Diguanylate cyclase (GGDEF) domains in Actinobacteria
Actinobacteria
. Acidothermus cellulolyticus 11B ........................ 13 hits
. Arthrobacter aurescens TC1 ............................. 6 hits
. Arthrobacter sp. FB24 .................................. 5 hits
. Corynebacterium glutamicum ATCC 13032 .................. 1 hit
. Frankia alni ACN14a .................................... 16 hits
. Frankia sp. CcI3 ....................................... 10 hits
. Mycobacterium avium subsp. paratuberculosis str. k10 ... 4 hits*
. Mycobacterium bovis AF2122/97 .......................... 1 hit
. Mycobacterium leprae TN ................................ 3 hits
. Mycobacterium smegmatis str. MC2 155 ................... 1 hit
. Mycobacterium sp. KMS .................................. 10 hits
. Mycobacterium sp. MCS .................................. 10 hits
. Mycobacterium tuberculosis H37Rv ....................... 1 hit
. Mycobacterium vanbaalenii PYR-1 ........................ 14 hits
. Nocardia farcinica IFM 10152 ........................... 8 hits
. Nocardioides sp. JS614 ................................. 3 hits
. Rhodococcus sp. RHA1 ................................... 7 hits
. Rubrobacter xylanophilus DSM 9941 ...................... 6 hits
. Streptomyces avermitilis MA-4680 ....................... 7 hits*
. Streptomyces coelicolor A3(2) .......................... 7 hits*
. Thermobifida fusca YX .................................. 3 hits
Actinobacteria
Acidothermus cellulolyticus 11B
GGDEF only
Acel_0096 gi|117927307|ref|YP_871858.1| diguanylate cyclase [Acidoth... BLink CDD UniProt Pfam
Acel_0165 gi|117927375|ref|YP_871926.1| diguanylate cyclase [Acidoth... BLink CDD UniProt Pfam
Acel_0620 gi|117927828|ref|YP_872379.1| diguanylate cyclase [Acidoth... BLink CDD UniProt Pfam
Acel_0932 gi|117928140|ref|YP_872691.1| diguanylate cyclase [Acidoth... BLink CDD UniProt Pfam
Acel_1161 gi|117928368|ref|YP_872919.1| diguanylate cyclase [Acidoth... BLink CDD UniProt Pfam
Acel_1612 gi|117928819|ref|YP_873370.1| diguanylate cyclase [Acidoth... BLink CDD UniProt Pfam
GGDEF-EAL
Acel_0823 gi|117928031|ref|YP_872582.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Acel_1420 gi|117928627|ref|YP_873178.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Acel_1434 gi|117928641|ref|YP_873192.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Acel_1481 gi|117928688|ref|YP_873239.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Acel_1662 gi|117928869|ref|YP_873420.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Acel_1740 gi|117928947|ref|YP_873498.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Acel_1905 gi|117929112|ref|YP_873663.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Arthrobacter aurescens TC1
GGDEF only
AAur_0626 gi|119961555|ref|YP_946432.1| putative GGDEF domain protei... BLink CDD UniProt Pfam
AAur_3234 gi|119961921|ref|YP_948931.1| response regulator/GGDEF dom... BLink CDD UniProt Pfam
AAur_4053 gi|119962393|ref|YP_949721.1| putative GGDEF domain protei... BLink CDD UniProt Pfam
GGDEF-EAL
AAur_0628 gi|119962652|ref|YP_946434.1| putative GGDEF domain/EAL do... BLink CDD UniProt Pfam
