c-di-GMP-specific phosphodiesterase class I (EAL) domains in various Bacteria
Acidobacteria
. Acidobacteria bacterium Ellin345 ...................... 2 hits
. Solibacter usitatus Ellin6076 ......................... 1 hit
Deinococcus-Thermus group
. Deinococcus radiodurans R1 ............................ 5 hits
. Thermus thermophilus HB27 ............................. 1 hit*
Spirochetes
. Borrelia afzelii PKo .................................. 1 hit
. Borrelia burgdorferi B31 .............................. 1 hit
. Borrelia garinii PBi .................................. 1 hit
. Leptospira borgpetersenii serovar Hardjo-bovis L550 ... 4 hits
. Leptospira interrogans serovar Lai str. 56601 ......... 8 hits
. Treponema denticola ATCC 35405 ........................ 2 hits
Unclassified Proteobacteria
. Magnetococcus sp. MC-1 ................................ 18 hits
Other phyla
. Aquifex aeolicus VF5 .................................. 7 hits*
. Rhodopirellula baltica SH 1 ........................... 3 hits
. Salinibacter ruber DSM 13855 .......................... 1 hit
Acidobacteria
Acidobacteria bacterium Ellin345
Acid345_2398 gi|94969425|ref|YP_591473.1| periplasmic sensor diguanyl... BLink CDD UniProt Pfam
Acid345_0347 gi|94967378|ref|YP_589426.1| diguanylate phosphodiestera... BLink CDD UniProt Pfam
Solibacter usitatus Ellin6076
Acid_4927 gi|116624015|ref|YP_826171.1| diguanylate phosphodiesteras... BLink CDD UniProt Pfam
Deinococcus-Thermus group
Deinococcus radiodurans R1
DR0466 gi|15805493|ref|NP_294189.1| sensory box/GGDEF family prot... BLink CDD UniProt Pfam
DR0750 gi|15805776|ref|NP_294474.1| sensory box/GGDEF family prot... BLink CDD UniProt Pfam
DR1629 gi|15806634|ref|NP_295352.1| c-di-GMP phosphodiesterase A ... BLink CDD UniProt Pfam
DR2299 gi|15807290|ref|NP_296020.1| GGDEF family protein [Deinoco... BLink CDD UniProt Pfam
DR2492 gi|15807665|ref|NP_296212.1| hypothetical protein DR2492 ... BLink CDD UniProt Pfam
Thermus thermophilus HB27
TTC0422 gi|46198730|ref|YP_004397.1| sensory transduction histidin... BLink CDD UniProt Pfam
*TTC0628 gi|46198936|ref|YP_004603.1| hypothetical protein TTC0628 ... BLink CDD UniProt Pfam
Spirochaetes
Borrelia afzelii PKo
BAPKO_0370 gi|111115185|ref|YP_709803.1| hypothetical protein BAPKO_0... BLink CDD UniProt Pfam
Borrelia burgdorferi B31
BB0363 gi|15594708|ref|NP_212497.1| periplasmic protein [Borrelia... BLink CDD UniProt Pfam
Borrelia garinii PBi
BG0362 gi|51573190|gb|AAU07215.1| periplasmic protein [Borrelia g... BLink CDD UniProt Pfam
Leptospira borgpetersenii serovar Hardjo-bovis L550
LBL_0751 gi|116327523|ref|YP_797243.1| Signal transduction protein ... BLink CDD UniProt Pfam
LBL_2032 gi|116328665|ref|YP_798385.1| Response regulator [Leptospi... BLink CDD UniProt Pfam
LBL_2723 gi|116329278|ref|YP_798998.1| Signal transduction protein ... BLink CDD UniProt Pfam
LBL_4130 gi|116329663|ref|YP_799382.1| hypothetical protein LBL_413... BLink CDD UniProt Pfam
Leptospira interrogans serovar Lai str. 56601
LA1185 gi|24213885|ref|NP_711366.1| Response regulator [Leptospir... BLink CDD UniProt Pfam
LA1983 gi|24214684|ref|NP_712165.1| hypothetical protein LA1983 ... BLink CDD UniProt Pfam
LA2827 gi|24215527|ref|NP_713008.1| response regulator [Leptospir... BLink CDD UniProt Pfam
LA3104 gi|24215803|ref|NP_713284.1| hypothetical protein LA3104 ... BLink CDD UniProt Pfam
LA3909 gi|24216608|ref|NP_714089.1| hypothetical protein LA3909 [... BLink CDD UniProt Pfam
