- 8 -------qv---b-efg--------- FlgM [KN] COG2747 Negative regulator of flagellin synthesis (anti-sigma-28 factor) - 25 -------qvdrlbcefghsnuj--t- Smf [LN] COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake - 65 -------q-----cefghsnujx--- TolC [MN] COG1538 Outer membrane protein - 24 -------q--r--cefghsnujx--- Ttg2A [N] COG1127 ABC-type exporter of toluene and related compounds, ATPase component - 12 --------------efghsnujx--- Ttg2D [N] COG2854 ABC-type exporter of toluene and related compounds, periplasmic component - 87 -o-pkz-qvdrlbcefghs--j--tw MalK [N] COG3839 ABC-type sugar transport systems, ATPase components - 25 aompkz-------------------- FlaB [N] COG1681 Archaeal flagellins - 45 -------q-d---cefghsnujxi-- ExbD [N] COG0848 Biopolymer transport protein - 46 --m----q-d---cefghsnujxi-- TolQ [N] COG0811 Biopolymer transport proteins - 4 --------------efg--------- CheZ [N] COG3143 Chemotaxis protein - 20 ao--k---v---b---g---u---t- CheC [NT] COG1776 Chemotaxis protein CheC, inhibitor of MCP methylation - 30 ao--k---vd--bcefg-s-uj--t- CheA [N] COG0643 Chemotaxis protein histidine kinase and related kinases - 11 ao--k---v---b--fg----j--t- CheD [NT] COG1871 Chemotaxis protein; stimulates methylation of MCP proteins - 23 ao--k---v---b-efg-s-uj--t- CheB [NT] COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain - 53 ao--k---v---bcefg-s-uj--t- CheW [N] COG0835 Chemotaxis signal transduction protein - 38 -om------dr---ef----uj---- BetA [N] COG2303 Choline dehydrogenase and related flavoproteins - 8 -------------c-fg-sn-j---- PilN [N] COG3166 Fimbrial assembly protein - 5 ---------------fg-sn------ PilO [N] COG3167 Fimbrial assembly protein - 5 ---------------fg-sn------ PilP [N] COG3168 Fimbrial assembly protein - 11 -------qv---b--fg---u---t- FlhF [N] COG1419 Flagellar GTP-binding protein - 12 -------qv-----efg---uj---- FlgH [N] COG2063 Flagellar basal body L-ring protein - 12 -------qv-----efg---uj---- FlgA [N] COG1261 Flagellar basal body P-ring biosynthesis protein - 51 -------qv---b-efg---uj--t- FlgE [N] COG1749 Flagellar basal body and hook proteins - 16 -------qv---b-efg---uj--t- FlgB [N] COG1815 Flagellar basal body protein - 16 -------qv---b-efg---uj--t- FlgC [N] COG1558 Flagellar basal body rod protein - 16 -------qv---b-efg---u---t- FliL [N] COG1580 Flagellar basal body-associated protein - 13 -------qv-----efg---uj--t- FlgI [N] COG1706 Flagellar basal-body P-ring protein - 8 ------------b-efg------i-- FliO [N] COG3190 Flagellar biogenesis protein - 10 --------v---b-efg------it- FliJ [N] COG2882 Flagellar biosynthesis chaperone - 24 -------qv---b-efg---uj-it- FliI [N] COG1157 Flagellar biosynthesis/type III secretory pathway ATPase - 5 --------------efg--------- - [N] COG3418 Flagellar biosynthesis/type III secretory pathway chaperone - 22 -------qv---b-efg---uj-it- FliF [N] COG1766 Flagellar biosynthesis/type III secretory pathway lipoprotein - 26 -------qv---b-efg---uj-it- FlhA [N] COG1298 Flagellar biosynthesis/type III secretory pathway protein - 17 --------v---b-efg---uj-it- FliH [N] COG1317 Flagellar biosynthesis/type III secretory pathway protein - 23 -------qv---b-efg---uj-it- FliP [N] COG1338 Flagellar biosynthesis/type III secretory pathway protein - 22 -------qv---b-efg---uj-it- FlhB [N] COG1377 Flagellar biosynthesis/type III secretory pathway protein - 23 -------qv---b-efg---uj-it- FliR [N] COG1684 Flagellar biosynthesis/type III secretory pathway protein - 22 -------qv---b-efg---uj-it- FliQ [N] COG1987 Flagellar biosynthesis/type III secretory pathway protein - 13 -------qv---b-efg---u---t- FliD [N] COG1345 Flagellar capping protein - 16 -------qv---b-efg---uj--t- FlgD [N] COG1843 Flagellar hook capping protein - 16 -------qv---b-efg---uj--t- FlgK [N] COG1256 Flagellar hook-associated protein - 16 -------qv---b-efg---uj--t- FliE [N] COG1677 Flagellar hook-basal body protein - 7 ------------b-efg--------- FliK [N] COG3144 Flagellar hook-length control protein - 17 -------qv---b-efg---uj--t- MotA [N] COG1291 Flagellar motor component - 25 -------qv---b-efg---uj--t- MotB [N] COG1360 Flagellar motor protein - 20 -------qv---b-efg---uj-it- FliG [N] COG1536 Flagellar motor switch protein - 15 -------qv---b-efg---uj--t- FliM [N] COG1868 Flagellar motor switch protein - 25 -------qv---b-efg---uj-it- FliN [N] COG1886 Flagellar motor switch/type III secretory pathway protein - 14 -------qv---b-efg---u---t- FliS [N] COG1516 Flagellar protein - 49 -------qv---b-efg---uj--t- FlgL [N] COG1344 Flagellin and related hook-associated proteins - 16 --------v--lb-efg--------- FlgJ [N] COG1705 Flagellum-specific muramidase - 5 ----------r----fg--------- ExeA [N] COG3267 General secretion pathway protein A - 4 -------q------e-g--------- GspC [N] COG3031 General secretion pathway protein C - 6 --------------efg-s--j---- GspK [N] COG3156 General secretion pathway protein K - 3 --------------efg--------- EtpM [N] COG3149 General secretion pathway protein M - 39 -------qvd---cefghsnuj-i-- GspD [N] COG1450 General secretory pathway protein D - 31 -------qvd-lbcefghsn-j-i-- HofF [N] COG1459 General secretory pathway protein F - 5 --------------efg----j---- GspL [N] COG3297 General secretory pathway protein L - 103 -------qvd--bcefghsnuj-i-- HofG [N] COG2165 General secretory pathway proteins G and H and related periplasmic/secreted proteins - 6 --------------efgh-------- CcmD [N] COG3114 Heme exporter protein D - 19 -------------cef-hsnuj---- FhaC [N] COG2831 Hemolysin activation/secretion protein - 81 -o----yqvdrlbcefghsnujxitw TlyC [N] COG1253 Hemolysins and related proteins containing CBS domains - 31 ----------r---efghsnujxi-- HtrB [N] COG1560 Lauroyl/myristoyl acyltransferase involved in lipid A biosynthesis - 18 -------q------efghsnujxi-- LpxK [N] COG1663 Lipid A biosynthesis protein LpxK, tetraacyldisaccharide-1-P 4'-kinase - 33 -------qvdrlbcefghsnujxitw LspA [N] COG0597 Lipoprotein signal peptidase - 27 -------q-drlb--fgh-----it- LytE [N] COG1388 LysM-repeat proteins and domains - 34 ------yqvdrlbcefghsnujxitw LepA [N] COG0481 Membrane GTPase LepA - 18 --m-k---vdr--cefghs--j---- - [NO] COG1585 Membrane protein implicated in regulation of membrane protease activity - 12 a--pkz-q----b--f-----j---- - [NO] COG1030 Membrane-bound serine protease (ClpP class) - 203 ao--k---vd--bcefg-s-uj--t- Tar [N] COG0840 Methyl-accepting chemotaxis protein - 26 ao--k---v---b-efg---uj--t- CheR [NT] COG1352 Methylase of chemotaxis methyl-accepting proteins - 31 -------------cef--s--j---- FimD [N] COG3188 PapC-like porin protein involved in fimbrial biogenesis - 38 ---------d---cef--s--j---- FimC [N] COG3121 PapD-like chaperone involved in fimbrial biogenesis - 19 a------------cefghs-ujxi-- TolB [N] COG0823 Periplasmic component of the Tol biopolymer transport system - 56 aompkz-qvdr-bcefghsnujxit- SppA [NO] COG0616 Periplasmic serine proteases (ClpP class) - 56 --------------ef--s------- FimA [N] COG3539 Pilin - 7 ---------------f-h---j---- PilA [N] COG3847 Pilin - 5 ---------------f--sn------ PilC [N] COG3419 Pilus tip-associated protein - 11 --------------efghs--j---- VapI [N] COG3093 Plasmid maintenance system antidote protein - 5 ----------------ghs--j---- HigB [N] COG3549 Plasmid maintenance system killer protein - 25 ----------r---efg-s--j---- ParE [N] COG3668 Plasmid stabilization system protein - 8 aompkz-------------------- FlaH [N] COG2874 Predicted ATPases involved in biogenesis of archaeal flagella - 33 -------qvd-lbcefghsnuj-i-- GspE [N] COG2804 Predicted ATPases involved in pili biogenesis, PilB homologs - 22 -------qvd---cefg-sn------ PilT [N] COG2805 Predicted ATPases involved in pili biogenesis, PilT homologs - 5 --------v---b---g-------t- - [N] COG1406 Predicted inhibitor of MCP methylation, homolog of CheC - 24 ---------drlbcefghsnujx--- TypA [N] COG1217 Predicted membrane GTPase involved in stress response - 7 --------------e-g---u----- FlgN [N] COG3417 Predicted periplasmic lipoprotein - 3 ---------------fg----j---- - [N] COG3489 Predicted periplasmic lipoprotein - 3 --------v----c------u----- - [N] COG1724 