellin345 ...................... 6 hits
. Solibacter usitatus Ellin6076 ......................... 3 hits
Chloroflexi
. Dehalococcoides ethenogenes 195 ....................... 1 hit
. Dehalococcoides sp. CBDB1 ............................. 1 hit
Deinococcus-Thermus group
. Deinococcus geothermalis DSM 11300 .................... 9 hits
. Deinococcus radiodurans R1 ............................ 16 hits
. Thermus thermophilus HB27 ............................. 6 hits*
Green sulfur bacteria
. Chlorobium chlorochromatii CaD3 ....................... 1 hit
. Chlorobium phaeobacteroides DSM 266 ................... 1 hit
. Chlorobium tepidum TLS ................................ 1 hit
. Pelodictyon luteolum DSM 273 .......................... 1 hit
Spirochaetes
. Borrelia afzelii PKo .................................. 1 hit
. Borrelia burgdorferi B31 .............................. 1 hit
. Borrelia garinii PBi .................................. 1 hit
. Leptospira borgpetersenii serovar Hardjo-bovis L550 ... 4 hits
. Leptospira interrogans serovar Lai str. 56601 ......... 16 hits
. Treponema denticola ATCC 35405 ........................ 9 hits
. Treponema pallidum subsp. pallidum str. Nichols ....... 1 hit*
Unclassified Proteobacteria
. Magnetococcus sp. MC-1 ................................ 42 hits
Other phyla
. Aquifex aeolicus VF5 .................................. 11 hits*
. Rhodopirellula baltica SH 1 ........................... 9 hits*
. Salinibacter ruber DSM 13855 .......................... 1 hit
. Thermotoga maritima MSB8 .............................. 9 hits*
Archaea
. Aeropyrum pernix ...................................... 0 hits*
. Methanopyrus kandleri AV19 ............................ 0 hits*
Acidobacteria
Acidobacteria bacterium Ellin345
Acid345_0185 gi|94967216|ref|YP_589264.1| multi sensor diguanylate cy... BLink CDD UniProt Pfam
Acid345_0204 gi|94967235|ref|YP_589283.1| diguanylate cyclase [Acidob... BLink CDD UniProt Pfam
Acid345_0961 gi|94967990|ref|YP_590038.1| diguanylate cyclase with PA... BLink CDD UniProt Pfam
Acid345_1960 gi|94968987|ref|YP_591035.1| diguanylate cyclase with PA... BLink CDD UniProt Pfam
Acid345_3843 gi|94970869|ref|YP_592917.1| diguanylate cyclase [Acidob... BLink CDD UniProt Pfam
Acid345_4131 gi|94971157|ref|YP_593205.1| diguanylate cyclase [Acidob... BLink CDD UniProt Pfam
Solibacter usitatus Ellin6076
Acid_4616 gi|116623704|ref|YP_825860.1| response regulator receiver ... BLink CDD UniProt Pfam
Acid_4627 gi|116623715|ref|YP_825871.1| diguanylate cyclase [Solibac... BLink CDD UniProt Pfam
Acid_1179 gi|116620302|ref|YP_822458.1| diguanylate cyclase [Solibac... BLink CDD UniProt Pfam
Chloroflexi
Dehalococcoides ethenogenes 195
DET1381 gi|57233885|ref|YP_182092.1| GGDEF domain/HD domain protei... BLink CDD UniProt Pfam
Dehalococcoides sp. CBDB1 [GNS bacteria] taxid 255470
cbdbA1335 gi|73749065|ref|YP_308304.1| GGDEF domain [Dehalococcoides... BLink CDD UniProt Pfam
Deinococcus-Thermus
