Diguanylate cyclase (GGDEF) domains in Firmicutes
Firmicutes
. Bacillus anthracis str. Ames ................................ 9 hits*
. Bacillus cereus ATCC 14579 .................................. 7 hits*
. Bacillus clausii KSM-K16 .................................... 1 hit
. Bacillus licheniformis ATCC 14580 ........................... 4 hits*
. Bacillus halodurans C-125 ................................... 4 hits*
. Bacillus subtilis subsp. subtilis str. 168 .................. 4 hits*
. Bacillus thuringiensis serovar konkukian str. 97-27 ......... 9 hits*
. Carboxydothermus hydrogenoformans Z-2901 .................... 11 hits
. Clostridium acetobutylicum ATCC 824 ......................... 10 hits*
. Clostridium difficile 630 ................................... 36 hits
. Clostridium novyi NT ........................................ 7 hits
. Clostridium perfringens str. 13 ............................. 6 hits*
. Clostridium tetani E88 ...................................... 6 hits*
. Desulfitobacterium hafniense Y51 ............................ 20 hits
. Enterococcus faecalis V583 .................................. 1 hit
. Geobacillus kaustophilus HTA426 ............................. 8 hits*
. Lactobacillus acidophilus NCFM .............................. 1 hit
. Lactobacillus brevis ATCC 367 ............................... 2 hits
. Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 ...... 3 hits
. Lactobacillus johnsonii NCC 533 ............................. 0 hits*
. Lactobacillus plantarum WCFS1 ............................... 3 hits*
. Lactobacillus salivarius subsp. salivarius UCC118 ........... 1 hit
. Lactococcus lactis subsp. lactis Il1403 ..................... 0 hits*
. Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 .... 1 hit
. Listeria innocua Clip11262 .................................. 3 hits*
. Listeria monocytogenes EGD-e ................................ 3 hits*
. Listeria welshimeri serovar 6b str. SLCC5334 ................ 4 hits*
. Moorella thermoacetica ATCC 39073 ........................... 8 hits*
. Mycoplasma hyopneumoniae 232 ................................ 0 hits*
. Mycoplasma mobile 163K ...................................... 0 hits*
. Mycoplasma pulmonis UAB CTIP ................................ 0 hits*
. Mycoplasma synoviae 53 ...................................... 0 hits*
. Oceanobacillus iheyensis HTE831 ............................. 3 hits*
. Oenococcus oeni PSU-1 ....................................... 1 hit
. Pediococcus pentosaceus ATCC 25745 .......................... 1 hit
. Staphylococcus aureus subsp. aureus N315 .................... 1 hit*
. Staphylococcus epidermidis ATCC 12228 ....................... 1 hit*
. Staphylococcus haemolyticus JCSC1435 ........................ 1 hit*
. Streptococcus agalactiae 2603V/R ............................ 0 hits*
. Streptococcus mutans UA159 .................................. 0 hits*
. Streptococcus pneumoniae TIGR4 .............................. 0 hits*
. Streptococcus pyogenes M1 GAS ............................... 0 hits*
. Streptococcus thermophilus CNRZ1066 ......................... 0 hits*
. Symbiobacterium thermophilum IAM 14863 ....................... 9 hits
. Syntrophomonas wolfei subsp. wolfei str. Goettingen ......... 8 hits
. Thermoanaerobacter tengcongensis MB4 ........................ 6 hits*
Firmicutes
Bacillus anthracis str. Ames
GGDEF only
BA4213 gi|30264071|ref|NP_846448.1| hypothetical protein BA4213 ... BLink CDD UniProt Pfam
