- 11 ----k---v--lb-e-g--------- PspC [KT] COG1983 Putative stress-responsive transcriptional regulator - 10 --------v----c-fg-s------- - [KT] COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain - 20 -----------lb-efg-s--j---- LytT [KT] COG3279 Response regulator of the LytR/AlgR family - 24 --------vdrlbcefghs--j---- LexA [KT] COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) - 7 ------------b-efgh-------- - [KT] COG3835 Sugar diacid utilization regulator - 14 -------q------efg----j--t- FhlA [KT] COG3604 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains - 12 -------q----b-ef---------- RocR [KT] COG3829 Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains - 13 -------q--r---efgh-n-j---- GlnE [OT] COG1391 Glutamine synthetase adenylyltransferase - 20 ao--k---v---b---g---u---t- CheC [NT] COG1776 Chemotaxis protein CheC, inhibitor of MCP methylation - 11 ao--k---v---b--fg----j--t- CheD [NT] COG1871 Chemotaxis protein; stimulates methylation of MCP proteins - 23 ao--k---v---b-efg-s-uj--t- CheB [NT] COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain - 26 ao--k---v---b-efg---uj--t- CheR [NT] COG1352 Methylase of chemotaxis methyl-accepting proteins - 18 --------------ef-----j---- FecR [PT] COG3712 Fe2+-dicitrate sensor, membrane component - 8 a-m-------rl---f---n------ - [T] COG3830 ACT domain-containing protein - 7 --------------efgh-------- ProQ [T] COG3109 Activator of osmoprotectant transporter ProP - 39 ------y---r--c-f-----j--t- CyaA [T] COG2114 Adenylate cyclase, family 3 (some proteins contain HAMP domain) - 39 --------vdr-bc-fg------it- SpoIIAA [T] COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) - 4 ----------------g----j---- ChrR [T] COG3806 Anti-sigma factor - 16 --------vdr-bc---------i-- RsbW [T] COG2172 Anti-sigma regulatory factor (Ser/Thr protein kinase) - 3 -------------c-f-----j---- - [T] COG3448 CBS-domain-containing membrane protein - 21 ----kz-q--rlb-efgh-nu----- CstA [T] COG1966 Carbon starvation protein, predicted membrane protein - 16 --------v---b-efghs-u---t- CsrA [T] COG1551 Carbon storage regulator (could also regulate swarming and quorum sensing) - 316 aom-k-y-vd-lbcefghs-uj--t- CheY [T] COG0784 CheY-like receiver domain - 9 --------vdrlb--------j---- DnrI [T] COG3629 DNA-binding transcriptional activator of the SARP family - 35 aom-kzyq-d--bc-fg--n-j---- AcuC [TQ] COG0123 Deacetylases, including yeast histone deacetylase and acetoin utilization protein - 65 aompkzy-vd-lbcefghsnuj---- ApaH [T] COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases - 31 -------q----b-efghsnujxit- DksA [T] COG1734 DnaK suppressor protein - 137 -------q-dr-bcefg-s--jx-t- Rtn [T] COG2200 EAL domain - 6 --------------efg----j---- - [T] COG3456 FHA-domain-containing protein - 27 ------y--dr-bc----s----i-- - [T] COG1716 FHA-domain-containing proteins - 72 aom----qvdr-bcefg----j---- FhlA [T] COG2203 GAF domain - 19 -o-p--y-v--lb-efghsn-j---- - [T] COG1956 GAF domain-containing protein - 221 -------qvdr-bcefg-s--j--t- - [T] COG2199 GGDEF domain - 20 ---------dr-b-e---sn------ MazF [T] COG2337 Growth inhibitor - 9 ---------d--b-e----n------ MazE [T] COG2336 Growth regulator - 39 -------qvdrlbcefghsnuj--tw SpoT [TK] COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases - 14 a------q-d--bc-fg----j---- ResE [T] COG2770 HAMP domain - 27 -------qvd--b--fg----j--t- - [T] COG2206 HD-GYP domain - 34 ------y------cefgh---j---- ArcB [T] COG2198 HPt domain - 16 ---------d-lb-e-gh-nu---t- LuxS [T] COG1854 LuxS protein involved in autoinducer AI2 synthesis - 4 --------------ef--s------- AmpE [T] COG3725 Membrane protein required for beta-lactamase induction - 10 aompkzy------------------- - [T] COG3642 Mn2+-dependent serine/threonine protein kinase - 6 --------------efgh-------- RseB [T] COG3026 Negative regulator of sigma E activity - 7 --------------efghs------- RseA [T] COG3073 Negative regulator of sigma E activity - 10 ---------dr--cefg---uj---- KdpD [T] COG2205 Osmosensitive K+ channel histidine kinase - 211 aom----qvdr-bcefg-s-uj-it- AtoS [T] COG2202 PAS/PAC domain - 11 a-----------bcefg--------- - [T] COG3438 Periplasmic ligand-binding sensor domain - 24 -----z-qvdrlbcefghsn-j---- PhoH [T] COG1702 Phosphate starvation-inducible protein PhoH, predicted ATPase - 18 a----z-q--r--cefghs-uj---- SixA [T] COG2062 Phosphohistidine phosphatase SixA - 4 -o----------bc------------ - [T] COG3848 Phosphohistidine swiveling domain - 8 --------v-----efgh-------- RseC [T] COG3086 Positive regulator of sigma E activity - 11 --------v-r-b--fg-s----i-- - [T] COG1875 Predicted ATPase related to phosphate starvation-inducible protein PhoH - 5 a-m-k--q------------------ - [T] COG2112 Predicted Ser/Thr protein kinase - 7 ------------bc-f-----j---- - [T] COG3300 Predicted integral membrane sensor domain - 7 -------------cef-----j---- - [T] COG3447 Predicted integral membrane sensor domain - 4 -------------c--g-s------- - [T] COG3292 Predicted periplasmic ligand-binding sensor domain - 5 a--------------fg----j---- - [T] COG3322 Predicted periplasmic ligand-binding sensor domain - 3 -------------c--g----j---- - [T] COG3452 Predicted periplasmic ligand-binding sensor domain - 5 ---------d---c-fg----j---- - [T] COG3614 Predicted periplasmic ligand-binding sensor domain - 15 --m-k-y--d----efg--------- CDC14 [T] COG2453 Predicted protein-tyrosine phosphatase - 7 ----------rlb------------- SdrC [T] COG3480 Predicted secreted protein containing a PDZ domain - 12 aompkzy--d-----f---------- RIO1 [T] COG1718 Predicted serine/threonine protein kinases - 9 --------v------fg---u---t- - [T] COG1639 Predicted signal transduction protein - 6 -------q----b---g--------- - [T] COG3434 Predicted signal transduction protein containing EAL and modified HD-GYP domains - 20 -----------lb--fg-s------- - [T] COG2972 Predicted signal transduction protein with a C-terminal ATPase domain - 7 a------q----b--fg--------- - [T] COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains - 33 ---p--yq-drlbc-f--s-uj-i-w PTC1 [T] COG0631 Protein serine/threonine phosphatases - 10 ------y--drl---f-----j---- - [T] COG2365 Protein tyrosine/serine phosphatase - 41 aom---yq-drlbcefghsnuj---- Wzb [T] COG0394 Protein-tyrosine-phosphatase - 9 -o----------b-efg----j---- PrkA [T] COG2766 Putative Ser protein kinase - 6 ------------b-e-g--------- LytS [T] COG3275 Putative regulator of cell autolysis - 7 aom-kzy------------------- - [T] COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain - 46 aompkzyqv----c-------j---- RAD55 [T] COG0467 RecA-superfamily ATPases implicated in signal transduction - 21 ---------drlb--f---------- CdaR [TQ] COG2508 Regulator of polyketide synthase expression - 57 -------q----b-efghsnujxit- AtoC [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains - 14 --------v---bc-fg---ujx-t- PleD [T] COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain - 122 ---------drlbcefghsn-j---- CitB [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - 6 ----------r----f-----j---- AmiR [T] COG3707 Response regulator with putative antiterminator output domain - 218 -------qvdrlbcefghsnujxi-- OmpR [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - 6 --------------efgh-------- - [T] COG3103 SH3 domain protein - 13 -----------lb-----sn-j--tw HprK [T] COG1493 Serine kinase of the HPr protein, regulates carbohydrate metabolism - 21 --------v-r-bc-fg----j-it- RsbU [TK] COG2208 Serine phosphatase RsbU, regulator of sigma subunit - 188 -o-p-zyq-drlbcefghs--j-i-w SPS1 [T] COG0515 Serine/threonine protein kinases - 518 aom---yqvdrlbcefghsnujxit- BaeS [T] COG0642 Signal transduction histidine kinase - 13 -----------lb-e-g--------- CitA [T] COG3290 Signal transduction histidine kinase regulating citrate/malate metabolism - 5 --------------e-gh-------- UhpB [T] COG3851 Signal transduction histidine kinase, glucose-6-phosphate specific - 10 --------------efgh-n------ NarQ [T] COG3850 Signal transduction histidine kinase, nitrate/nitrite-specific - 7 --------------efg-s--j---- NtrB [T] COG3852 Signal transduction histidine kinase, nitrogen specific - 6 --------------efg----j---- PtsP [T] COG3605 Signal transduction protein containing GAF and PtsI domains - 31 -o----y------cefghsn-jx--- BolA [T] COG0271 Stress-induced morphogen (activity unknown) - 17 --------v---bcefg--------- PspF [TK] COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain - 3 a----------lb------------- - [T] COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) - 5 --------------efgh-------- AhpA [T] COG3726 Uncharacterized membrane protein affecting hemolysin expression - 21 ---------d--bce----------- TerZ [T] COG2310 Uncharacterized proteins involved in stress response, homologs of TerZ and putative cAMP-binding protein CABP1 - 116 aompkzyq-drlbcefgh-n-jx--- UspA [T] COG0589 Universal stress protein UspA and related nucleotide-binding proteins - 86 ------yqvdrlbcefghsnuj-it- Crp [T] COG0664 cAMP-binding domains - Catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases - 76 ---------d-lb-efgh-n-j-itw PtsN [GT] COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type)