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Exploring 3D Molecular Structures

  

This course is free and can be offered at your institution. The NCBI will pay all travel expenses for the instructors. Please see the information below for requirements and sample schedules.

To schedule a course write to Eric Sayers or Medha Bhagwat

   Requirements for Hosting a Course

  • A pre-registered audience of at least 20 people
  • An auditorium or similar setting with computer projection capabilities and/or
  • A multi-workstation computer classroom with internet access and standard web browsers for each machine
  • An instructor's workstation with projection capabilities in the computer classroom
  • Installation of Cn3D 4.1 on each computer in the classroom


   Sample Schedules
We now offer several schedules based on the size of your computer classroom(s) and the expected number of participants. These guidelines assume that all participants will attend both computer workshops.

Please note that if you want to use more than one computer classroom, we can generally support teaching in only two computer classrooms simultaneously.

These schedules are only guidelines. We will work with you to customize the schedule to accommodate your specific situations.

Schedule 1: A small one-day course
Designed for small courses where the computer classroom(s) will accommodate all of the participants.
Example: Your computer classroom has 25 stations and you expect no more than 25 participants.

Schedule 2: A large one-day course
Designed for larger courses where the number of participants is less than twice the capacity of the available computer classroom(s).
Example: You have two computer classrooms that have 15 stations each and you expect no more than 60 participants.

Schedule 3: A large two-day course with two lectures
Designed for large courses requiring two days of workshops. This schedule requires a lecture hall in the morning for two days, and will accommodate four times the capacity of your computer classrooms.
Example: If your computer classroom has 40 stations, the schedule will accommodate 160 participants.

Schedule 4: A large two-day course with one lecture (our 2004 schedule)
Designed for large courses requiring two days of workshops. This schedule requires a lecture hall in the morning for only one day, and will accommodate four times the capacity of your computer classrooms.
Example: If your computer classroom has 40 stations, the schedule will accommodate 160 participants.


   Schedule 1: A small one-day course

 Workshop I
Working with Structures
Time:
09:00 - 11:30Session I
11:30 - 12:00Consultations
This session includes about 75 minutes of lecture/demonstration followed by a 75-minute period of independent study where participants will work online problems. A 30-minute period after the session is available for one-on-one consultations.
 Workshop II
Working with Alignments
Time:
13:00 - 15:30Session II
15:30 - 17:00Consultations
This session includes about 60 minutes of lecture, 30 minutes of guided demonstration, and a 60-minute period of independent study where participants will work online problems. A 90-minute period after the session is available for one-on-one consultations.


   Schedule 2: A large one-day course

 Lecture I
Structures in Cn3D
Time:
08:30 - 09:30
 
 Workshop I
Working with Structures
Times:
09:45 - 10:45Session A
11:00 - 12:00Session B
These sessions include about 15 minutes of introductory demonstration followed by a 45-minute period of independent study where participants will work online problems.
 Lecture II
Alignments in Cn3D
Time:
13:00 - 14:00
 
 Workshop II
Working with Alignments
Times:
14:15 - 15:45Session C
16:00 - 17:30Session D
These sessions include about 30 minutes of guided demonstration followed by a 60-minute period of independent study where participants will work online problems.


   Schedule 3: A large two-day course with two lectures

 Lecture I
Structures in Cn3D
Date: Day 1
Time:
09:00 - 10:00
 
 Workshop I
Working with Structures
Date: Day 1
Times:
10:15 - 11:30Session A
12:30 - 13:45Session B
14:00 - 15:15Session C
15:30 - 16:45Session D
These sessions include about 30 minutes of introductory demonstration followed by a 45-minute period of independent study where participants will work online problems.
 Lecture II
Alignments in Cn3D
Date: Day 2
Time:
09:00 - 10:00
 
 Workshop II
Working with Alignments
Date: Day 2
Times:
10:15 - 11:45Session E
12:30 - 14:00Session F
14:15 - 15:45Session G
16:00 - 17:30Session H
These sessions include about 30 minutes of guided demonstration followed by a 60-minute period of independent study where participants will work online problems.


   Schedule 4: A large two-day course with one lecture (2004 schedule)

 Lecture
Date: Day 1
Time: 08:30 - 10:30 (one 15 min break)

 Workshop I
Working with Structures
Date: Day 1
Times:
10:45 - 12:00Session A
14:45 - 16:00Session C
 
Date: Day 2
Times:
09:00 - 10:30Session E
13:00 - 14:30Session G
These sessions include about 30 minutes of lecture/demonstration followed by a 45-minute period of independent study where participants will work online problems.
 Workshop II
Working with Alignments
Date: Day 1
Times:
13:00 - 14:30Session B
16:00 - 17:30Session D
 
Date: Day 2
Times:
10:30 - 12:00Session F
14:30 - 16:00Session H
These sessions include about 30 minutes of lecture/demonstration followed by a 60-minute period of independent study where participants will work online problems.


   About the Instructors

Eric Sayers and Medha Bhagwat are biologists on the User Services staff of the National Center for Biotechnology Information.

Revised April 4, 2007

Questions or Comments?
Write to Eric Sayers or Medha Bhagwat