c-di-GMP phosphodiesterase class I (EAL) domains in Actinobacteria
Actinobacteria
. Acidothermus cellulolyticus 11B ..................... 10 hits
. Arthrobacter aurescens TC1 .......................... 5 hits
. Arthrobacter sp. FB24 ............................... 8 hits
. Corynebacterium glutamicum ATCC 13032 ............... 1 hit
. Frankia alni ACN14a ................................. 13 hits
. Frankia sp. CcI3 .................................... 10 hits
. Mycobacterium avium str. k10 ........................ 3 hits
. Mycobacterium leprae TN ............................. 2 hits
. Mycobacterium bovis AF2122/97 ....................... 2 hits
. Mycobacterium smegmatis str. MC2 155 ................ 1 hit
. Mycobacterium sp. MCS ............................... 4 hits
. Mycobacterium tuberculosis H37Rv .................... 2 hits
. Mycobacterium vanbaalenii PYR-1 ..................... 5 hits
. Nocardia farcinica IFM 10152 ........................ 2 hits
. Nocardioides sp. JS614 .............................. 2 hits
. Rhodococcus sp. RHA1 ................................ 3 hits
. Rubrobacter xylanophilus DSM 9941 ................... 6 hits
. Streptomyces avermitilis MA-4680 .................... 5 hits
. Streptomyces coelicolor A3(2) ....................... 4 hits
. Thermobifida fusca YX ............................... 3 hits
Actinobacteria
Acidothermus cellulolyticus 11B
GGDEF-EAL
Acel_0823 gi|117928031|ref|YP_872582.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Acel_1420 gi|117928627|ref|YP_873178.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Acel_1434 gi|117928641|ref|YP_873192.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Acel_1481 gi|117928688|ref|YP_873239.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Acel_1662 gi|117928869|ref|YP_873420.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Acel_1740 gi|117928947|ref|YP_873498.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Acel_1905 gi|117929112|ref|YP_873663.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
EAL only
Acel_0529 gi|117927737|ref|YP_872288.1| diguanylate phosphodiesteras... BLink CDD UniProt Pfam
Acel_0828 gi|117928036|ref|YP_872587.1| diguanylate phosphodiesteras... BLink CDD UniProt Pfam
Acel_2099 gi|117929306|ref|YP_873857.1| response regulator receiver ... BLink CDD UniProt Pfam
Arthrobacter aurescens TC1
GGDEF-EAL
AAur_0628 gi|119962652|ref|YP_946434.1| putative GGDEF domain/EAL do... BLink CDD UniProt Pfam
AAur_3242 gi|119964390|ref|YP_948938.1| putative GGDEF domain/EAL do... BLink CDD UniProt Pfam
AAur_pTC20236 gi|119952737|ref|YP_950384.1| Sensory Box Protein [Arth... BLink CDD UniProt Pfam
EAL only
AAur_0324 gi|119963877|ref|YP_946141.1| putative EAL domain protein ... BLink CDD UniProt Pfam
AAur_1869 gi|119963672|ref|YP_947618.1| putative EAL domain protein ... BLink CDD UniProt Pfam
Arthrobacter sp. FB24
GGDEF-EAL
Arth_0113 gi|116668681|ref|YP_829614.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Arth_1068 gi|116669629|ref|YP_830562.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Arth_1783 gi|116670340|ref|YP_831273.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Arth_3769 gi|116672311|ref|YP_833244.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
EAL only
Arth_1771 gi|116670329|ref|YP_831262.1| diguanylate phosphodiesteras... BLink CDD UniProt Pfam
Arth_1906 gi|116670455|ref|YP_831388.1| diguanylate phosphodiesteras... BLink CDD UniProt Pfam
Arth_1985 gi|116670533|ref|YP_831466.1| diguanylate phosphodiesteras... BLink CDD UniProt Pfam
Arth_3854 gi|116672396|ref|YP_833329.1| diguanylate phosphodiesteras... BLink CDD UniProt Pfam
