Further Reading on Special Purpose Resources
NCBI Databases - Data Flow and Processing
SKY/M-FISH and CGH
- Knutsen T, Gobu V, Knaus R, Padilla-Nash H, Augustus M, Strausberg RL, Kirsch IR, Sirotkin K, Ried T. The interactive online SKY/M-FISH & CGH Database and the Entrez Cancer Chromosomes search database: Linkage of chromosomal aberrations with the genome sequence. Genes Chromosomes Cancer. 2005 Sep;44(1):52-64. [Author Manuscript from PubMed Central].
- Liehr T, Starke H, Weise A, Lehrer H, Claussen U. Multicolor FISH probe sets and their applications. Histol Histopathol. 2004 Jan;19(1):229-37. [PubMed Abstract]
- Knutsen T, Gobu V, Knaus R, Ried T, Sirotkin K. The SKY/CGH Database for Spectral Karyotyping and Comparative Genomic Hybridization Data. NCBI Handbook Available online: http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=handbook.chapter.ch10
- Knutsen T, Gobu V, Knaus R, Padilla-Nash H, Augustus M, Shenmen C, Greenhut S, Schrock E, Kriebel J, Plotkin J, Kirsch IR, Ostell J, Sirotkin K, Ried T. The NCI and NCBI interactive online database for chromosome aberrations detected by SKY/M-FISH and CGH.
Proceedings of the AACR, Volume 44, 1st ed., March 2003.
- Knutsen T, Augustus M, Gobu V, Padilla-Nash H, Schröck E, et al. The NCI and NCBI SKY/CGH Interactive Online Database. Program number 299. American Society of Human Genetics 51st Annual Meeting, 2001. [Meeting Abstract]
- Knutsen T, Ried T. SKY: A comprehensive diagnostic and research tool. A review of the first 300 published cases. J Assoc Genet Technol 26:3-15, 2000
- McNeil N, Ried T. Novel molecular cytogenetic techniques for identifying complex chromosomal rearrangements: technology and applications in molecular medicine. Expert Rev Mol Med. 2000 Sep 14;2000:1-14. [PubMed Abstract].
Infectious Disease Resources
- Ghedin E, Sengamalay NA, Shumway M, Zaborsky J, Feldblyum T, et al. Large-scale sequencing of human influenza reveals the dynamic nature of viral genome evolution. Nature. 2005 Oct 20;437(7062):1162-6. [PubMed Abstract].
- Wheeler, David. HIV Protein-Interaction Database. NCBI News. 2004 Spring. [Full text].
- Rozanov M, Plikat U, Chappey C, Kochergin A, Tatusova T. A web-based genotyping resource for viral sequences. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W654-9. [Full text from PubMed Central].
- Bao Y, Federhen S, Leipe D, Pham V, Resenchuk S, Rozanov M, Tatusov R, Tatusova T. National Center for Biotechnology Information viral genomes project. J Virol. 2004 Jul;78(14):7291-8. [Full text from PubMed Central].
Immunology Resources including dbMHC
- Gourraud PA, Feolo M, Hoffman D, Helmberg W, Cambon-Thomsen A. The dbMHC microsatellite portal: a public resource for the storage and display of MHC microsatellite information. Tissue Antigens. 2006 May;67(5):395-401. [PubMed Abstract]
- Blumenfeld OO, Patnaik SK. Allelic genes of blood group antigens: a source of human mutations and cSNPs documented in the Blood Group Antigen Gene Mutation Database. Human Mutation. 2004 Jan; 23(1):8-16. [PubMed Abstract]
- Helmberg W, Dunivin R, Feolo M. The sequencing-based typing tool of dbMHC: typing highly polymorphic gene sequences. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W173-5. [Full text from PubMed Central].
- Helmberg W, Dunivin R, Feolo M. The reagent database at dbMHC. Tissue Antigens. 2004 Feb;63(2):142-8. [PubMed Abstract].
- Kitts, Adrienne; Feolo, Michael; Helmberg, Wolfgang. The Major Histocompatibility Complex Database, dbMHC. NCBI Handbook Available online: http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=handbook.chapter.ch11
- Feolo M, Helmberg W, Sherry S, Maglott DR. NCBI genetic resources supporting immunogenetic research. Rev Immunogenet. 2000;2(4):461-7. [PubMed Abstract]
Clones
- Jang W, Yonescu R, Knutsen T, Brown T, Reppert T, et al. Linking the human cytogenetic map with nucleotide sequence: the CCAP clone set. Cancer Genet Cytogenet. 2006 Jul 15;168(2):89-97.
[PubMed Abstract]
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