Deinococcus geothermalis DSM 11300
GGDEF only
Dgeo_0380 gi|94984488|ref|YP_603852.1| diguanylate cyclase [Deinococ... BLink CDD UniProt Pfam
Dgeo_0579 gi|94984686|ref|YP_604050.1| diguanylate cyclase [Deinococ... BLink CDD UniProt Pfam
Dgeo_0797 gi|94984904|ref|YP_604268.1| diguanylate cyclase [Deinococ... BLink CDD UniProt Pfam
Dgeo_1614 gi|94985714|ref|YP_605078.1| diguanylate cyclase with PAS/... BLink CDD UniProt Pfam
Dgeo_1674 gi|94985774|ref|YP_605138.1| diguanylate cyclase [Deinococ... BLink CDD UniProt Pfam
Dgeo_1744 gi|94985844|ref|YP_605208.1| diguanylate cyclase [Deinococ... BLink CDD UniProt Pfam
Dgeo_2370 gi|94971839|ref|YP_593879.1| diguanylate cyclase [Deinococ... BLink CDD UniProt Pfam
Dgeo_2479 gi|94971947|ref|YP_593987.1| diguanylate cyclase with GAF ... BLink CDD UniProt Pfam
Dgeo_2740 gi|94972207|ref|YP_594247.1| diguanylate cyclase [Deinococ... BLink CDD UniProt Pfam
Deinococcus radiodurans R1
GGDEF only
DR0267 gi|15805298|ref|NP_293990.1| conserved hypothetical protei... BLink CDD UniProt Pfam
DR0605 gi|15805632|ref|NP_294328.1| GGDEF family protein [Deinoco... BLink CDD UniProt Pfam
DR0981 gi|15806005|ref|NP_294705.1| GGDEF family protein [Deinoco... BLink CDD UniProt Pfam
DR1090 gi|15806110|ref|NP_294814.1| GGDEF family protein [Deinoco... BLink CDD UniProt Pfam
DR1633 gi|15806638|ref|NP_295356.1| GGDEF family protein [Deinoco... BLink CDD UniProt Pfam
DR2498 gi|15807483|ref|NP_296218.1| GGDEF family protein [Deinoco... BLink CDD UniProt Pfam
DRA0181 gi|15807849|ref|NP_285505.1| GGDEF family protein [Deinoco... BLink CDD UniProt Pfam
DRA0297 gi|15807957|ref|NP_285620.1| GGDEF family protein [Deinoco... BLink CDD UniProt Pfam
DRA0342 gi|15808001|ref|NP_285665.1| GGDEF family protein [Deinoco... BLink CDD UniProt Pfam
DRB0034 gi|10957453|ref|NP_051575.1| GGDEF family protein [Deinoco... BLink CDD UniProt Pfam
DRB0044 gi|10957456|ref|NP_051584.1| GGDEF family protein [Deinoco... BLink CDD UniProt Pfam
DRB0093 gi|10957409|ref|NP_051626.1| GGDEF family protein [Deinoco... BLink CDD UniProt Pfam
GGDEF-EAL
DR0466 gi|15805493|ref|NP_294189.1| sensory box/GGDEF family prot... BLink CDD UniProt Pfam
DR0750 gi|15805776|ref|NP_294474.1| sensory box/GGDEF family prot... BLink CDD UniProt Pfam
DR1629 gi|15806634|ref|NP_295352.1| c-di-GMP phosphodiesterase A ... BLink CDD UniProt Pfam
DR2299 gi|15807290|ref|NP_296020.1| GGDEF family protein [Deinoco... BLink CDD UniProt Pfam
Thermus thermophilus HB27
GGDEF only
TTC0402 gi|46198710|ref|YP_004377.1| hypothetical protein TTC0402 ... BLink CDD UniProt Pfam
TTC0446 gi|46198754|ref|YP_004421.1| putative response regulator ... BLink CDD UniProt Pfam
TTC0627 gi|46198935|ref|YP_004602.1| hypothetical protein TTC0627 ... BLink CDD UniProt Pfam
TTC1278 gi|46199580|ref|YP_005247.1| diguanylate cyclase/phosphodi... BLink CDD UniProt Pfam
TTC1397 gi|46199699|ref|YP_005366.1| putative response regulator p... BLink CDD UniProt Pfam
*TTP0172 gi|46255243|ref|YP_006155.1| diguanylate cyclase/phosphodi... BLink CDD UniProt Pfam
