User Question 7 : Find SNPs in a given base pair range on an
assembled genome |
| Sample User Question
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| Have any SNPs been discovered on mouse
chromosome 5 between chromosome position 38000000 and 39000000? Which of these
SNPs have observed alleles of A/G? |
| Flow Chart |
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- Entez SNP -
Limit your SNP search by organism, chromosome number, observed alleles, etc.
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| Step By Step Guide |
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Entrez SNP
- Click on "Limits" from the Entrez SNP screen.
- Check "5" (chromosome box), "Mus musculus" (organism box), "R"
(observed alleles box).
- Note that "observed alleles" are indicated by IUPAC code; hence the "R" for
A/G alleles.
- Type "38000000:39000000 [chrpos]" in the search box; click "go".
- Reference SNP clusters are retrieved.
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