LB133 gi|24217194|ref|NP_714677.1| probable protein containing E... BLink CDD UniProt Pfam
LB235 gi|24217296|ref|NP_714779.1| response regulator [Leptospir... BLink CDD UniProt Pfam
LB261 gi|24217322|ref|NP_714805.1| hypothetical protein LB261 [L... BLink CDD UniProt Pfam
Treponema denticola ATCC 35405
TDE0128 gi|42525647|ref|NP_970745.1| HAMP domain/GGDEF domain/EAL ... BLink CDD UniProt Pfam
TDE2075 gi|42527578|ref|NP_972676.1| GGDEF domain/EAL domain prote... BLink CDD UniProt Pfam
unclassified Proteobacteria
Magnetococcus sp. MC-1
GGDEF-EAL
Mmc1_0403 gi|117923718|ref|YP_864335.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Mmc1_0408 gi|117923723|ref|YP_864340.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Mmc1_0887 gi|117924195|ref|YP_864812.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Mmc1_1004 gi|117924311|ref|YP_864928.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Mmc1_1710 gi|117925008|ref|YP_865625.1| response regulator receiver ... BLink CDD UniProt Pfam
Mmc1_1795 gi|117925092|ref|YP_865709.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Mmc1_1829 gi|117925126|ref|YP_865743.1| response regulator receiver ... BLink CDD UniProt Pfam
Mmc1_1949 gi|117925246|ref|YP_865863.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Mmc1_2220 gi|117925510|ref|YP_866127.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Mmc1_2227 gi|117925517|ref|YP_866134.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Mmc1_2380 gi|117925669|ref|YP_866286.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Mmc1_2390 gi|117925679|ref|YP_866296.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Mmc1_2450 gi|117925739|ref|YP_866356.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Mmc1_2478 gi|117925767|ref|YP_866384.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Mmc1_2641 gi|117925926|ref|YP_866543.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Mmc1_2972 gi|117926252|ref|YP_866869.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Mmc1_3395 gi|117926670|ref|YP_867287.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
EAL only
Mmc1_0993 gi|117924300|ref|YP_864917.1| diguanylate phosphodiesteras... BLink CDD UniProt Pfam
Other phyla
Aquifex aeolicus VF5
AQ_027 gi|2982789|gb|AAC06414.1| hypothetical protein [Aquifex ae... BLink CDD UniProt Pfam
AQ_083 gi|2982831|gb|AAC06454.1| hypothetical protein [Aquifex ae... BLink CDD UniProt Pfam
AQ_367 gi|2983047|gb|AAC06656.1| hypothetical protein [Aquifex ae... BLink CDD UniProt Pfam
AQ_478 gi|2983146|gb|AAC06749.1| hypothetical protein [Aquifex ae... BLink CDD UniProt Pfam
AQ_1151 gi|2983622|gb|AAC07191.1| hypothetical protein [Aquifex ae... BLink CDD UniProt Pfam
AQ_1442 gi|2983839|gb|AAC07394.1| hypothetical protein [Aquifex ae... BLink CDD UniProt Pfam
AQ_2044 gi|2984273|gb|AAC07799.1| hypothetical protein [Aquifex ae... BLink CDD UniProt Pfam
*AQ_341 gi|2983024|gb|AAC06635.1| hypothetical protein [Aquifex ae... BLink CDD UniProt Pfam
Rhodopirellula baltica SH 1
RB3251 gi|32472401|ref|NP_865395.1| hypothetical protein RB3251 [... BLink CDD UniProt Pfam
RB3605 gi|32472612|ref|NP_865606.1| conserved hypothetical protei... BLink CDD UniProt Pfam
RB12766 gi|32477698|ref|NP_870692.1| conserved hypothetical protei... BLink CDD UniProt Pfam
Salinibacter ruber DSM 13855
SRU_0251 gi|83814875|ref|YP_444397.1| sensory box/ggdef family prot... BLink CDD UniProt Pfam
Please send your corrections, questions and comments to Michael Galperin