A O M P K Z Y Q V D R L B C E F G H S N U J X I T W phy: a o m p k z y - - - - - - - - - - - - - - - - - - - - 10 aompkzy------------------- DPH5 [J] COG1798 Diphthamide biosynthesis methyltransferase DPH5 - 11 aompkzy------------------- DPH2 [J] COG1736 Diphthamide synthase subunit DPH2 - 10 aompkzy------------------- TIF6 [J] COG1976 Eukaryotic translation initiation factor 6 (EIF6) - 10 aompkzy------------------- NOP1 [J] COG1889 Fibrillarin-like rRNA methylase - 11 aompkzy------------------- NMD3 [J] COG1499 NMD protein affecting ribosome stability and mRNA decay - 14 aompkzy------------------- - [J] COG2016 PUA domain (predicted RNA-binding domain) - 10 aompkzy------------------- - [J] COG2260 Predicted Zn-ribbon RNA-binding protein - 10 aompkzy------------------- - [J] COG1500 Predicted exosome subunit - 12 aompkzy------------------- SIK1 [J] COG1498 Protein implicated in ribosomal biogenesis, Nop56p homolog - 10 aompkzy------------------- GAR1 [J] COG3277 RNA-binding protein involved in rRNA processing - 10 aompkzy------------------- POP4 [J] COG1588 RNAse P protein subunit P29 - 10 aompkzy------------------- RPR2 [J] COG2023 RNAse P protein subunit RPR2 - 13 aompkzy------------------- RPP1A [J] COG2058 Ribosomal protein L12E/L44/L45/RPP1/RPP2 - 11 aompkzy------------------- RPL15A [J] COG1632 Ribosomal protein L15E - 11 aompkzy------------------- RPL18A [J] COG1727 Ribosomal protein L18E - 11 aompkzy------------------- RPL19A [J] COG2147 Ribosomal protein L19E - 11 aompkzy------------------- RPL21A [J] COG2139 Ribosomal protein L21E - 12 aompkzy------------------- RPL24A [J] COG2075 Ribosomal protein L24E - 11 aompkzy------------------- RPL31A [J] COG2097 Ribosomal protein L31E - 10 aompkzy------------------- RPL32 [J] COG1717 Ribosomal protein L32E - 11 aompkzy------------------- RPL43A [J] COG1997 Ribosomal protein L37AE/L43A - 11 aompkzy------------------- RPL37A [J] COG2126 Ribosomal protein L37E - 10 aompkzy------------------- RPL39 [J] COG2167 Ribosomal protein L39E - 11 aompkzy------------------- RPL40A [J] COG1552 Ribosomal protein L40E - 11 aompkzy------------------- RPL42A [J] COG1631 Ribosomal protein L44E - 11 aompkzy------------------- RPS17A [J] COG1383 Ribosomal protein S17E - 11 aompkzy------------------- RPS19A [J] COG2238 Ribosomal protein S19E (S16A) - 11 aompkzy------------------- RPS24A [J] COG2004 Ribosomal protein S24E - 10 aompkzy------------------- RPS31 [J] COG1998 Ribosomal protein S27AE - 11 aompkzy------------------- RPS27A [J] COG2051 Ribosomal protein S27E - 11 aompkzy------------------- RPS28A [J] COG2053 Ribosomal protein S28E/S33 - 11 aompkzy------------------- RPS1A [J] COG1890 Ribosomal protein S3AE - 11 aompkzy------------------- RPS4A [J] COG1471 Ribosomal protein S4E - 11 aompkzy------------------- RPS6A [J] COG2125 Ribosomal protein S6E (S10) - 12 aompkzy------------------- RPS8A [J] COG2007 Ribosomal protein S8E - 10 aompkzy------------------- EFB1 [J] COG2092 Translation elongation factor EF-1beta - 11 aompkzy------------------- GCD7 [J] COG1601 Translation initiation factor eIF-2, beta subunit/eIF-5 N-terminal domain - 10 aompkzy------------------- SUI2 [J] COG1093 Translation initiation factor eIF2alpha - 12 aompkzy------------------- SEN2 [J] COG1676 tRNA splicing endonuclease - 11 aompkzy------------------- RPB7 [K] COG1095 DNA-directed RNA polymerase subunit E' - 15 aompkzy------------------- RPB9 [K] COG1594 DNA-directed RNA polymerase subunit M/Transcription elongation factor TFIIS - 10 aompkzy------------------- RPC10 [K] COG1996 DNA-directed RNA polymerase subunit RPC10 (contains C4-type Zn-finger) - 10 aompkzy------------------- RPB5 [K] COG2012 DNA-directed RNA polymerase, subunit H, RpoH/RPB5 - 11 aompkzy------------------- RPB11 [K] COG1761 DNA-directed RNA polymerase, subunit L - 10 aompkzy------------------- RPB10 [K] COG1644 DNA-directed RNA polymerase, subunit N (RpoN/RPB10) - 11 aompkzy------------------- - [K] COG1813 Predicted transcription factor, homolog of eukaryotic MBF1 - 28 aompkzy------------------- LSM1 [K] COG1958 Small nuclear ribonucleoprotein (snRNP) homolog - 10 aompkzy------------------- EGD2 [K] COG1308 Transcription factor homologous to NACalpha-BTF3 - 26 aompkzy------------------- SUA7 [K] COG1405 Transcription initiation factor IIB - 20 aompkzy------------------- SPT15 [K] COG2101 Transcription initiation factor TFIID (TATA-binding protein) - 31 aompkzy------------------- CDC6 [LO] COG1474 Cdc6-related protein, AAA superfamily ATPase - 10 aompkzy------------------- PRI2 [L] COG2219 Eukaryotic-type DNA primase, large subunit - 11 aompkzy------------------- PRI1 [L] COG1467 Eukaryotic-type DNA primase, small subunit - 23 aompkzy------------------- MCM2 [L] COG1241 Predicted ATPase involved in replication control, Cdc46/Mcm family - 12 aompkzy------------------- - [L] COG1041 Predicted DNA modification methylase - 18 aompkzy------------------- - [L] COG1599 Replication factor A large subunit and related ssDNA-binding proteins - 11 aompkzy------------------- GimC [O] COG1382 Prefoldin, chaperonin cofactor - 10 aompkzy------------------- Sss1 [N] COG2443 Protein translocase subunit Sss1 - 10 aompkzy------------------- SEC65 [N] COG1400 Signal recognition particle 19 kDa protein - 10 aompkzy------------------- - [T] COG3642 Mn2+-dependent serine/threonine protein kinase - 10 aompkzy------------------- - [F] COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) - 10 aompkzy------------------- - [R] COG2118 DNA-binding protein - 14 aompkzy------------------- - [R] COG2102 Predicted ATPases of PP-loop superfamily - 10 aompkzy------------------- - [R] COG1084 Predicted GTPase - 11 aompkzy------------------- - [R] COG1163 Predicted GTPase - 11 aompkzy------------------- - [R] COG1094 Predicted RNA-binding protein (contains KH domains) - 11 aompkzy------------------- - [R] COG1537 Predicted RNA-binding proteins - 22 aompkzy------------------- - [R] COG2520 Predicted methyltransferase - 10 aompkzy------------------- - [R] COG1439 Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module - 10 aompkzy------------------- - [R] COG1245 RNase L inhibitor homolog, predicted ATPase - 11 aompkzy------------------- - [R] COG1412 Uncharacterized proteins of PilT N-term./Vapc superfamily - 10 aompkzy------------------- - [S] COG1990 Uncharacterized ACR