Corynebacterium glutamicum ATCC 13032
cg1179 gi|19552261|ref|NP_600263.1| GGDEF family protein [Coryneb... BLink CDD UniProt Pfam
Frankia alni ACN14a
GGDEF-EAL
FRAAL1639 gi|111221089|ref|YP_711883.1| Putative sensory box/GGDEF f... BLink CDD UniProt Pfam
FRAAL1954 gi|111221392|ref|YP_712186.1| hypothetical protein; putati... BLink CDD UniProt Pfam
FRAAL2035 gi|111221471|ref|YP_712265.1| hypothetical protein FRAAL20... BLink CDD UniProt Pfam
FRAAL4612 gi|111224004|ref|YP_714798.1| hypothetical protein; putati... BLink CDD UniProt Pfam
FRAAL5548 gi|111224913|ref|YP_715707.1| hypothetical protein; putati... BLink CDD UniProt Pfam
FRAAL5824 gi|111225181|ref|YP_715975.1| Hypothetical protein; putati... BLink CDD UniProt Pfam
FRAAL5972 gi|111225318|ref|YP_716112.1| hypothetical protein FRAAL59... BLink CDD UniProt Pfam
EAL only
FRAAL3871 gi|111223278|ref|YP_714072.1| putative regulatory protein;... BLink CDD UniProt Pfam
FRAAL3921 gi|111223328|ref|YP_714122.1| hypothetical protein FRAAL39... BLink CDD UniProt Pfam
FRAAL4051 gi|111223454|ref|YP_714248.1| hypothetical protein FRAAL40... BLink CDD UniProt Pfam
FRAAL5708 gi|111225067|ref|YP_715861.1| hypothetical protein; putati... BLink CDD UniProt Pfam
FRAAL5844 gi|111225200|ref|YP_715994.1| hypothetical protein; putati... BLink CDD UniProt Pfam
FRAAL6490 gi|111225825|ref|YP_716619.1| hypothetical protein FRAAL64... BLink CDD UniProt Pfam
Frankia sp. CcI3
GGDEF-EAL
Francci3_0377 gi|86739093|ref|YP_479493.1| diguanylate cyclase/phosph... BLink CDD UniProt Pfam
Francci3_1004 gi|86739716|ref|YP_480116.1| diguanylate cyclase/phosph... BLink CDD UniProt Pfam
Francci3_1288 gi|86739994|ref|YP_480394.1| diguanylate cyclase/phosph... BLink CDD UniProt Pfam
Francci3_1622 gi|86740327|ref|YP_480727.1| diguanylate cyclase/phosph... BLink CDD UniProt Pfam
Francci3_3617 gi|86742298|ref|YP_482698.1| diguanylate cyclase/phosph... BLink CDD UniProt Pfam
Francci3_3740 gi|86742420|ref|YP_482820.1| diguanylate cyclase/phosph... BLink CDD UniProt Pfam
EAL only
Francci3_2139 gi|86740840|ref|YP_481240.1| diguanylate phosphodiester... BLink CDD UniProt Pfam
Francci3_2421 gi|86741117|ref|YP_481517.1| diguanylate phosphodiester... BLink CDD UniProt Pfam
Francci3_3515 gi|86742197|ref|YP_482597.1| diguanylate phosphodiester... BLink CDD UniProt Pfam
Francci3_3633 gi|86742314|ref|YP_482714.1| diguanylate phosphodiester... BLink CDD UniProt Pfam
Mycobacterium avium subsp. paratuberculosis str. k10
GGDEF-EAL
MAP0949 gi|41407047|ref|NP_959883.1| hypothetical protein MAP0949 ... BLink CDD UniProt Pfam
MAP2512 gi|41408610|ref|NP_961446.1| hypothetical protein MAP2512 ... BLink CDD UniProt Pfam
EAL only
MAP1346c gi|41407444|ref|NP_960280.1| hypothetical protein MAP1346c... BLink CDD UniProt Pfam
Mycobacterium bovis AF2122/97
Mb1389c gi|31792550|ref|NP_855043.1| hypothetical protein Mb1389c ... BLink CDD UniProt Pfam
Mb1392c gi|31792553|ref|NP_855046.1| hypothetical protein Mb1392c ... BLink CDD UniProt Pfam
Mycobacterium leprae TN
ML1750 gi|15827936|ref|NP_302199.1| hypothetical protein ML1750 ... BLink CDD UniProt Pfam
ML1752 gi|15827938|ref|NP_302201.1| hypothetical protein ML1752 ... BLink CDD UniProt Pfam
Mycobacterium smegmatis str. MC2 155
MSMEG_2196 gi|118467440|ref|YP_886551.1| sensory box/response regulat... BLink CDD UniProt Pfam
Mycobacterium sp. MCS
GGDEF-EAL
Mmcs_1615 gi|108798585|ref|YP_638782.1| GGDEF:EAL [Mycobacterium sp ... BLink CDD UniProt Pfam
Mmcs_1748 gi|108798716|ref|YP_638913.1| GGDEF:EAL:GAF [Mycobacterium... BLink CDD UniProt Pfam