BA4263 gi|30264120|ref|NP_846497.1| sensory box/GGDEF family prot... BLink CDD UniProt Pfam
BA5664 gi|30265434|ref|NP_847811.1| GGDEF domain protein [Bacillu... BLink CDD UniProt Pfam
*BA5476 gi|30265263|ref|NP_847640.1| hypothetical protein BA5476 ... BLink CDD UniProt Pfam
*BA5719 gi|30265488|ref|NP_847865.1| DHH subfamily 1 protein [Baco... BLink CDD UniProt Pfam
GGDEF-EAL
BA0548 gi|47525821|ref|YP_017170.1| sensory box/ggdef family prot... BLink CDD UniProt Pfam
BA0628 gi|47525907|ref|YP_017256.1| sensory box/ggdef family prot... BLink CDD UniProt Pfam
BA2533 gi|47527823|ref|YP_019172.1| sensory box/ggdef family prot... BLink CDD UniProt Pfam
BA3879 gi|47529169|ref|YP_020518.1| sensory box/ggdef family prot... BLink CDD UniProt Pfam
BA5543 gi|47530863|ref|YP_022212.1| sensory box/ggdef family prot... BLink CDD UniProt Pfam
BA5593 gi|47530915|ref|YP_022264.1| sensory box/ggdef family prot... BLink CDD UniProt Pfam
Bacillus cereus ATCC 14579
GGDEF only
BC3997 gi|30022085|ref|NP_833716.1| Diguanylate cyclase/phosphodi... BLink CDD UniProt Pfam
BC4044 gi|30022131|ref|NP_833762.1| Sensory box/GGDEF family prot... BLink CDD UniProt Pfam
BC5414 gi|30023444|ref|NP_835075.1| GGDEF family protein [Bacillu... BLink CDD UniProt Pfam
*BC5472 gi|30023494|ref|NP_835125.1| phosphoesterase, DHH family ... BLink CDD UniProt Pfam
*BC5236 gi|30023268|ref|NP_834899.1| Diguanylate cyclase/phosphodi... BLink CDD UniProt Pfam
GGDEF-EAL
BC0547 gi|30018735|ref|NP_830366.1| Sensory box/GGDEF family prot... BLink CDD UniProt Pfam
BC0628 gi|30018813|ref|NP_830444.1| Sensory box/GGDEF family prot... BLink CDD UniProt Pfam
BC3747 gi|30021841|ref|NP_833472.1| Sensory box/GGDEF family prot... BLink CDD UniProt Pfam
BC5302 gi|30023334|ref|NP_834965.1| Sensory box/GGDEF family prot... BLink CDD UniProt Pfam
Bacillus clausii KSM-K16
ABC4103 gi|56965860|ref|YP_177594.1| hypothetical protein ABC4103 ... BLink CDD UniProt Pfam
Bacillus halodurans C-125
BH2233 gi|15614796|ref|NP_243099.1| hypothetical protein BH2233 ... BLink CDD UniProt Pfam
BH2234 gi|15614797|ref|NP_243100.1| response regulatory protein (... BLink CDD UniProt Pfam
BH2971 gi|15615533|ref|NP_243837.1| hypothetical protein BH2971 ... BLink CDD UniProt Pfam
BH3036 gi|15615598|ref|NP_243902.1| two-component sensor histidin... BLink CDD UniProt Pfam
*BH4031 gi|15616593|ref|NP_244899.1| hypothetical protein BH4031 ... BLink CDD UniProt Pfam
Bacillus licheniformis ATCC 14580
BLi01496 gi|52079889|ref|YP_078680.1| GGDEF, sensory domain contain... BLink CDD UniProt Pfam
BLi02306 gi|52080677|ref|YP_079468.1| GGDEF-domain containing prote... BLink CDD UniProt Pfam
BLi03109 gi|52081460|ref|YP_080251.1| YtrP [Bacillus licheniformis ... BLink CDD UniProt Pfam
BLi04233 gi|52082514|ref|YP_081305.1| conserved membrane protein Yd... BLink CDD UniProt Pfam
*BLi04354 gi|52082628|ref|YP_081419.1| putative phosphoesterase fami... BLink CDD UniProt Pfam
Bacillus subtilis subsp. subtilis str. 168
ykoW gi|50812223|ref|YP_054577.1| hypothetical protein BSU13420... BLink CDD UniProt Pfam
yhcK gi|16077977|ref|NP_388793.1| hypothetical protein BSU09120... BLink CDD UniProt Pfam
ytrP gi|16080017|ref|NP_390843.1| hypothetical protein BSU29650... BLink CDD UniProt Pfam
ydaK gi|16077495|ref|NP_388309.1| hypothetical protein BSU04280... BLink CDD UniProt Pfam
*yybT gi|16081103|ref|NP_391931.1| hypothetical protein BSU40510... BLink CDD UniProt Pfam