AAur_3242 gi|119964390|ref|YP_948938.1| putative GGDEF domain/EAL do... BLink CDD UniProt Pfam
AAur_pTC20236 gi|119952737|ref|YP_950384.1| Sensory Box Protein [Arth... BLink CDD UniProt Pfam
Arthrobacter sp. FB24
GGDEF only
Arth_0476 gi|116669042|ref|YP_829975.1| diguanylate cyclase [Arthrob... BLink CDD UniProt Pfam
GGDEF-EAL
Arth_0113 gi|116668681|ref|YP_829614.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Arth_1068 gi|116669629|ref|YP_830562.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Arth_1783 gi|116670340|ref|YP_831273.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Arth_3769 gi|116672311|ref|YP_833244.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Corynebacterium glutamicum ATCC 13032
Cgl1038 gi|19552261|ref|NP_600263.1| GGDEF family protein [Coryneb... BLink CDD UniProt Pfam
Frankia alni ACN14a
GGDEF only
FRAAL0771 gi|111220249|ref|YP_711043.1| putative signaling protein w... BLink CDD UniProt Pfam
FRAAL2297 gi|111221728|ref|YP_712522.1| hypothetical protein; putati... BLink CDD UniProt Pfam
FRAAL2490 gi|111221917|ref|YP_712711.1| putative sensor protein [Fra... BLink CDD UniProt Pfam
FRAAL3242 gi|111222659|ref|YP_713453.1| putative sensor histidine ki... BLink CDD UniProt Pfam
FRAAL3590 gi|111223001|ref|YP_713795.1| putative sensory box/GGDEF d... BLink CDD UniProt Pfam
FRAAL4022 gi|111223426|ref|YP_714220.1| Putative two component senso... BLink CDD UniProt Pfam
FRAAL5289 gi|111224660|ref|YP_715454.1| hypothetical protein FRAAL52... BLink CDD UniProt Pfam
FRAAL0898 gi|111220367|ref|YP_711161.1| hypothetical protein FRAAL08... BLink CDD UniProt Pfam
GGDEF-EAL
FRAAL1639 gi|111221089|ref|YP_711883.1| Putative sensory box/GGDEF f... BLink CDD UniProt Pfam
FRAAL1954 gi|111221392|ref|YP_712186.1| hypothetical protein; putati... BLink CDD UniProt Pfam
FRAAL2035 gi|111221471|ref|YP_712265.1| hypothetical protein FRAAL20... BLink CDD UniProt Pfam
FRAAL4612 gi|111224004|ref|YP_714798.1| hypothetical protein; putati... BLink CDD UniProt Pfam
FRAAL5548 gi|111224913|ref|YP_715707.1| hypothetical protein; putati... BLink CDD UniProt Pfam
FRAAL5824 gi|111225181|ref|YP_715975.1| Hypothetical protein; putati... BLink CDD UniProt Pfam
FRAAL5972 gi|111225318|ref|YP_716112.1| hypothetical protein FRAAL59... BLink CDD UniProt Pfam
GGDEF-HD-GYP
FRAAL6432 gi|111225771|ref|YP_716565.1| Hypothetical protein; putati... BLink CDD UniProt Pfam
Frankia sp. CcI3
GGDEF only
Francci3_0368 gi|86739084|ref|YP_479484.1| diguanylate cyclase (GGDEF... BLink CDD UniProt Pfam
Francci3_1491 gi|86740196|ref|YP_480596.1| diguanylate cyclase (GGDEF... BLink CDD UniProt Pfam
Francci3_1613 gi|86740318|ref|YP_480718.1| diguanylate cyclase (GGDEF... BLink CDD UniProt Pfam
Francci3_2523 gi|86741218|ref|YP_481618.1| diguanylate cyclase (GGDEF... BLink CDD UniProt Pfam
Francci3_4063 gi|86742742|ref|YP_483142.1| diguanylate cyclase (GGDEF... BLink CDD UniProt Pfam
*Francci3_0413gi|86739129|ref|YP_479529.1| conserved hypothetical pro... BLink CDD UniProt Pfam
GGDEF-EAL
Francci3_0377 gi|86739093|ref|YP_479493.1| diguanylate cyclase/phosph... BLink CDD UniProt Pfam
Francci3_1004 gi|86739716|ref|YP_480116.1| diguanylate cyclase/phosph... BLink CDD UniProt Pfam