*TTC1973 gi|46200275|ref|YP_005942.1| cbs domain proteins [Thermus ... BLink CDD UniProt Pfam
GGDEF-EAL
TTC0422 gi|46198730|ref|YP_004397.1| sensory transduction histidin... BLink CDD UniProt Pfam
Green sulfur bacteria
Chlorobium chlorochromatii CaD3
Cag_0921 gi|78171088|gb|ABB28184.1| diguanylate cyclase (GGDEF doma... BLink CDD UniProt Pfam
Chlorobium phaeobacteroides DSM 266
Cpha266_1318 gi|119357129|ref|YP_911773.1| diguanylate cyclase [Chlor... BLink CDD UniProt Pfam
Chlorobium tepidum TLS
CT1105 gi|21673931|ref|NP_661996.1| GGDEF domain protein [Chlorob... BLink CDD UniProt Pfam
Pelodictyon luteolum DSM 273
Plut_1051 gi|78186913|ref|YP_374956.1| diguanylate cyclase (GGDEF do... BLink CDD UniProt Pfam
Spirochaetes
Borrelia afzelii PKo
BAPKO_0435 gi|111115247|ref|YP_709865.1| response regulatory protein ... BLink CDD UniProt Pfam
Borrelia burgdorferi B31
BB0419 gi|15594764|ref|NP_212553.1| response regulatory protein ... BLink CDD UniProt Pfam
Borrelia garinii PBi
BG0422 gi|51573247|gb|AAU07272.1| response regulatory protein [Bo... BLink CDD UniProt Pfam
Leptospira borgpetersenii serovar Hardjo-bovis L550
LBL_0818 gi|116327587|ref|YP_797307.1| GGDEF domain protein [Leptos... BLink CDD UniProt Pfam
LBL_1041 gi|116327781|ref|YP_797501.1| Two-component response regul... BLink CDD UniProt Pfam
LBL_1891 gi|116328538|ref|YP_798258.1| GGDEF domain receiver compon... BLink CDD UniProt Pfam
LBL_4068 gi|116329620|ref|YP_799339.1| GGDEF family protein [Leptos... BLink CDD UniProt Pfam
Leptospira interrogans serovar Lai str. 56601
GGDEF only
LA1483 gi|24214183|ref|NP_711664.1| GGDEF domain protein [Leptosp... BLink CDD UniProt Pfam
LA2528 gi|24215228|ref|NP_712709.1| response regulator [Leptospir... BLink CDD UniProt Pfam
LA2704 gi|24215404|ref|NP_712885.1| GGDEF family protein [Leptosp... BLink CDD UniProt Pfam
LA2926 gi|24215625|ref|NP_713106.1| GGDEF family protein [Leptosp... BLink CDD UniProt Pfam
LA2927 gi|24215627|ref|NP_713108.1| sensory box/GGDEF family prot... BLink CDD UniProt Pfam
LA2929 gi|24215628|ref|NP_713109.1| sensory box/GGDEF family prot... BLink CDD UniProt Pfam
LA2930 gi|24215629|ref|NP_713110.1| GGDEF family protein [Leptosp... BLink CDD UniProt Pfam
LA2931 gi|24215630|ref|NP_713111.1| sensory box/GGDEF family prot... BLink CDD UniProt Pfam
LA2932 gi|24215631|ref|NP_713112.1| GGDEF family protein [Leptosp... BLink CDD UniProt Pfam
LA2933 gi|24215632|ref|NP_713113.1| GGDEF family protein [Leptosp... BLink CDD UniProt Pfam
LA3929 gi|24216628|ref|NP_714109.1| cGMP-specific phosphodiestera... BLink CDD UniProt Pfam
LB237 gi|24217298|ref|NP_714781.1| GGDEF family protein [Leptosp... BLink CDD UniProt Pfam
LB240 gi|24217301|ref|NP_714784.1| GGDEF family protein [Leptosp... BLink CDD UniProt Pfam
GGDEF-EAL
LA1185 gi|24213885|ref|NP_711366.1| response regulator [Leptospir... BLink CDD UniProt Pfam
LA3909 gi|24216608|ref|NP_714089.1| hypothetical protein LA3909 ... BLink CDD UniProt Pfam