Bacillus thuringiensis serovar konkukian str. 97-27
GGDEF only
BT9727_3739 gi|49479374|ref|YP_038058.1| hypothetical protein BT9727... BLink CDD UniProt Pfam
BT9727_3785 gi|49478505|ref|YP_038104.1| possible sensory box/GGDEF ... BLink CDD UniProt Pfam
BT9727_5094 gi|49480448|ref|YP_039404.1| conserved hypothetical prot... BLink CDD UniProt Pfam
*BT9727_4917 gi|49480787|ref|YP_039226.1| hypothetical protein BT9727... BLink CDD UniProt Pfam
GGDEF-EAL
BT9727_0460 gi|49481708|ref|YP_034808.1| sensory box/GGDEF family pr... BLink CDD UniProt Pfam
BT9727_0539 gi|49476849|ref|YP_034886.1| sensory box, GGDEF family p... BLink CDD UniProt Pfam
BT9727_2314 gi|49477748|ref|YP_036640.1| sensory box/GGDEF family pr... BLink CDD UniProt Pfam
BT9727_3494 gi|49478361|ref|YP_037814.1| sensory box/GGDEF family [B... BLink CDD UniProt Pfam
BT9727_4983 gi|49481140|ref|YP_039292.1| sensory box/GGDEF family pr... BLink CDD UniProt Pfam
BT9727_5032 gi|49478974|ref|YP_039341.1| conserved hypothetical prot... BLink CDD UniProt Pfam
Carboxydothermus hydrogenoformans Z-2901
GGDEF only
CHY_0137 gi|78044420|ref|YP_359009.1| CBS/GGDEF domain protein [Car... BLink CDD UniProt Pfam
CHY_0140 gi|78042726|ref|YP_359012.1| GGDEF domain protein [Carboxy... BLink CDD UniProt Pfam
CHY_0705 gi|78043307|ref|YP_359559.1| GGDEF domain protein [Carboxy... BLink CDD UniProt Pfam
CHY_0880 gi|78043169|ref|YP_359730.1| response regulator/sensory bo... BLink CDD UniProt Pfam
CHY_0949 gi|78044859|ref|YP_359796.1| GGDEF domain protein [Carboxy... BLink CDD UniProt Pfam
CHY_1858 gi|78044643|ref|YP_360678.1| GGDEF domain protein [Carboxy... BLink CDD UniProt Pfam
CHY_1875 gi|78044830|ref|YP_360695.1| sensory box protein [Carboxyd... BLink CDD UniProt Pfam
CHY_2028 gi|78042857|ref|YP_360847.1| GGDEF/GAF/HDIG domain protein... BLink CDD UniProt Pfam
CHY_2195 gi|78043243|ref|YP_361008.1| sensory box protein [Carboxyd... BLink CDD UniProt Pfam
CHY_2467 gi|78043645|ref|YP_361261.1| GGDEF domain protein [Carboxy... BLink CDD UniProt Pfam
GGDEF-EAL
CHY_1906 gi|78044640|ref|YP_360725.1| sensory box/GGDEF domain/EAL ... BLink CDD UniProt Pfam
Clostridium acetobutylicum ATCC 824
GGDEF only
CAC0636 gi|15893924|ref|NP_347273.1| Signal transduction protein c... BLink CDD UniProt Pfam
CAC0818 gi|15894105|ref|NP_347454.1| Diguanylate cyclase/phosphodi... BLink CDD UniProt Pfam
CAC1566 gi|15894844|ref|NP_348193.1| Diguanylate cyclase/phosphodi... BLink CDD UniProt Pfam
CAC1568 gi|15894846|ref|NP_348195.1| Diguanylate cyclase/phosphodi... BLink CDD UniProt Pfam
CAC2587 gi|15895847|ref|NP_349196.1| GGDEF domain containing prote... BLink CDD UniProt Pfam
CAC2623 gi|15895881|ref|NP_349230.1| Possible sensorory transducti... BLink CDD UniProt Pfam
CAC3544 gi|15896780|ref|NP_350129.1| Membrane associated GGDEF dom... BLink CDD UniProt Pfam
*CAC2577 gi|15895837|ref|NP_349186.1| GGDEF domain containing prote... BLink CDD UniProt Pfam
*CAC3718 gi|15896949|ref|NP_350298.1| Exopolyphosphatase-like domai... BLink CDD UniProt Pfam
GGDEF-EAL
CAC0631 gi|15893919|ref|NP_347268.1| Signal transduction protein c... BLink CDD UniProt Pfam
CAC2702 gi|15895959|ref|NP_349308.1| Possible signal transduction ... BLink CDD UniProt Pfam
CAC3019 gi|15896271|ref|NP_349620.1| Sensory transduction protein ... BLink CDD UniProt Pfam
Clostridium difficile 630
GGDEF only
CD0537 gi|126698116|ref|YP_001087013.1| putative chemosensory pro... BLink CDD UniProt Pfam
CD0583 gi|126698161|ref|YP_001087058.1| putative signaling protei... BLink CDD UniProt Pfam