Mmcs_2215 gi|108799182|ref|YP_639379.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Mmcs_4747 gi|108801710|ref|YP_641907.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Mycobacterium tuberculosis H37Rv
Rv1354c gi|15608494|ref|NP_215870.1| hypothetical protein Rv1354c ... BLink CDD UniProt Pfam
Rv1357c gi|15608497|ref|NP_215873.1| hypothetical protein Rv1357c ... BLink CDD UniProt Pfam
Mycobacterium vanbaalenii PYR-1
GGDEF-EAL
Mvan_1152 gi|120402164|ref|YP_951993.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Mvan_1918 gi|120402915|ref|YP_952744.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Mvan_1967 gi|120402963|ref|YP_952792.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Mvan_4640 gi|120405592|ref|YP_955421.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
EAL only
Mvan_1667 gi|120402673|ref|YP_952502.1| diguanylate phosphodiesteras... BLink CDD UniProt Pfam
Nocardia farcinica IFM 10152
GGDEF-EAL
nfa1410 gi|54022105|ref|YP_116347.1| hypothetical protein nfa1410 ... BLink CDD UniProt Pfam
nfa49160 gi|54026890|ref|YP_121132.1| hypothetical protein nfa49160... BLink CDD UniProt Pfam
Nocardioides sp. JS614
GGDEF-EAL
Noca_1138 gi|119715376|ref|YP_922341.1| diguanylate cyclase [Nocardi... BLink CDD UniProt Pfam
Noca_1139 gi|119715377|ref|YP_922342.1| diguanylate cyclase [Nocardi... BLink CDD UniProt Pfam
Rhodococcus sp. RHA1
RHA1_ro00511 gi|111017533|ref|YP_700505.1| hypothetical protein RHA1_... BLink CDD UniProt Pfam
RHA1_ro05753 gi|111022717|ref|YP_705689.1| hypothetical protein RHA1_... BLink CDD UniProt Pfam
RHA1_ro05772 gi|111022736|ref|YP_705708.1| hypothetical protein RHA1_... BLink CDD UniProt Pfam
Rubrobacter xylanophilus DSM 9941
GGDEF-EAL
Rxyl_0492 gi|108803341|ref|YP_643278.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Rxyl_1544 gi|108804381|ref|YP_644318.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Rxyl_2783 gi|108805572|ref|YP_645509.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Rxyl_1156 gi|108803997|ref|YP_643934.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
Rxyl_2092 gi|108804911|ref|YP_644848.1| diguanylate cyclase/phosphod... BLink CDD UniProt Pfam
EAL only
Rxyl_2093 gi|108804912|ref|YP_644849.1| diguanylate phosphodiesteras... BLink CDD UniProt Pfam
Streptomyces avermitilis MA-4680
GGDEF-EAL
SAV2734 gi|29606383|dbj|BAC70445.1| putative integral membrane pho... BLink CDD UniProt Pfam
SAV2747 gi|29606396|dbj|BAC70458.1| putative phosphodiesterase [St... BLink CDD UniProt Pfam
SAV5237 gi|29608897|dbj|BAC72949.1| putative sensory box/GGDEF fam... BLink CDD UniProt Pfam
SAV6965 gi|29610630|dbj|BAC74676.1| hypothetical protein [Streptom... BLink CDD UniProt Pfam
SAV7304 gi|29610971|dbj|BAC75015.1| hypothetical protein [Streptom... BLink CDD UniProt Pfam
Streptomyces coelicolor A3(2)
GGDEF-EAL
SCO0928 gi|6580642|emb|CAB63177.1| conserved hypothetical protein ... BLink CDD UniProt Pfam
SCO2817 gi|14799963|emb|CAC44280.1| conserved hypothetical protein... BLink CDD UniProt Pfam
SCO5495 gi|4467246|emb|CAB37571.1| putative phosphodiesterase [Str... BLink CDD UniProt Pfam
SCO5511 gi|4467262|emb|CAB37587.1| putative membrane associated ph... BLink CDD UniProt Pfam
EAL only
*SCO1397 gi|7649608|emb|CAB88893.1| hypothetical protein [Streptomy... BLink CDD UniProt Pfam
Thermobifida fusca YX
GGDEF-EAL
Tfu_0604 gi|72161008|ref|YP_288665.1| putative phosphodiesterase [T... BLink CDD UniProt Pfam
Tfu_0610 gi|72161014|ref|YP_288671.1| PAS:GGDEF [Thermobifida fusca... BLink CDD UniProt Pfam
EAL only
Tfu_1977 gi|72162376|ref|YP_290033.1| EAL domain [Thermobifida fusc... BLink CDD UniProt Pfam
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