Firmicutes
. Bacillus anthracis str. Ames ................................ 7 hits
. Bacillus cereus ATCC 14579 .................................. 5 hits
. Bacillus clausii KSM-K16 ..................................... 1 hit
. Bacillus halodurans C-125 ................................... 2 hits
. Bacillus licheniformis ATCC 14580 ........................... 2 hits
. Bacillus subtilis subsp. subtilis str. 168 .................. 3 hits
. Bacillus thuringiensis serovar konkukian str. 97-27 ......... 7 hits
. Carboxydothermus hydrogenoformans Z-2901 .................... 2 hits
. Clostridium acetobutylicum ATCC 824 ......................... 4 hits
. Clostridium difficile 630 ................................... 19 hits
. Clostridium novyi NT ........................................ 4 hits
. Clostridium perfringens str. 13 ............................. 3 hits
. Clostridium tetani E88 ...................................... 1 hits
. Desulfitobacterium hafniense Y51 ............................ 7 hits
. Geobacillus kaustophilus HTA426 ............................. 5 hits
. Lactobacillus acidophilus NCFM .............................. 2 hits
. Lactobacillus brevis ATCC 367 ............................... 3 hits
. Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 ...... 0 hits*
. Lactobacillus plantarum WCFS1 ............................... 5 hits
. Lactobacillus salivarius subsp. salivarius UCC118 ........... 1 hit
. Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 .... 6 hits
. Listeria innocua Clip11262 .................................. 3 hits
. Listeria monocytogenes EGD-e ................................ 3 hits
. Listeria welshimeri serovar 6b str. SLCC5334 ................ 3 hits
. Moorella thermoacetica ATCC 39073 ........................... 1 hit
. Oceanobacillus iheyensis HTE831 ............................. 2 hits
. Oenococcus oeni PSU-1 ....................................... 1 hit
. Pediococcus pentosaceus ATCC 25745 .......................... 4 hits
. Symbiobacterium thermophilum IAM 14863 ...................... 3 hits
. Thermoanaerobacter tengcongensis MB4 ........................ 1 hit
Firmicutes
Bacillus anthracis str. Ames
GGDEF-EAL
BA0548 gi|47525821|ref|YP_017170.1| sensory box/ggdef family prot... BLink CDD UniProt Pfam
BA0628 gi|47525907|ref|YP_017256.1| sensory box/ggdef family prot... BLink CDD UniProt Pfam
BA2533 gi|47527823|ref|YP_019172.1| sensory box/ggdef family prot... BLink CDD UniProt Pfam
BA3879 gi|47529169|ref|YP_020518.1| sensory box/ggdef family prot... BLink CDD UniProt Pfam
BA5543 gi|47530863|ref|YP_022212.1| sensory box/ggdef family prot... BLink CDD UniProt Pfam
BA5593 gi|47530915|ref|YP_022264.1| sensory box/ggdef family prot... BLink CDD UniProt Pfam
EAL only
BA4203 gi|47529498|ref|YP_020847.1| eal-domain protein [Bacillus ... BLink CDD UniProt Pfam
Bacillus cereus ATCC 14579
BC0547 gi|30018735|ref|NP_830366.1| Sensory box/GGDEF family prot... BLink CDD UniProt Pfam
BC0628 gi|30018813|ref|NP_830444.1| Sensory box/GGDEF family prot... BLink CDD UniProt Pfam
BC3747 gi|30021841|ref|NP_833472.1| Sensory box/GGDEF family prot... BLink CDD UniProt Pfam
BC3989 gi|30022077|ref|NP_833708.1| Diguanylate cyclase/phosphodi... BLink CDD UniProt Pfam
BC5302 gi|30023334|ref|NP_834965.1| Sensory box/GGDEF family prot... BLink CDD UniProt Pfam
Bacillus clausii KSM-K16