CD0584 gi|126698162|ref|YP_001087059.1| putative signaling protei... BLink CDD UniProt Pfam
CD0707 gi|126698286|ref|YP_001087183.1| putative signaling protei... BLink CDD UniProt Pfam
CD0997 gi|126698581|ref|YP_001087478.1| putative signaling protei... BLink CDD UniProt Pfam
CD1015 gi|126698599|ref|YP_001087496.1| putative signaling protei... BLink CDD UniProt Pfam
CD1028 gi|126698612|ref|YP_001087509.1| putative signaling protei... BLink CDD UniProt Pfam
CD1185 gi|126698781|ref|YP_001087678.1| putative signaling protei... BLink CDD UniProt Pfam
CD1419 gi|126699024|ref|YP_001087921.1| putative signaling protei... BLink CDD UniProt Pfam
CD1420 gi|126699025|ref|YP_001087922.1| putative signaling protei... BLink CDD UniProt Pfam
CD1841 gi|126699450|ref|YP_001088347.1| putative signaling protei... BLink CDD UniProt Pfam
CD2244 gi|126699861|ref|YP_001088758.1| putative signaling protei... BLink CDD UniProt Pfam
CD2384 gi|126699999|ref|YP_001088896.1| putative signaling protei... BLink CDD UniProt Pfam
CD2385 gi|126700000|ref|YP_001088897.1| putative signaling protei... BLink CDD UniProt Pfam
CD2887 gi|126700503|ref|YP_001089400.1| putative signaling protei... BLink CDD UniProt Pfam
CD3365 gi|126700985|ref|YP_001089882.1| putative signaling protei... BLink CDD UniProt Pfam
CD3625 gi|126701251|ref|YP_001090148.1| putative signaling protei... BLink CDD UniProt Pfam
CD2754 gi|126700370|ref|YP_001089267.1| putative signaling protei... BLink CDD UniProt Pfam
*CD3659 gi|126701286|ref|YP_001090183.1| putative RNA/single-stran... BLink CDD UniProt Pfam
GGDEF-EAL
CD0204 gi|126697775|ref|YP_001086672.1| putative signaling protei... BLink CDD UniProt Pfam
CD0522 gi|126698103|ref|YP_001087000.1| putative signaling protei... BLink CDD UniProt Pfam
CD0748 gi|126698328|ref|YP_001087225.1| putative signaling protei... BLink CDD UniProt Pfam
CD0757 gi|126698337|ref|YP_001087234.1| putative signaling protei... BLink CDD UniProt Pfam
CD0811 gi|126698391|ref|YP_001087288.1| putative signaling protei... BLink CDD UniProt Pfam
CD1421 gi|126699026|ref|YP_001087923.1| putative signaling protei... BLink CDD UniProt Pfam
CD1476 gi|126699080|ref|YP_001087977.1| putative signaling protei... BLink CDD UniProt Pfam
CD1515 gi|126699119|ref|YP_001088016.1| putative signaling protei... BLink CDD UniProt Pfam
CD1538 gi|126699142|ref|YP_001088039.1| putative signaling protei... BLink CDD UniProt Pfam
CD1616 gi|126699220|ref|YP_001088117.1| putative signaling protei... BLink CDD UniProt Pfam
CD1651 gi|126699255|ref|YP_001088152.1| putative signaling protei... BLink CDD UniProt Pfam
CD1840 gi|126699449|ref|YP_001088346.1| putative signaling protei... BLink CDD UniProt Pfam
CD2134 gi|126699750|ref|YP_001088647.1| putative signaling protei... BLink CDD UniProt Pfam
CD2663 gi|126700277|ref|YP_001089174.1| putative signaling protei... BLink CDD UniProt Pfam
CD2753 gi|126700369|ref|YP_001089266.1| putative signaling protei... BLink CDD UniProt Pfam
CD2760 gi|126700376|ref|YP_001089273.1| putative signaling protei... BLink CDD UniProt Pfam
CD2873 gi|126700489|ref|YP_001089386.1| putative signaling protei... BLink CDD UniProt Pfam
CD2965 gi|126700585|ref|YP_001089482.1| putative signaling protei... BLink CDD UniProt Pfam
Clostridium novyi NT
GGDEF only
NT01CX_0237 gi|118443867|ref|YP_878741.1| GGDEF domain protein, putat... BLink CDD UniProt Pfam
NT01CX_0952 gi|118444357|ref|YP_877049.1| chemotaxis response regulat... BLink CDD UniProt Pfam
