User Question 3: Generate an integrated variation map with ref SNPs, Mitelman breakpoints and OMIM disease information
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| Sample User Question
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Generate an integrated variation map with ref SNPs, Mitelman breakpoints and OMIM diseases for chromosome 17;
region 7773,00-7792,000 bp. What gene(s) have you found in this region?
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| Flow Chart |
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- Map Viewer - Create an integrated genetic variation map
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| Step By Step Guide |
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- Map Viewer
- Click on "Homo sapens (Human)" appears under "mammals" node in the tree diagram
- Click on chromosome 17
- Specify the region by entering "7773,000" and "7792,000" respectively in the "Region Shown" boxes appear in the left side bar
- Click on "Go" button
- Click on "Map and Options" (appears at left side bar)
- A new pop up window will appear, Select "Variation", "Mitelman Breakpoints" and "OMIM/Morbid Diseases" from "Available Maps" section
- Click on "ADD" button to include the selected map options into "Maps Displayed (left to right)" box.
- Select "Variation" in "Maps Displayed (left to right)" box and Click on "Make Master/Move to Bottom" button
- Click on "Apply" button
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| Additional Notes |
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Only master map will display detailed information in the map viewer. In order to obtain detailed information for Mitelman Break Points and/or
OMIM diseases, make each variation type as a master map.
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