ABC2147 gi|56963912|ref|YP_175643.1| hypothetical protein ABC214 ... BLink CDD UniProt Pfam
Bacillus halodurans C-125
BH2277 gi|15614840|ref|NP_243143.1| hypothetical protein BH2277 ... BLink CDD UniProt Pfam
BH2971 gi|15615533|ref|NP_243837.1| hypothetical protein BH2971 ... BLink CDD UniProt Pfam
Bacillus licheniformis ATCC 14580
BLi01621 gi|52080008|ref|YP_078799.1| YkuI [Bacillus licheniformis ... BLink CDD UniProt Pfam
BLi03362 gi|52081671|ref|YP_080462.1| putative Acyl-coA-binding pro... BLink CDD UniProt Pfam
Bacillus subtilis subsp. subtilis str. 168
ykoW gi|50812223|ref|YP_054577.1| hypothetical protein BSU13420... BLink CDD UniProt Pfam
ykuI gi|16078473|ref|NP_389292.1| hypothetical protein BSU14090... BLink CDD UniProt Pfam
yuxH gi|16080225|ref|NP_391052.1| hypothetical protein BSU31740... BLink CDD UniProt Pfam
Bacillus thuringiensis serovar konkukian str. 97-27
GGDEF-EAL
BT9727_0460 gi|49481708|ref|YP_034808.1| sensory box/GGDEF family pr... BLink CDD UniProt Pfam
BT9727_0539 gi|49476849|ref|YP_034886.1| sensory box, GGDEF family p... BLink CDD UniProt Pfam
BT9727_2314 gi|49477748|ref|YP_036640.1| sensory box/GGDEF family pr... BLink CDD UniProt Pfam
BT9727_3494 gi|49478361|ref|YP_037814.1| sensory box/GGDEF family [B... BLink CDD UniProt Pfam
BT9727_4983 gi|49481140|ref|YP_039292.1| sensory box/GGDEF family pr... BLink CDD UniProt Pfam
BT9727_5032 gi|49478974|ref|YP_039341.1| conserved hypothetical prot... BLink CDD UniProt Pfam
EAL only
BT9727_3731 gi|49478873|ref|YP_038050.1| EAL-domain protein [Bacillu... BLink CDD UniProt Pfam
Carboxydothermus hydrogenoformans Z-2901
CHY_0074 gi|78043610|ref|YP_358946.1| EAL domain protein [Carboxydo ... BLink CDD UniProt Pfam
CHY_1906 gi|78044640|ref|YP_360725.1| sensory box/GGDEF domain/EAL ... BLink CDD UniProt Pfam
Clostridium acetobutylicum ATCC 824
CAC0322 gi|15893614|ref|NP_346963.1| Sensory protein, containing E... BLink CDD UniProt Pfam
CAC0631 gi|15893919|ref|NP_347268.1| Signal transduction protein c... BLink CDD UniProt Pfam
CAC2702 gi|15895959|ref|NP_349308.1| Possible signal transduction ... BLink CDD UniProt Pfam
CAC3019 gi|15896271|ref|NP_349620.1| Sensory transduction protein ... BLink CDD UniProt Pfam
Clostridium difficile 630
GGDEF-EAL
CD0204 gi|126697775|ref|YP_001086672.1| putative signaling protei... BLink CDD UniProt Pfam
CD0522 gi|126698103|ref|YP_001087000.1| putative signaling protei... BLink CDD UniProt Pfam
CD0748 gi|126698328|ref|YP_001087225.1| putative signaling protei... BLink CDD UniProt Pfam
CD0757 gi|126698337|ref|YP_001087234.1| putative signaling protei... BLink CDD UniProt Pfam
CD0811 gi|126698391|ref|YP_001087288.1| putative signaling protei... BLink CDD UniProt Pfam
CD1421 gi|126699026|ref|YP_001087923.1| putative signaling protei... BLink CDD UniProt Pfam
CD1476 gi|126699080|ref|YP_001087977.1| putative signaling protei... BLink CDD UniProt Pfam
CD1515 gi|126699119|ref|YP_001088016.1| putative signaling protei... BLink CDD UniProt Pfam
CD1538 gi|126699142|ref|YP_001088039.1| putative signaling protei... BLink CDD UniProt Pfam
CD1616 gi|126699220|ref|YP_001088117.1| putative signaling protei... BLink CDD UniProt Pfam
CD1651 gi|126699255|ref|YP_001088152.1| putative signaling protei... BLink CDD UniProt Pfam
CD1840 gi|126699449|ref|YP_001088346.1| putative signaling protei... BLink CDD UniProt Pfam