NT01CX_1361 gi|118443736|ref|YP_877444.1| signal transduction protein... BLink CDD UniProt Pfam
NT01CX_2392 gi|118443169|ref|YP_878465.1| Diguanylate cyclase/phospho... BLink CDD UniProt Pfam
GGDEF-EAL
NT01CX_0985 gi|118443995|ref|YP_877082.1| nitrogen fixation positive ... BLink CDD UniProt Pfam
NT01CX_2347 gi|118443039|ref|YP_878420.1| Diguanylate cyclase/phospho... BLink CDD UniProt Pfam
NT01CX_2348 gi|118443481|ref|YP_878421.1| sensory box/GGDEF family pr... BLink CDD UniProt Pfam
Clostridium perfringens str. 13
CPE0245 gi|18309227|ref|NP_561161.1| hypothetical protein CPE0245 ... BLink CDD UniProt Pfam
CPE0804 gi|18309786|ref|NP_561720.1| hypothetical protein CPE0804 ... BLink CDD UniProt Pfam
CPE0965 gi|18309947|ref|NP_561881.1| probable sensory box/GGDEF fa... BLink CDD UniProt Pfam
CPE1007 gi|18309989|ref|NP_561923.1| hypothetical protein CPE1007 ... BLink CDD UniProt Pfam
CPE1560 gi|18310542|ref|NP_562476.1| hypothetical protein CPE1560 ... BLink CDD UniProt Pfam
CPE1788 gi|18310770|ref|NP_562704.1| hypothetical protein CPE1788 ... BLink CDD UniProt Pfam
*CPE2637 gi|18311619|ref|NP_563553.1| hypothetical protein CPE2637 ... BLink CDD UniProt Pfam
Clostridium tetani E88
CTC00705 gi|28210427|ref|NP_781371.1| diguanylate cyclase/phosphodi... BLink CDD UniProt Pfam
CTC00836 gi|28210553|ref|NP_781497.1| hypothetical protein CTC00836... BLink CDD UniProt Pfam
CTC01764 gi|28211414|ref|NP_782358.1| possible signalling protein ... BLink CDD UniProt Pfam
CTC01784 gi|28211430|ref|NP_782374.1| putative sensor protein [Clos... BLink CDD UniProt Pfam
CTC01837 gi|28211476|ref|NP_782420.1| signaling protein [Clostridiu... BLink CDD UniProt Pfam
CTC01983 gi|28211608|ref|NP_782552.1| response regulator protein [C... BLink CDD UniProt Pfam
*CTC00111 gi|28209882|ref|NP_780826.1| MGPA protein [Clostridium tet... BLink CDD UniProt Pfam
Desulfitobacterium hafniense Y51
GGDEF only
DSY0555 gi|89893301|ref|YP_516788.1| hypothetical protein DSY0555 ... BLink CDD UniProt Pfam
DSY0615 gi|89893361|ref|YP_516848.1| hypothetical protein DSY0615 ... BLink CDD UniProt Pfam
DSY0825 gi|89893571|ref|YP_517058.1| hypothetical protein DSY0825 ... BLink CDD UniProt Pfam
DSY1176 gi|89893922|ref|YP_517409.1| hypothetical protein DSY1176 ... BLink CDD UniProt Pfam
DSY1329 gi|89894075|ref|YP_517562.1| hypothetical protein DSY1329 ... BLink CDD UniProt Pfam
DSY1732 gi|89894478|ref|YP_517965.1| hypothetical protein DSY1732 ... BLink CDD UniProt Pfam
DSY2119 gi|89894865|ref|YP_518352.1| hypothetical protein DSY2119 ... BLink CDD UniProt Pfam
DSY2328 gi|89895074|ref|YP_518561.1| hypothetical protein DSY2328 ... BLink CDD UniProt Pfam
DSY3815 gi|89896561|ref|YP_520048.1| hypothetical protein DSY3815 ... BLink CDD UniProt Pfam
DSY3392 gi|89896138|ref|YP_519625.1| hypothetical protein DSY3392 ... BLink CDD UniProt Pfam
DSY3384 gi|89896130|ref|YP_519617.1| hypothetical protein DSY3384 ... BLink CDD UniProt Pfam
DSY3628 gi|89896374|ref|YP_519861.1| hypothetical protein DSY3628 ... BLink CDD UniProt Pfam
DSY3660 gi|89896406|ref|YP_519893.1| hypothetical protein DSY3660 ... BLink CDD UniProt Pfam
DSY4521 gi|89897267|ref|YP_520754.1| hypothetical protein DSY4521 ... BLink CDD UniProt Pfam
DSY4797 gi|89897543|ref|YP_521030.1| hypothetical protein DSY4797 ... BLink CDD UniProt Pfam
GGDEF-EAL
DSY1201 gi|89893947|ref|YP_517434.1| hypothetical protein DSY1201 ... BLink CDD UniProt Pfam