Predicted periplasmic or secreted lipoprotein - 6 -----------l-----h--u----w - [N] COG2503 Predicted secreted acid phosphatase - 31 -------q-drlbcefghsnujxitw SecG [N] COG1314 Preprotein translocase subunit - 35 -------qvdrlbcefghsnujxitw SecA [N] COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase) - 14 --m-----------efghsn-jx--- SecB [N] COG1952 Preprotein translocase subunit SecB - 35 -om-k--qvdr-bcefghsnujxit- SecD [N] COG0342 Preprotein translocase subunit SecD - 33 -------qvdrlbcefghsnujxitw SecE [N] COG0690 Preprotein translocase subunit SecE - 32 -om-k--qvdr-bcefghsnujxit- SecF [N] COG0341 Preprotein translocase subunit SecF - 44 aompkzyqvdrlbcefghsnujxitw SecY [N] COG0201 Preprotein translocase subunit SecY - 27 -------qv-rlb-efghsnujxit- YajC [N] COG1862 Preprotein translocase subunit YajC - 38 ------yqvdrlbcefghsnujxitw YidC [N] COG0706 Preprotein translocase subunit YidC - 4 ---------------fg--n-j---- Doc [N] COG3654 Prophage maintenance system killer protein - 51 -------qvdrlbcefghsnujxit- ClpP [NO] COG0740 Protease subunit of ATP-dependent Clp proteases - 10 aompkzy------------------- Sss1 [N] COG2443 Protein translocase subunit Sss1 - 6 -ompk--------------------- FlaC [N] COG3352 Putative archaeal flagellar protein C - 8 -ompk--------------------- FlaD [N] COG3351 Putative archaeal flagellar protein D/E - 5 -ompk--------------------- FlaF [N] COG3353 Putative archaeal flagellar protein F - 7 -ompk--------------------- FlaG [N] COG3354 Putative archaeal flagellar protein G - 10 --------------efgh-n-j---- TfoX [N] COG3070 Regulator of competence-specific genes - 31 ao-p-z-q-dr-bcefghsnujx--- TatC [N] COG0805 Sec-independent protein secretion pathway component TatC - 52 ao-p-z-q-dr-bcefghsnujx--- TatA [N] COG1826 Sec-independent protein secretion pathway components - 65 aompkzyqvdrlbcefghsnujxit- LepB [N] COG0681 Signal peptidase I - 37 aom-kz-qvd-lbcefghsnuj---- PppA [N] COG1989 Signal peptidase, cleaves prepilin-like proteins - 10 aompkzy------------------- SEC65 [N] COG1400 Signal recognition particle 19 kDa protein - 43 aompkzyqvdrlbcefghsnujxitw Ffh [N] COG0541 Signal recognition particle GTPase - 43 aompkzyqvdrlbcefghsnujxitw FtsY [N] COG0552 Signal recognition particle GTPase - 35 ao--kz--vd-lb--f-----j--tw Med [N] COG1744 Surface lipoprotein - 4 ---------------f--sn------ PilZ [N] COG3215 Type IV pilus assembly protein - 10 ------------------s-ujx--- VirB8 [N] COG3736 Type IV secretion system, component VirB8 - 5 ------------------s--j---- TrbF [N] COG3701 Type IV secretory pathway, TrbF components - 8 ------------------s-uj---- TrbL [N] COG3846 Type IV secretory pathway, TrbL components - 15 ------------------s-ujx--- VirB10 [N] COG2948 Type IV secretory pathway, VirB10 components - 48 aompkz----r----f-hs-ujx--- VirB11 [N] COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis - 7 ------------------s--jx--- VirB2 [N] COG3838 Type IV secretory pathway, VirB2 components (pilins) - 15 ------------------s-ujx--- VirB4 [N] COG3451 Type IV secretory pathway, VirB4 components - 8 ------------------s--jx--- VirB6 [N] COG3704 Type IV secretory pathway, VirB6 components - 17 ------------------s-ujx--- VirB9 [N] COG3504 Type IV secretory pathway, VirB9 components - 9 ------------------s-uj---- VirD2 [N] COG3843 Type IV secretory pathway, VirD2 components (relaxase) - 8 ------------------s-ujx--- VirD4 [N] COG3505 Type IV secretory pathway, VirD4 components - 9 -------qv---b--fg---u----- FlaG [N] COG1334 Uncharacterized flagellar protein FlaG - 8 aompkz-------------------- FlaJ [N] COG1955 Uncharacterized membrane component of archaeal flagella - 17 --------v----cefghs--j---- GumC [N] COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis - 6 ----------------ghsn------ PilF [N] COG3063 Uncharacterized protein involved in fimbrial biogenesis - 5 ---------------f-----j---- CpaB [N] COG3745 Uncharacterized protein involved in type IV pili biogenesis - 5 --------v---b-----------t- FlgEa [N] COG1582 Uncharacterized protein, possibly involved in motility