CD2134 gi|126699750|ref|YP_001088647.1| putative signaling protei... BLink CDD UniProt Pfam
CD2663 gi|126700277|ref|YP_001089174.1| putative signaling protei... BLink CDD UniProt Pfam
CD2753 gi|126700369|ref|YP_001089266.1| putative signaling protei... BLink CDD UniProt Pfam
CD2760 gi|126700376|ref|YP_001089273.1| putative signaling protei... BLink CDD UniProt Pfam
CD2873 gi|126700489|ref|YP_001089386.1| putative signaling protei... BLink CDD UniProt Pfam
CD2965 gi|126700585|ref|YP_001089482.1| putative signaling protei... BLink CDD UniProt Pfam
EAL only
CD3650 gi|126701277|ref|YP_001090174.1| putative signaling protei... BLink CDD UniProt Pfam
Clostridium novyi NT
GGDEF-EAL
NT01CX_0985 gi|118443995|ref|YP_877082.1| nitrogen fixation positive ... BLink CDD UniProt Pfam
NT01CX_2347 gi|118443039|ref|YP_878420.1| Diguanylate cyclase/phospho... BLink CDD UniProt Pfam
NT01CX_2348 gi|118443481|ref|YP_878421.1| sensory box/GGDEF family pr... BLink CDD UniProt Pfam
EAL only
NT01CX_2286 gi|118443006|ref|YP_878359.1| EAL domain protein, putativ... BLink CDD UniProt Pfam
Clostridium perfringens str. 13
CPE0245 gi|18143903|dbj|BAB79951.1| conserved hypothetical protein... BLink CDD UniProt Pfam
CPE0914 gi|18144574|dbj|BAB80620.1| conserved hypothetical protein... BLink CDD UniProt Pfam
CPE1008 gi|18144669|dbj|BAB80714.1| conserved hypothetical protein... BLink CDD UniProt Pfam
Clostridium tetani E88
CTC01783 gi|28211429|ref|NP_782373.1| hypothetcial protein [Clostri... BLink CDD UniProt Pfam
Desulfitobacterium hafniense Y51
GGDEF-EAL
DSY1201 gi|89893947|ref|YP_517434.1| hypothetical protein DSY1201... BLink CDD UniProt Pfam
DSY1224 gi|89893970|ref|YP_517457.1| hypothetical protein DSY1224... BLink CDD UniProt Pfam
DSY3381 gi|89896127|ref|YP_519614.1| hypothetical protein DSY3381... BLink CDD UniProt Pfam
DSY4122 gi|89896868|ref|YP_520355.1| hypothetical protein DSY4122... BLink CDD UniProt Pfam
EAL only
DSY0462 gi|89893208|ref|YP_516695.1| hypothetical protein DSY0462... BLink CDD UniProt Pfam
DSY1020 gi|89893766|ref|YP_517253.1| hypothetical protein DSY1020... BLink CDD UniProt Pfam
DSY2436 gi|89895182|ref|YP_518669.1| hypothetical protein DSY2436... BLink CDD UniProt Pfam
Geobacillus kaustophilus HTA426
GK0401 gi|56418936|ref|YP_146254.1| hypothetical protein GK0401 ... BLink CDD UniProt Pfam
GK0698 gi|56419233|ref|YP_146551.1| hypothetical protein GK0698 ... BLink CDD UniProt Pfam
GK1045 gi|56419580|ref|YP_146898.1| hypothetical protein GK1045 ... BLink CDD UniProt Pfam
GK1463 gi|56419998|ref|YP_147316.1| hypothetical protein GK1463 ... BLink CDD UniProt Pfam
GK1469 gi|56420004|ref|YP_147322.1| hypothetical protein GK1469 ... BLink CDD UniProt Pfam
Lactobacillus acidophilus NCFM
LBA1414 gi|58337685|ref|YP_194270.1| hypothetical protein LBA1414... BLink CDD UniProt Pfam
*LBA1415 gi|58337686|ref|YP_194271.1| hypothetical protein LBA1415... BLink CDD UniProt Pfam
Lactobacillus brevis ATCC 367
LVIS_0206 gi|116332876|ref|YP_794403.1| C-di-GMP-specific phosphodie... BLink CDD UniProt Pfam
LVIS_0563 gi|116333213|ref|YP_794740.1| C-di-GMP-specific phosphodie... BLink CDD UniProt Pfam
LVIS_1302 gi|116333911|ref|YP_795438.1| C-di-GMP-specific phosphodie... BLink CDD UniProt Pfam
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842
*Ldb0062 gi|104773295|ref|YP_618275.1| hypothetical protein Ldb0062... BLink CDD UniProt Pfam