Francci3_1288 gi|86739994|ref|YP_480394.1| diguanylate cyclase/phosph... BLink CDD UniProt Pfam
Francci3_3617 gi|86742298|ref|YP_482698.1| diguanylate cyclase/phosph... BLink CDD UniProt Pfam
Francci3_3740 gi|86742420|ref|YP_482820.1| diguanylate cyclase/phosph... BLink CDD UniProt Pfam
*Francci3_1622gi|86740327|ref|YP_480727.1| diguanylate cyclase/phosph... BLink CDD UniProt Pfam
Mycobacterium avium subsp. paratuberculosis str. k10
GGDEF only
MAP1683c gi|41407781|ref|NP_960617.1| hypothetical protein MAP1683c... BLink CDD UniProt Pfam
MAP3647c gi|41409745|ref|NP_962581.1| hypothetical protein MAP3647c... BLink CDD UniProt Pfam
GGDEF-EAL
MAP0949 gi|41407047|ref|NP_959883.1| hypothetical protein MAP0949 ... BLink CDD UniProt Pfam
MAP2512 gi|41408610|ref|NP_961446.1| hypothetical protein MAP2512 ... BLink CDD UniProt Pfam
*MAP1346c gi|41407444|ref|NP_960280.1| hypothetical protein MAP1346c... BLink CDD UniProt Pfam
*MAP1347c gi|41407445|ref|NP_960281.1| hypothetical protein MAP1347c... BLink CDD UniProt Pfam
Mycobacterium bovis AF2122/97
Mb1389c gi|31792550|ref|NP_855043.1| CONSERVED HYPOTHETICAL PROTEI... BLink CDD UniProt Pfam
Mycobacterium leprae TN
GGDEF only
ML0397 gi|15827122|ref|NP_301385.1| putative transporter protein ... BLink CDD UniProt Pfam
ML1419 gi|15827746|ref|NP_302009.1| possible regulatory protein ... BLink CDD UniProt Pfam
GGDEF-EAL
ML1750 gi|15827936|ref|NP_302199.1| hypothetical protein ML1750 ... BLink CDD UniProt Pfam
Mycobacterium smegmatis str. MC2 155
MSMEG_2196 gi|118467440|ref|YP_886551.1| sensory box/response regulat... BLink CDD UniProt Pfam
Mycobacterium sp. KMS
GGDEF only
Mkms_0366 gi|119866421|ref|YP_936373.1| diguanylate cyclase [Mycobac... BLink CDD UniProt Pfam
Mkms_1139 gi|119867190|ref|YP_937142.1| GGDEF [Mycobacterium sp. JL ... BLink CDD UniProt Pfam
Mkms_4529 gi|119870558|ref|YP_940510.1| diguanylate cyclase [Mycobac... BLink CDD UniProt Pfam
Mkms_5298 gi|119871324|ref|YP_941276.1| diguanylate cyclase [Mycobac... BLink CDD UniProt Pfam
Mkms_5359 gi|119871383|ref|YP_941335.1| diguanylate cyclase [Mycobac... BLink CDD UniProt Pfam
GGDEF-EAL
Mkms_1640 gi|119867685|ref|YP_937637.1| GGDEF:EAL:GAF [Mycobacteriu ... BLink CDD UniProt Pfam
Mkms_1795 gi|119867834|ref|YP_937786.1| GGDEF [Mycobacterium sp. JL ... BLink CDD UniProt Pfam
Mkms_2261 gi|119868297|ref|YP_938249.1| GGDEF:EAL [Mycobacterium sp ... BLink CDD UniProt Pfam
Mkms_4404 gi|119870433|ref|YP_940385.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Mkms_4833 gi|119870861|ref|YP_940813.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Mycobacterium sp. MCS
GGDEF only
Mmcs_0356 gi|108797336|ref|YP_637533.1| diguanylate cyclase [Mycobac... BLink CDD UniProt Pfam
Mmcs_1122 gi|108798094|ref|YP_638291.1| diguanylate cyclase [Mycobac... BLink CDD UniProt Pfam
Mmcs_4318 gi|108801282|ref|YP_641479.1| GGDEF [Mycobacterium sp. JL ... BLink CDD UniProt Pfam
Mmcs_4442 gi|108801405|ref|YP_641602.1| diguanylate cyclase [Mycobac... BLink CDD UniProt Pfam
Mmcs_5210 gi|108802171|ref|YP_642368.1| GGDEF [Mycobacterium sp. JL ... BLink CDD UniProt Pfam
Mmcs_5270 gi|108802230|ref|YP_642427.1| diguanylate cyclase [Mycobac... BLink CDD UniProt Pfam
GGDEF-EAL