DSY1224 gi|89893970|ref|YP_517457.1| hypothetical protein DSY1224 ... BLink CDD UniProt Pfam
DSY3381 gi|89896127|ref|YP_519614.1| hypothetical protein DSY3381 ... BLink CDD UniProt Pfam
DSY4122 gi|89896868|ref|YP_520355.1| hypothetical protein DSY4122 ... BLink CDD UniProt Pfam
GGDEF-HD-GYP
DSY3403 gi|89896149|ref|YP_519636.1| HD-GYP domain protein [Desulf... BLink CDD UniProt Pfam
Enterococcus faecalis V583
EF0011 gi|29374671|ref|NP_813823.1| DHH family protein [Enterococ... BLink CDD UniProt Pfam
Geobacillus kaustophilus HTA426
GGDEF only
GK1039 gi|56419574|ref|YP_146892.1| hypothetical protein GK1039 ... BLink CDD UniProt Pfam
GK1361 gi|56419896|ref|YP_147214.1| hypothetical protein GK1361 ... BLink CDD UniProt Pfam
GK1841 gi|56420376|ref|YP_147694.1| hypothetical protein GK1841 ... BLink CDD UniProt Pfam
GK2801 gi|56421336|ref|YP_148654.1| two-component sensor histidin... BLink CDD UniProt Pfam
GK3466 gi|56422001|ref|YP_149319.1| hypothetical protein GK3466 ... BLink CDD UniProt Pfam
*GK3478 gi|56422013|ref|YP_149331.1| hypothetical protein GK3478 ... BLink CDD UniProt Pfam
GGDEF-EAL
GK0401 gi|56418936|ref|YP_146254.1| hypothetical protein GK0401 ... BLink CDD UniProt Pfam
GK0698 gi|56419233|ref|YP_146551.1| hypothetical protein GK0698 ... BLink CDD UniProt Pfam
GK1463 gi|56419998|ref|YP_147316.1| hypothetical protein GK1463 ... BLink CDD UniProt Pfam
Lactobacillus acidophilus NCFM
LBA1413 gi|58337684|ref|YP_194269.1| regulator components [Lactoba... BLink CDD UniProt Pfam
Lactobacillus brevis ATCC 367
LVIS_0560 gi|116333211|ref|YP_794738.1| Signal transduction diguanyl... BLink CDD UniProt Pfam
LVIS_1299 gi|116333908|ref|YP_795435.1| Signal transduction diguanyl... BLink CDD UniProt Pfam
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842
Ldb0375 gi|104773529|ref|YP_618509.1| Hypothetical membrane protei... BLink CDD UniProt Pfam
Ldb0667 gi|104773757|ref|YP_618737.1| hypothetical protein Ldb0667... BLink CDD UniProt Pfam
Ldb0981 gi|104773989|ref|YP_618969.1| Putative signal transduction... BLink CDD UniProt Pfam
Lactobacillus johnsonii NCC 533
*LJ0010 gi|42518095|ref|NP_964025.1| hypothetical protein LJ0010 ... BLink CDD UniProt Pfam
Lactobacillus plantarum WCFS1
lp_2524 gi|28379068|ref|NP_785960.1| protein containing diguanylat... BLink CDD UniProt Pfam
lp_2929 gi|28379379|ref|NP_786271.1| protein containing diguanylat... BLink CDD UniProt Pfam
lp_3021 gi|28379449|ref|NP_786341.1| protein containing diguanylat... BLink CDD UniProt Pfam
*lp_0012 gi|28376984|ref|NP_783876.1| exopolyphosphatase-related pr... BLink CDD UniProt Pfam
Lactobacillus salivarius subsp. salivarius UCC118
LSL_1024 gi|90961999|ref|YP_535915.1| Response regulator [Lactobaci... BLink CDD UniProt Pfam
Lactococcus lactis subsp. lactis Il1403
*LL0744 gi|15672726|ref|NP_266900.1| hypothetical protein L151062 ... BLink CDD UniProt Pfam
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
LEUM_1556 gi|116618650|ref|YP_819021.1| Signal transduction diguanyl... BLink CDD UniProt Pfam
Listeria innocua Clip11262
lin2025 gi|16801091|ref|NP_471359.1| hypothetical protein lin2025 ... BLink CDD UniProt Pfam
lin2026 gi|16801092|ref|NP_471360.1| hypothetical protein lin2026 ... BLink CDD UniProt Pfam
lin2277 gi|16801341|ref|NP_471609.1| hypothetical protein lin2277 ... BLink CDD UniProt Pfam
*lin0045 gi|16799124|ref|NP_469392.1| hypothetical protein lin0045 ... BLink CDD UniProt Pfam
*lin0535 gi|16799610|ref|NP_469878.1| hypothetical protein lin0535 ... BLink CDD UniProt Pfam
