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Structures
module of the MLA course on Introduction to Molecular Biology Information
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References

Articles

  • Molecular Modeling Database (MMDB)
    • Wang Y, Addess KJ, Chen J, Geer LY, He J, He S, Lu S, Madej T, Marchler-Bauer A, Thiessen PA, Zhang N, Bryant SH. 2007. MMDB: annotating protein sequences with Entrez's 3D-structure database. Nucleic Acids Res. Jan;35(Database issue):D298-300. Epub 2006 Nov 29..   PubMed;  full text

    • Chen J, Anderson JB, DeWeese-Scott C, Fedorova ND, Geer LY, He S, Hurwitz DI, Jackson JD, Jacobs AR, Lanczycki CJ, Liebert CA, Liu C, Madej T, Marchler-Bauer A, Marchler GH, Mazumder R, Nikolskaya AN, Rao BS, Panchenko AR, Shoemaker BA, Simonyan V, Song JS, Thiessen PA, Vasudevan S, Wang Y, Yamashita RA, Yin JJ, Bryant SH. 2003. MMDB: Entrez's 3D-structure database. Nucleic Acids Res. 31(1):474-477 (January).   PubMed;  full text


  • Conserved Domain Database (CDD)
    • Marchler-Bauer A, Anderson JB, Derbyshire MK, DeWeese-Scott C, Gonzales NR, Gwadz M, Hao L, He S, Hurwitz DI, Jackson JD, Ke Z, Krylov D, Lanczycki CJ, Liebert CA, Liu C, Lu F, Lu S, Marchler GH, Mullokandov M, Song JS, Thanki N, Yamashita RA, Yin JJ, Zhang D, Bryant SH. 2007. CDD: a conserved domain database for interactive domain family analysis. Nucleic Acids Res. Jan;35(Database issue):D237-40. Epub 2006 Nov 29.   PubMed;  full text

    • Marchler-Bauer A, Panchenko AR, Shoemaker BA, Thiessen PA, Geer LY, Bryant SH. 2002. CDD: a database of conserved domain alignments with links to domain three-dimensional structure. Nucleic Acids Res. 30(1):281-283 (January).   PubMed;  full text


  • Cn3D
    • Wang Y, Geer LY, Chappey C, Kans JA, Bryant SH. 2000. Cn3D: sequence and structure views for Entrez. Trends Biochem Sci. 25(6):300-302 (June).   PubMed
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Revised 11/06/2007