Mmcs_1615 gi|108798585|ref|YP_638782.1| GGDEF:EAL [Mycobacterium sp ... BLink CDD UniProt Pfam
Mmcs_1748 gi|108798716|ref|YP_638913.1| GGDEF:EAL:GAF [Mycobacteriu ... BLink CDD UniProt Pfam
Mmcs_2215 gi|108799182|ref|YP_639379.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Mmcs_4747 gi|108801710|ref|YP_641907.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Mycobacterium tuberculosis H37Rv
Rv1354c gi|15608494|ref|NP_215870.1| hypothetical protein Rv1354c ... BLink CDD UniProt Pfam
Mycobacterium vanbaalenii PYR-1
GGDEF only
Mvan_0374 gi|120401399|ref|YP_951228.1| diguanylate cyclase [Mycobac... BLink CDD UniProt Pfam
Mvan_0679 gi|120401694|ref|YP_951523.1| diguanylate cyclase [Mycobac... BLink CDD UniProt Pfam
Mvan_0796 gi|120401811|ref|YP_951640.1| diguanylate cyclase [Mycobac... BLink CDD UniProt Pfam
Mvan_1193 gi|120402205|ref|YP_952034.1| diguanylate cyclase [Mycobac... BLink CDD UniProt Pfam
Mvan_1665 gi|120402671|ref|YP_952500.1| diguanylate cyclase [Mycobac... BLink CDD UniProt Pfam
Mvan_2109 gi|120403101|ref|YP_952930.1| diguanylate cyclase with PAS... BLink CDD UniProt Pfam
Mvan_2385 gi|120403376|ref|YP_953205.1| diguanylate cyclase [Mycobac... BLink CDD UniProt Pfam
Mvan_3629 gi|120404597|ref|YP_954426.1| diguanylate cyclase with PAS... BLink CDD UniProt Pfam
Mvan_4819 gi|120405769|ref|YP_955598.1| diguanylate cyclase [Mycobac... BLink CDD UniProt Pfam
Mvan_5593 gi|120406535|ref|YP_956364.1| diguanylate cyclase with PAS... BLink CDD UniProt Pfam
GGDEF-EAL
Mvan_1152 gi|120402164|ref|YP_951993.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Mvan_1918 gi|120402915|ref|YP_952744.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Mvan_1967 gi|120402963|ref|YP_952792.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Mvan_4640 gi|120405592|ref|YP_955421.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Nocardia farcinica IFM 10152
GGDEF only
nfa11350 gi|54023102|ref|YP_117344.1| hypothetical protein nfa11350... BLink CDD UniProt Pfam
nfa11570 gi|54023124|ref|YP_117366.1| hypothetical protein nfa11570... BLink CDD UniProt Pfam
nfa13290 gi|54023296|ref|YP_117538.1| hypothetical protein nfa13290... BLink CDD UniProt Pfam
nfa19070 gi|54023875|ref|YP_118117.1| hypothetical protein nfa19070... BLink CDD UniProt Pfam
nfa45060 gi|54026479|ref|YP_120721.1| hypothetical protein nfa45060... BLink CDD UniProt Pfam
pnf11150 gi|54027763|ref|YP_122004.1| hypothetical protein pnf11150... BLink CDD UniProt Pfam
GGDEF-EAL
nfa1410 gi|54022105|ref|YP_116347.1| hypothetical protein nfa1410 ... BLink CDD UniProt Pfam
nfa49160 gi|54026890|ref|YP_121132.1| hypothetical protein nfa49160... BLink CDD UniProt Pfam
Nocardioides sp. JS614
GGDEF only
Noca_1137 gi|119715375|ref|YP_922340.1| diguanylate cyclase [Nocardi... BLink CDD UniProt Pfam
GGDEF-EAL
Noca_1138 gi|119715376|ref|YP_922341.1| diguanylate cyclase [Nocardi... BLink CDD UniProt Pfam
Noca_1139 gi|119715377|ref|YP_922342.1| diguanylate cyclase [Nocardi... BLink CDD UniProt Pfam
Rhodococcus sp. RHA1
GGDEF only
RHA1_ro00693 gi|111017714|ref|YP_700686.1| hypothetical protein RHA1_... BLink CDD UniProt Pfam
RHA1_ro03917 gi|111020903|ref|YP_703875.1| possible GGDEF domain prot... BLink CDD UniProt Pfam