Listeria monocytogenes EGD-e
lmo1911 gi|16803950|ref|NP_465435.1| hypothetical protein lmo1911 ... BLink CDD UniProt Pfam
lmo1912 gi|16803951|ref|NP_465436.1| hypothetical protein lmo1912 ... BLink CDD UniProt Pfam
lmo2174 gi|16804213|ref|NP_465698.1| hypothetical protein lmo2174 ... BLink CDD UniProt Pfam
*lmo0052 gi|16802100|ref|NP_463585.1| hypothetical protein lmo0052 ... BLink CDD UniProt Pfam
*lmo0531 gi|16802574|ref|NP_464059.1| hypothetical protein lmo0531 ... BLink CDD UniProt Pfam
Listeria welshimeri serovar 6b str. SLCC5334
lwe0491 gi|116871911|ref|YP_848692.1| GGDEF motif membrane protein... BLink CDD UniProt Pfam
lwe1930 gi|116873346|ref|YP_850127.1| GGDEF domain protein [Lister... BLink CDD UniProt Pfam
lwe1931 gi|116873347|ref|YP_850128.1| GGDEF domain protein [Lister... BLink CDD UniProt Pfam
lwe2192 gi|116873608|ref|YP_850389.1| GGDEF domain protein [Lister... BLink CDD UniProt Pfam
*lwe0043 gi|116871465|ref|YP_848246.1| DHH subfamily 1 protein [Lis... BLink CDD UniProt Pfam
Moorella thermoacetica ATCC 39073
Moth_0223 gi|83589092|ref|YP_429101.1| diguanylate cyclase (GGDEF do... BLink CDD UniProt Pfam
Moth_0521 gi|83589385|ref|YP_429394.1| diguanylate cyclase (GGDEF do... BLink CDD UniProt Pfam
Moth_0689 gi|83589543|ref|YP_429552.1| putative PAS/PAC sensor prote... BLink CDD UniProt Pfam
Moth_0692 gi|83589545|ref|YP_429554.1| response regulator receiver d... BLink CDD UniProt Pfam
Moth_1471 gi|83590315|ref|YP_430324.1| diguanylate cyclase (GGDEF do... BLink CDD UniProt Pfam
Moth_2149 gi|83590972|ref|YP_430981.1| diguanylate cyclase (GGDEF do... BLink CDD UniProt Pfam
Moth_2151 gi|83590974|ref|YP_430983.1| diguanylate cyclase (GGDEF do... BLink CDD UniProt Pfam
Moth_2152 gi|83590975|ref|YP_430984.1| response regulator receiver d... BLink CDD UniProt Pfam
*Moth_2148 gi|83590971|ref|YP_430980.1| diguanylate cyclase (GGDEF do... BLink CDD UniProt Pfam
Mycoplasma hyopneumoniae 232
*mhp666 gi|54020647|ref|YP_116174.1| hypothetical protein mhp666 ... BLink CDD UniProt Pfam
Mycoplasma mobile 163K
*MMOB1730 gi|47459008|ref|YP_015870.1| predicted signaling protein ... BLink CDD UniProt Pfam
Mycoplasma pulmonis UAB CTIP
*MYPU_5170 gi|15828988|ref|NP_326348.1| hypothetical protein MYPU_51 ... BLink CDD UniProt Pfam
Mycoplasma synoviae 53
*MS53_0427 gi|71894442|ref|YP_278550.1| putative DHH subfamily 1 pro ... BLink CDD UniProt Pfam
Oceanobacillus iheyensis HTE831
OB1359 gi|23098814|ref|NP_692280.1| truncated nitrogen fixation p... BLink CDD UniProt Pfam
OB2204 gi|23099659|ref|NP_693125.1| hypothetical protein OB2204 ... BLink CDD UniProt Pfam
OB3095 gi|23100550|ref|NP_694017.1| hypothetical protein OB3095 ... BLink CDD UniProt Pfam
*OB3462 gi|23100917|ref|NP_694384.1| hypothetical protein OB3462 ... BLink CDD UniProt Pfam
Oenococcus oeni PSU-1
OEOE_1517 gi|116491495|ref|YP_811039.1| Signal transduction diguanyl... BLink CDD UniProt Pfam
Pediococcus pentosaceus ATCC 25745
PEPE_1790 gi|116493518|ref|YP_805253.1| Signal transduction diguanyl... BLink CDD UniProt Pfam
Onion yellows phytoplasma OY-M
*PAM012 gi|39938498|ref|NP_950264.1| exopolyphosphatase-related pr... BLink CDD UniProt Pfam
Staphylococcus aureus subsp. aureus N315
SA0701 gi|15926423|ref|NP_373956.1| hypothetical protein SA0701 ... BLink CDD UniProt Pfam
*SA0013 gi|15925719|ref|NP_373252.1| hypothetical protein SA0013 ... BLink CDD UniProt Pfam
Staphylococcus epidermidis ATCC 12228