LB235 gi|24217296|ref|NP_714779.1| response regulator [Leptospir... BLink CDD UniProt Pfam
Treponema denticola ATCC 35405
GGDEF only
TDE0125 gi|42525644|ref|NP_970742.1| GGDEF domain protein [Trepone... BLink CDD UniProt Pfam
TDE1456 gi|42526964|ref|NP_972062.1| GGDEF domain protein [Trepone... BLink CDD UniProt Pfam
TDE1685 gi|42527191|ref|NP_972289.1| GGDEF domain protein [Trepone... BLink CDD UniProt Pfam
TDE2580 gi|42528080|ref|NP_973178.1| GGDEF domain protein [Trepone... BLink CDD UniProt Pfam
TDE2582 gi|42528082|ref|NP_973180.1| GGDEF domain protein [Trepone... BLink CDD UniProt Pfam
TDE2725 gi|42528225|ref|NP_973323.1| cyclic nucleotide binding dom... BLink CDD UniProt Pfam
TDE2726 gi|42528226|ref|NP_973324.1| cyclic nucleotide binding dom... BLink CDD UniProt Pfam
GGDEF-EAL
TDE0128 gi|42525647|ref|NP_970745.1| HAMP domain/GGDEF domain/EAL ... BLink CDD UniProt Pfam
TDE2075 gi|42527578|ref|NP_972676.1| GGDEF domain/EAL domain prote... BLink CDD UniProt Pfam
Treponema pallidum subsp. pallidum str. Nichols
TP0981 gi|15639965|ref|NP_219418.1| sensory transduction histidin... BLink CDD UniProt Pfam
*TP0172 gi|15639165|ref|NP_218611.1| T. pallidum predicted coding ... BLink CDD UniProt Pfam
unclassified Proteobacteria
Magnetococcus sp. MC-1
GGDEF only
Mmc1_0193 gi|117923509|ref|YP_864126.1| diguanylate cyclase with PAS... BLink CDD UniProt Pfam
Mmc1_0233 gi|117923549|ref|YP_864166.1| cyclic nucleotide-binding pr... BLink CDD UniProt Pfam
Mmc1_0304 gi|117923620|ref|YP_864237.1| diguanylate cyclase [Magneto... BLink CDD UniProt Pfam
Mmc1_0410 gi|117923725|ref|YP_864342.1| diguanylate cyclase [Magneto... BLink CDD UniProt Pfam
Mmc1_1148 gi|117924448|ref|YP_865065.1| diguanylate cyclase [Magneto... BLink CDD UniProt Pfam
Mmc1_1387 gi|117924687|ref|YP_865304.1| cyclic nucleotide-binding pr... BLink CDD UniProt Pfam
Mmc1_1399 gi|117924699|ref|YP_865316.1| response regulator receiver ... BLink CDD UniProt Pfam
Mmc1_1404 gi|117924704|ref|YP_865321.1| diguanylate cyclase [Magneto... BLink CDD UniProt Pfam
Mmc1_1484 gi|117924782|ref|YP_865399.1| response regulator receiver ... BLink CDD UniProt Pfam
Mmc1_1509 gi|117924807|ref|YP_865424.1| response regulator receiver ... BLink CDD UniProt Pfam
Mmc1_1649 gi|117924947|ref|YP_865564.1| diguanylate cyclase [Magneto... BLink CDD UniProt Pfam
Mmc1_1656 gi|117924954|ref|YP_865571.1| diguanylate cyclase [Magneto... BLink CDD UniProt Pfam
Mmc1_1733 gi|117925030|ref|YP_865647.1| diguanylate cyclase [Magneto... BLink CDD UniProt Pfam
Mmc1_1896 gi|117925193|ref|YP_865810.1| diguanylate cyclase with PAS... BLink CDD UniProt Pfam
Mmc1_2369 gi|117925658|ref|YP_866275.1| diguanylate cyclase [Magneto... BLink CDD UniProt Pfam
Mmc1_2636 gi|117925921|ref|YP_866538.1| diguanylate cyclase [Magneto... BLink CDD UniProt Pfam
Mmc1_2943 gi|117926223|ref|YP_866840.1| response regulator receiver ... BLink CDD UniProt Pfam
Mmc1_2973 gi|117926253|ref|YP_866870.1| diguanylate cyclase [Magneto... BLink CDD UniProt Pfam
