Protein Analysis
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Sequence Retrieval System (SRS)

-for ExPASY Databases such as SWISS_PROT, TREMBL, TREMBL_NEW, SWISS2D PROSITE, PROSITEDOC and ENZYME-

SRSWWW is a World Wide Web interface to the Sequence Retrieval System (SRS).
  • It supports HTML3 and lesser versions of HTML.
  • A user ID is created to keep the state for the whole session.
  • A SRS session is started by clicking on the 'Start' button in the SRS home page.

The six header buttons which contain links to other SRSWWW pages.
'Top Page'
  • Links to the start page of the SRSWWW. Click Continue, to preceed to 'Query Form' page.
  • Used to select the one or more databases to be searched. Come back here for a change in databases.
    • The database names are linked to an information page.
    • The data fields of the database can be browsed directly.
'Query Form'
  • The selected databases is/are listed at the top of the page.
  • 'Query' column. By using the operators "&" (= AND), "!" (= NOT), "|" (= OR) one can use more than one search expression in every 'Query' input field. A wildcard is optional.
  • 'Include fields in output'.
  • Click 'Do Query' to start the query. The 'Query Result' page comes up.
    • Shows query string, number of "hits" and found entries with check boxes and included fields.
    • Clicking on the entry opens the 'Single Entry' page (Complete entry in the databank).
    • Further options from here:
      • 'Link' - used to find the links between the found entries (the set) and the selected databanks, which are different from the databanks selected for the query search.
'Query Manager'
  • To store the queries done so far (includes 'Save', 'Delete', 'View' and 'Link' function).
  • To make further queries and links (includes 'Combine searches with the logical operators AND, OR or NOT).
'View Manager'
  • To define how to look at the query results by using predefined 'Views' or creating your own 'Views' (for more information on 'Creating a View', see Help).
'Databanks'
  • Information about the database release version number, the number of entries, the indexing date, the group and an availability flag.
'Help'
  • Most of the information about the databanses and their fields description are available through hypertext links.

Protein Analysis
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Revised 07/24/2003