*Ldb0074 gi|104773304|ref|YP_618284.1| hypothetical protein Ldb0074... BLink CDD UniProt Pfam
*Ldb1285 gi|104774172|ref|YP_619152.1| hypothetical protein Ldb1285... BLink CDD UniProt Pfam
Lactobacillus plantarum WCFS1
lp_0758 gi|28377617|ref|NP_784509.1| protein containing diguanylat... BLink CDD UniProt Pfam
lp_0765 gi|28377623|ref|NP_784515.1| protein containing diguanylat... BLink CDD UniProt Pfam
lp_0823 gi|28377672|ref|NP_784564.1| protein containing diguanylat... BLink CDD UniProt Pfam
lp_2714 gi|28379209|ref|NP_786101.1| protein containing diguanylat... BLink CDD UniProt Pfam
lp_2930 gi|28379380|ref|NP_786272.1| protein containing diguanylat... BLink CDD UniProt Pfam
Lactobacillus salivarius subsp. salivarius UCC118
LSL_1016 gi|90961991|ref|YP_535907.1| hypothetical protein LSL_1016... BLink CDD UniProt Pfam
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
LEUM_1557 gi|116618651|ref|YP_819022.1| C-di-GMP-specific phosphodie... BLink CDD UniProt Pfam
Listeria innocua Clip11262
lin0158 gi|16799235|ref|NP_469503.1| hypothetical protein lin0158 ... BLink CDD UniProt Pfam
lin0178 gi|16799255|ref|NP_469523.1| hypothetical protein lin0178 ... BLink CDD UniProt Pfam
lin2028 gi|16801094|ref|NP_471362.1| hypothetical protein lin2028 ... BLink CDD UniProt Pfam
Listeria monocytogenes EGD-e
lmo0111 gi|16802159|ref|NP_463644.1| hypothetical protein lmo0111 ... BLink CDD UniProt Pfam
lmo0131 gi|16802179|ref|NP_463664.1| hypothetical protein lmo0131 ... BLink CDD UniProt Pfam
lmo1914 gi|16803953|ref|NP_465438.1| hypothetical protein lmo1914 ... BLink CDD UniProt Pfam
Listeria welshimeri serovar 6b str. SLCC5334
lwe0102 gi|116871522|ref|YP_848303.1| EAL domain protein [Listeria... BLink CDD UniProt Pfam
lwe0113 gi|116871533|ref|YP_848314.1| EAL domain protein [Listeria... BLink CDD UniProt Pfam
lwe1933 gi|116873349|ref|YP_850130.1| hypothetical protein lwe1933... BLink CDD UniProt Pfam
Moorella thermoacetica ATCC 39073
Moth_0346 gi|83589214|ref|YP_429223.1| diguanylate phosphodiesterase... BLink CDD UniProt Pfam
Oceanobacillus iheyensis HTE831
OB1359 gi|23098814|ref|NP_692280.1| truncated nitrogen fixation p... BLink CDD UniProt Pfam
OB2252 gi|23099707|ref|NP_693173.1| hypothetical protein OB2252 ... BLink CDD UniProt Pfam
Oenococcus oeni PSU-1
OEOE_1518 gi|116491496|ref|YP_811040.1| C-di-GMP-specific phosphodie... BLink CDD UniProt Pfam
Pediococcus pentosaceus ATCC 25745
PEPE_0035 gi|116491853|ref|YP_803588.1| C-di-GMP-specific phosphodie... BLink CDD UniProt Pfam
PEPE_0103 gi|116491920|ref|YP_803655.1| C-di-GMP-specific phosphodie... BLink CDD UniProt Pfam
PEPE_1642 gi|116493370|ref|YP_805105.1| C-di-GMP-specific phosphodie... BLink CDD UniProt Pfam
PEPE_1789 gi|116493517|ref|YP_805252.1| C-di-GMP-specific phosphodie... BLink CDD UniProt Pfam
Symbiobacterium thermophilum IAM 14863
STH727 gi|51891865|ref|YP_074556.1| hypothetical protein STH727 ... BLink CDD UniProt Pfam
STH1699 gi|51892837|ref|YP_075528.1| hypothetical protein STH1699 ... BLink CDD UniProt Pfam
STH2848 gi|51893986|ref|YP_076677.1| hypothetical protein STH2848 ... BLink CDD UniProt Pfam
Thermoanaerobacter tengcongensis MB4
TTE1081 gi|20807551|ref|NP_622722.1| Diguanylate cyclase/phosphodi... BLink CDD UniProt Pfam
Please send your corrections, questions and comments to Michael Galperin