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Genomes and Maps: Title slide/table of contents
What is a Genome?
Entrez Genomes
Sample Prokaryotic Genome
Sample Eukaryotic Genome
Sequencing and assembly of a genome (NHGRI video)
Genome Sequencing: High Throughput Genomic Sequences (HTGs)
Genome Assembly
Genome Annotation
Ongoing Research and Discoveries
Searching Genomes
Map Quest
(Demo: Maryland → Rockville)
Map Viewer
(Demo: human chromosome 3 → MLH1)
Viewing the genomic context of the human MLH1 gene for colon cancer
Types of Maps
cytogenetic map
cytogenetic banding nomenclature
genetic map
physical map
RH map
YAC map
sequence map
Why All These Maps?
How Can the Different Maps be Used?
Mastery Exercise
(download genomic DNA sequence for PER2 gene, including the promoter region)
Promoter Region: Tip
Summary
When to search Entrez Genomes vs. Entrez Nucleotides?
Compare Entrez Nucleotides and Entrez Genomes
(
Saccharomyces cerevisiae
)
Caveats in Searching Entrez Genomes
User Questions
References
Slide List for This Module
Genomes and Maps
Revised 11/07/2007