SE0528 gi|27467446|ref|NP_764083.1| hypothetical protein SE0528 ... BLink CDD UniProt Pfam
*SE0013 gi|27466931|ref|NP_763568.1| hypothetical protein SE0013 ... BLink CDD UniProt Pfam
Staphylococcus haemolyticus JCSC1435
SH2145 gi|70727144|ref|YP_254060.1| hypothetical protein SH2145 ... BLink CDD UniProt Pfam
*SH0013 gi|70725014|ref|YP_251928.1| hypothetical protein SH0013 ... BLink CDD UniProt Pfam
Streptococcus agalactiae 2603V/R
*SAG2141 gi|22538275|ref|NP_689126.1| DHH family protein [Streptoco... BLink CDD UniProt Pfam
Streptococcus mutans UA159
*SMU.2140c gi|24380470|ref|NP_722425.1| hypothetical protein SMU.2140... BLink CDD UniProt Pfam
Streptococcus pneumoniae TIGR4
*SP2205 gi|15902012|ref|NP_346616.1| DHH subfamily 1 protein [Stre... BLink CDD UniProt Pfam
Streptococcus pyogenes M1 GAS
*SPy2184 gi|15675919|ref|NP_270093.1| hypothetical protein SPy2184 ... BLink CDD UniProt Pfam
Streptococcus thermophilus CNRZ1066
*str2001 gi|55823885|ref|YP_142326.1| hypothetical protein str2001 ... BLink CDD UniProt Pfam
Symbiobacterium thermophilum IAM 14863
GGDEF only
STH566 gi|51891704|ref|YP_074395.1| putative sensory box/GGDEF do... BLink CDD UniProt Pfam
STH1074 gi|51892212|ref|YP_074903.1| transcriptional regulator, C ... BLink CDD UniProt Pfam
STH1169 gi|51892307|ref|YP_074998.1| transcriptional regulator [S ... BLink CDD UniProt Pfam
STH2135 gi|51893273|ref|YP_075964.1| hypothetical protein STH2135 ... BLink CDD UniProt Pfam
STH2889 gi|51894025|ref|YP_076716.1| hypothetical protein STH2889 ... BLink CDD UniProt Pfam
STH3108 gi|51894243|ref|YP_076934.1| hypothetical protein STH3108 ... BLink CDD UniProt Pfam
GGDEF-EAL
STH727 gi|51891865|ref|YP_074556.1| hypothetical protein STH727 ... BLink CDD UniProt Pfam
STH1699 gi|51892837|ref|YP_075528.1| hypothetical protein STH1699 ... BLink CDD UniProt Pfam
STH2848 gi|51893986|ref|YP_076677.1| hypothetical protein STH2848 ... BLink CDD UniProt Pfam
Syntrophomonas wolfei subsp. wolfei str. Goettingen
GGDEF only
Swol_0011 gi|114565587|ref|YP_752741.1| putative PAS/PAC sensor prot... BLink CDD UniProt Pfam
Swol_0336 gi|114565894|ref|YP_753048.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Swol_0600 gi|114566146|ref|YP_753300.1| response regulator receiver ... BLink CDD UniProt Pfam
Swol_1469 gi|114566991|ref|YP_754145.1| HD-GYP domain-like protein [... BLink CDD UniProt Pfam
Swol_1622 gi|114567140|ref|YP_754294.1| response regulator receiver ... BLink CDD UniProt Pfam
Swol_2092 gi|114567601|ref|YP_754755.1| response regulator receiver ... BLink CDD UniProt Pfam
Swol_2435 gi|114567941|ref|YP_755095.1| PAS/PAC domain-like protein ... BLink CDD UniProt Pfam
Swol_2483 gi|114567989|ref|YP_755143.1| putative PAS/PAC sensor prot... BLink CDD UniProt Pfam
Thermoanaerobacter tengcongensis MB4
TTE1052 gi|20807527|ref|NP_622698.1| Diguanylate cyclase/phosphodi... BLink CDD UniProt Pfam
TTE1081 gi|20807551|ref|NP_622722.1| Diguanylate cyclase/phosphodi... BLink CDD UniProt Pfam
TTE1100 gi|20807566|ref|NP_622737.1| Diguanylate cyclase/phosphodi... BLink CDD UniProt Pfam
TTE1101 gi|20807567|ref|NP_622738.1| CheY-like receiver domains [T... BLink CDD UniProt Pfam
TTE1717 gi|20808142|ref|NP_623313.1| Response regulators consistin... BLink CDD UniProt Pfam
TTE2335 gi|20808701|ref|NP_623872.1| Diguanylate cyclase/phosphodi... BLink CDD UniProt Pfam
*TTE2776 gi|20809105|ref|NP_624276.1| Exopolyphosphatase-related pr... BLink CDD UniProt Pfam
Please send your corrections, questions and comments to Michael Galperin