Mmc1_3012 gi|117926292|ref|YP_866909.1| diguanylate cyclase [Magneto... BLink CDD UniProt Pfam
Mmc1_3152 gi|117926431|ref|YP_867048.1| diguanylate cyclase [Magneto... BLink CDD UniProt Pfam
Mmc1_3223 gi|117926502|ref|YP_867119.1| diguanylate cyclase [Magneto... BLink CDD UniProt Pfam
Mmc1_3430 gi|117926705|ref|YP_867322.1| diguanylate cyclase [Magneto... BLink CDD UniProt Pfam
Mmc1_3507 gi|117926781|ref|YP_867398.1| diguanylate cyclase [Magneto... BLink CDD UniProt Pfam
Mmc1_3528 gi|117926802|ref|YP_867419.1| response regulator receiver ... BLink CDD UniProt Pfam
Mmc1_3530 gi|117926804|ref|YP_867421.1| diguanylate cyclase with PAS... BLink CDD UniProt Pfam
GGDEF-EAL
Mmc1_0403 gi|117923718|ref|YP_864335.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Mmc1_0408 gi|117923723|ref|YP_864340.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Mmc1_0887 gi|117924195|ref|YP_864812.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Mmc1_1004 gi|117924311|ref|YP_864928.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Mmc1_1710 gi|117925008|ref|YP_865625.1| response regulator receiver ... BLink CDD UniProt Pfam
Mmc1_1795 gi|117925092|ref|YP_865709.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Mmc1_1829 gi|117925126|ref|YP_865743.1| response regulator receiver ... BLink CDD UniProt Pfam
Mmc1_1949 gi|117925246|ref|YP_865863.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Mmc1_2220 gi|117925510|ref|YP_866127.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Mmc1_2227 gi|117925517|ref|YP_866134.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Mmc1_2380 gi|117925669|ref|YP_866286.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Mmc1_2390 gi|117925679|ref|YP_866296.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Mmc1_2450 gi|117925739|ref|YP_866356.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Mmc1_2478 gi|117925767|ref|YP_866384.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Mmc1_2641 gi|117925926|ref|YP_866543.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Mmc1_2972 gi|117926252|ref|YP_866869.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Mmc1_3395 gi|117926670|ref|YP_867287.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Other phyla
Aquifex aeolicus VF5
GGDEF only
AQ_035 gi|2982791|gb|AAC06416.1| hypothetical protein [Aquifex ae... BLink CDD UniProt Pfam
AQ_265 gi|2982975|gb|AAC06589.1| hypothetical protein [Aquifex ae... BLink CDD UniProt Pfam
AQ_429 gi|2983095|gb|AAC06701.1| putative protein [Aquifex aeolic... BLink CDD UniProt Pfam
AQ_563 gi|2983209|gb|AAC06808.1| hypothetical protein [Aquifex ae... BLink CDD UniProt Pfam
AQ_689 gi|2983285|gb|AAC06878.1| hypothetical protein [Aquifex ae... BLink CDD UniProt Pfam
AQ_1455 gi|2983853|gb|AAC07407.1| hypothetical protein [Aquifex ae... BLink CDD UniProt Pfam
AQ_2027 gi|2984261|gb|AAC07788.1| hypothetical protein [Aquifex ae... BLink CDD UniProt Pfam
