Molecular Structure Viewing
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References

Articles
  1. Chen J, Anderson JB, DeWeese-Scott C, Fedorova ND, Geer LY, He S, Hurwitz DI, Jackson JD, Jacobs AR, Lanczycki CJ, Liebert CA, Liu C, Madej T, Marchler-Bauer A, Marchler GH, Mazumder R, Nikolskaya AN, Rao BS, Panchenko AR, Shoemaker BA, Simonyan V, Song JS, Thiessen PA, Vasudevan S, Wang Y, Yamashita RA, Yin JJ, Bryant SH. MMDB: Entrez's 3D-structure database. Nucleic Acids Res. 2003 Jan 1;31(1):474-7.

  2. Wang Y, Anderson JB, Chen J, Geer LY, He S, Hurwitz DI, Liebert CA, Madej T, Marchler GH, Marchler-Bauer A, Panchenko AR, Shoemaker BA, Song JS, Thiessen PA, Yamashita RA, Bryant SH. MMDB: Entrez's 3D-structure database. Nucleic Acids Res. 2002 Jan 1;30(1):249-52.

  3. Wang Y, Bryant S, Tatusov R, Tatusova T. Links from genome proteins to known 3-D structures.Genome Res. 2000 Oct;10(10):1643-7.

  4. Wang Y, Geer LY, Chappey C, Kans JA, Bryant SH. Cn3D: sequence and structure views for Entrez. Trends Biochem Sci 2000 Jun;25(6):300-2.

  5. Gibrat, J-F., Madej, T., Bryant, S.H. Surprising similarities in structure comparison. Current Opinion in Structural Biology 1996; 6:377-385.

  6. Madej, T., Gibrat, J-F., Bryant, S.H. Threading a database of protein cores. Proteins 1995; 23:356-369.

  7. Chakrabarti S, Lanczycki CJ, Panchenko AR, Przytycka TM, Thiessen PA, Bryant SH. Refining multiple sequence alignments with conserved core regions. Nucleic Acids Res. 2006 May 17;34(9):2598-606.

  8. Kann MG, Thiessen PA, Panchenko AR, Schaffer AA, Altschul SF, Bryant SH. A structure-based method for protein sequence alignment. Bioinformatics. 2005 Apr 15;21(8):1451-6. Epub 2004 Dec 21.

  9. Marchler-Bauer A, Anderson JB, Cherukuri PF, DeWeese-Scott C, Geer LY, Gwadz M, He S, Hurwitz DI, Jackson JD, Ke Z, Lanczycki CJ, Liebert CA, Liu C, Lu F, Marchler GH, Mullokandov M, Shoemaker BA, Simonyan V, Song JS, Thiessen PA, Yamashita RA, Yin JJ, Zhang D, Bryant SH. CDD: a Conserved Domain Database for protein classification. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D192-6.

  10. Wheeler DL, Barrett T, Benson DA, Bryant SH, Canese K, Chetvernin V, Church DM, DiCuccio M, Edgar R, Federhen S, Geer LY, Helmberg W, Kapustin Y, Kenton DL, Khovayko O, Lipman DJ, Madden TL, Maglott DR, Ostell J, Pruitt KD, Schuler GD, Schriml LM, Sequeira E, Sherry ST, Sirotkin K, Souvorov A, Starchenko G, Suzek TO, Tatusov R, Tatusova TA, Wagner L, Yaschenko E. Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D173-80.

  11. Lyon JA, Tennant MR, Danielson B. Introducing Molecular Structure Databases: The Protein Data Bank and the Molecular Modeling Database. Journal of Electronic Resources in Medical Libraries. In Press

Web Sites

Structures
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Revised 07/27/2007