RHA1_ro04714 gi|111021686|ref|YP_704658.1| hypothetical protein RHA1_... BLink CDD UniProt Pfam
RHA1_ro08740 gi|111025522|ref|YP_707942.1| hypothetical protein RHA1_... BLink CDD UniProt Pfam
GGDEF-EAL
RHA1_ro00511 gi|111017533|ref|YP_700505.1| hypothetical protein RHA1_... BLink CDD UniProt Pfam
RHA1_ro05753 gi|111022717|ref|YP_705689.1| hypothetical protein RHA1_... BLink CDD UniProt Pfam
RHA1_ro05772 gi|111022736|ref|YP_705708.1| hypothetical protein RHA1_... BLink CDD UniProt Pfam
Rubrobacter xylanophilus DSM 9941
GGDEF only
Rxyl_1060 gi|108803901|ref|YP_643838.1| diguanylate cyclase [Rubroba... BLink CDD UniProt Pfam
GGDEF-EAL
Rxyl_0492 gi|108803341|ref|YP_643278.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Rxyl_1156 gi|108803997|ref|YP_643934.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Rxyl_1544 gi|108804381|ref|YP_644318.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Rxyl_2092 gi|108804911|ref|YP_644848.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Rxyl_2783 gi|108805572|ref|YP_645509.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Streptomyces avermitilis MA-4680
GGDEF only
SAV3326 gi|29606977|dbj|BAC71037.1| putative secreted protein [Str... BLink CDD UniProt Pfam
SAV3944 gi|29607599|dbj|BAC71656.1| hypothetical protein [Streptom... BLink CDD UniProt Pfam
SAV7515 gi|29611182|dbj|BAC75226.1| hypothetical protein [Streptom... BLink CDD UniProt Pfam
GGDEF-EAL
SAV2734 gi|29606383|dbj|BAC70445.1| putative integral membrane pho... BLink CDD UniProt Pfam
SAV2747 gi|29606396|dbj|BAC70458.1| putative phosphodiesterase [St... BLink CDD UniProt Pfam
SAV5237 gi|29608897|dbj|BAC72949.1| putative sensory box/GGDEF fam... BLink CDD UniProt Pfam
SAV7304 gi|29610971|dbj|BAC75015.1| hypothetical protein [Streptom... BLink CDD UniProt Pfam
*SAV6965 gi|29610630|dbj|BAC74676.1| hypothetical protein [Streptom... BLink CDD UniProt Pfam
Streptomyces coelicolor A3(2)
GGDEF only
SCO4281 gi|21222674|ref|NP_628453.1| hypothetical protein SCO4281 ... BLink CDD UniProt Pfam
SCO5345 gi|21223706|ref|NP_629485.1| hypothetical protein SCO5345 ... BLink CDD UniProt Pfam
SCP1.113 gi|21234109|ref|NP_639686.1| hypothetical protein SCP1.113... BLink CDD UniProt Pfam
*SCO4931 gi|21223305|ref|NP_629084.1| putative membrane protein [St... BLink CDD UniProt Pfam
*SCO1398 gi|21219902|ref|NP_625681.1| hypothetical protein SCO1398 ... BLink CDD UniProt Pfam
GGDEF-EAL
SCO0928 gi|21219447|ref|NP_625226.1| hypothetical protein SCO0928 ... BLink CDD UniProt Pfam
SCO2817 gi|21221267|ref|NP_627046.1| hypothetical protein SCO2817 ... BLink CDD UniProt Pfam
SCO5495 gi|21223851|ref|NP_629630.1| putative phosphodiesterase ... BLink CDD UniProt Pfam
SCO5511 gi|21223867|ref|NP_629646.1| putative membrane associated ... BLink CDD UniProt Pfam
Thermobifida fusca YX
GGDEF only
Tfu_2218 gi|72162617|ref|YP_290274.1| GGDEF [Thermobifida fusca YX]... BLink CDD UniProt Pfam
GGDEF-EAL
Tfu_0604 gi|72161008|ref|YP_288665.1| putative phosphodiesterase [T... BLink CDD UniProt Pfam
Tfu_0610 gi|72161014|ref|YP_288671.1| PAS:GGDEF [Thermobifida fusca... BLink CDD UniProt Pfam
Please send your corrections, questions and comments to Michael Galperin
.