*AQ_387 gi|2983060|gb|AAC06668.1| putative protein [Aquifex aeolic... BLink CDD UniProt Pfam
GGDEF-EAL
AQ_027 gi|2982789|gb|AAC06414.1| hypothetical protein [Aquifex ae... BLink CDD UniProt Pfam
AQ_367 gi|2983047|gb|AAC06656.1| hypothetical protein [Aquifex ae... BLink CDD UniProt Pfam
AQ_1151 gi|2983622|gb|AAC07191.1| hypothetical protein [Aquifex ae... BLink CDD UniProt Pfam
AQ_1442 gi|2983839|gb|AAC07394.1| hypothetical protein [Aquifex ae... BLink CDD UniProt Pfam
Rhodopirellula baltica SH 1
GGDEF only
RB1357 gi|32471379|ref|NP_864372.1| hypothetical protein RB1357 ... BLink CDD UniProt Pfam
RB1656 gi|32471539|ref|NP_864532.1| hypothetical protein RB1656 ... BLink CDD UniProt Pfam
RB5465 gi|32473722|ref|NP_866716.1| probable two-component respon... BLink CDD UniProt Pfam
RB5964 gi|32473997|ref|NP_866991.1| probable response regulatory ... BLink CDD UniProt Pfam
RB10308 gi|32476363|ref|NP_869357.1| probable response regulatory ... BLink CDD UniProt Pfam
RB12183 gi|32477364|ref|NP_870358.1| hypothetical protein RB12183 ... BLink CDD UniProt Pfam
RB12571 gi|32477591|ref|NP_870585.1| GGDEF family protein [Rhodopi... BLink CDD UniProt Pfam
*RB7781 gi|32475029|ref|NP_868023.1| adenylate cyclase 1 [Rhodopir... BLink CDD UniProt Pfam
*RB5734 gi|32473869|ref|NP_866863.1| hypothetical protein RB5734 ... BLink CDD UniProt Pfam
GGDEF-EAL
RB3251 gi|32472401|ref|NP_865395.1| hypothetical protein RB3251 ... BLink CDD UniProt Pfam
RB3605 gi|32472612|ref|NP_865606.1| conserved hypothetical protei... BLink CDD UniProt Pfam
Salinibacter ruber DSM 13855
SRU_0251 gi|83814875|ref|YP_444397.1| sensory box/ggdef family prot... BLink CDD UniProt Pfam
Thermotoga maritima MSB8
GGDEF only
TM0107 gi|15642882|ref|NP_227923.1| hypothetical protein TM0107 ... BLink CDD UniProt Pfam
TM0143 gi|15642917|ref|NP_227958.1| response regulator [Thermotog... BLink CDD UniProt Pfam
TM0842 gi|15643605|ref|NP_228651.1| response regulator [Thermotog... BLink CDD UniProt Pfam
TM0972 gi|15643732|ref|NP_228780.1| conserved hypothetical protei... BLink CDD UniProt Pfam
TM1163 gi|15643920|ref|NP_228969.1| conserved hypothetical protei... BLink CDD UniProt Pfam
TM1184 gi|15643940|ref|NP_228989.1| pleD-related protein [Thermot... BLink CDD UniProt Pfam
TM1588 gi|15644336|ref|NP_229388.1| conserved hypothetical protei... BLink CDD UniProt Pfam
TM1594 gi|15644342|ref|NP_229394.1| conserved hypothetical protei... BLink CDD UniProt Pfam
TM1788 gi|15644532|ref|NP_229585.1| conserved hypothetical protei... BLink CDD UniProt Pfam
*TM1830 gi|15644574|ref|NP_229627.1| hypothetical protein TM1830 ... BLink CDD UniProt Pfam
*TM0471 gi|15643237|ref|NP_228281.1| hypothetical protein TM0471 ... BLink CDD UniProt Pfam
Archaea
Aeropyrum pernix
*APE1864 gi|14601679|ref|NP_148220.1| hypothetical protein APE1864 ... BLink CDD UniProt Pfam
Methanopyrus kandleri AV19
*MK0296 gi|20093736|ref|NP_613583.1| Predicted diguamylate cyclase... BLink CDD UniProt Pfam
Please send your corrections, questions and comments to Michael Galperin