- 22 --m-k---vd-lb-efgh---j---- RsmC [J] COG2813 16S RNA G1207 methylase RsmC - 64 -------qvdrlbcefghsnujxit- RsuA [J] COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases - 21 a-mpkz-qvd--b-ef-----j---- LigT [J] COG1514 2'-5' RNA ligase - 59 aompkz-qvdr-bcefghsnujxit- MiaB [J] COG0621 2-methylthioadenine synthetase - 99 -o-pk-y-vdrlb-efgh-nujx--w RimL [J] COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins - 43 aompkzyqvdrlbcefghsnujxitw AlaS [J] COG0013 Alanyl-tRNA synthetase - 5 ---------drl---f-----j---- Aph [J] COG3231 Aminoglycoside phosphotransferase - 9 aompkz-------------------- GatE [J] COG2511 Archaeal Glu-tRNAGln amidotransferase subunit E (contains GAD domain) - 45 aompkzyqvdrlbcefghsnujxitw ArgS [J] COG0018 Arginyl-tRNA synthetase - 66 aom--zyqvdrlbc-f---nujxitw GatA [J] COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases - 33 aom--zyqvdrlbc-f---nujxitw GatB [J] COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) - 30 aom--z-qvdrlbc-f---nujxitw GatC [J] COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit - 34 ------yqvdrlbcefghsnujxitw AspS [J] COG0173 Aspartyl-tRNA synthetase - 40 aompkzy--d-lbce-ghs-----tw AsnS [J] COG0017 Aspartyl/asparaginyl-tRNA synthetases - 43 ao-pkzyqvdrlbcefghsnujxitw CysS [J] COG0215 Cysteinyl-tRNA synthetase - 17 ------yqvdrlb-efgh-n------ Dtd [J] COG1490 D-Tyr-tRNAtyr deacylase - 12 aompkzy--------------j---- DYS1 [J] COG1899 Deoxyhypusine synthase - 49 aompkzyqvdrlbcefghsnujxitw KsgA [J] COG0030 Dimethyladenosine transferase (rRNA methylation) - 10 aompkzy------------------- DPH5 [J] COG1798 Diphthamide biosynthesis methyltransferase DPH5 - 11 aompkzy------------------- DPH2 [J] COG1736 Diphthamide synthase subunit DPH2 - 10 aompkzy------------------- TIF6 [J] COG1976 Eukaryotic translation initiation factor 6 (EIF6) - 10 aompkzy------------------- NOP1 [J] COG1889 Fibrillarin-like rRNA methylase - 78 aompkzyqvdrlbcefghsnujxitw TufB [JE] COG0050 GTPases - translation elongation factors - 71 aompkzyqvdrlbcefghsnujxitw GlnS [J] COG0008 Glutamyl- and glutaminyl-tRNA synthetases - 25 -------qv--lbcefghsnujxi-- GlyQ [J] COG0752 Glycyl-tRNA synthetase, alpha subunit - 25 -------qv--lbcefghsnujxi-- GlyS [J] COG0751 Glycyl-tRNA synthetase, beta subunit - 19 aompkzy--dr-------------tw GRS1 [J] COG0423 Glycyl-tRNA synthetase, class II - 49 aompkzyqvdrlbcefghsnujxitw HisS [J] COG0124 Histidyl-tRNA synthetase - 3 a-m----q------------------ - [J] COG1431 Homologs of the eukaryotic argonaute protein, possible role in translation - 44 aompkzyqvdrlbcefghsnujxitw IleS [J] COG0060 Isoleucyl-tRNA synthetase - 45 aompkzyqvdrlbcefghsnujxitw LeuS [J] COG0495 Leucyl-tRNA synthetase - 14 aompkz---------------jx-t- LysS [J] COG1384 Lysyl-tRNA synthetase class I - 35 ------yqvdrlbcefghsnu--i-w LysU [J] COG1190 Lysyl-tRNA synthetase class II - 51 aompkzyqvdrlbcefghsnujxitw Map [J] COG0024 Methionine aminopeptidase - 39 ------yqvdrlbcefghsnujxitw Fmt [J] COG0223 Methionyl-tRNA formyltransferase - 45 aompkzyqvdrlbcefghsnujxitw MetG [J] COG0143 Methionyl-tRNA synthetase - 25 aomp--y-------efghsn-jx-t- FtsJ [J] COG0293 Methyltransferase involved in cell division - 37 -------qvdrlbcefghsnujxitw Def [J] COG0242 N-formylmethionyl-tRNA deformylase - 11 aompkzyq------------------ TRM1 [J] COG1867 N2,N2-dimethylguanosine tRNA methyltransferase - 11 aompkzy------------------- NMD3 [J] COG1499 NMD protein affecting ribosome stability and mRNA decay - 14 aompkzy------------------- - [J] COG2016 PUA domain (predicted RNA-binding domain) - 11 aompkzyq------------------ eRF1 [J] COG1503 Peptide chain release factor eRF1 - 34 ------yqvdrlbcefghsnujxitw Pth [J] COG0193 Peptidyl-tRNA hydrolase - 44 aompkzyqvdrlbcefghsnujxitw PheS [J] COG0016 Phenylalanyl-tRNA synthetase alpha subunit - 3 a-m----------------------- - [J] COG2024 Phenylalanyl-tRNA synthetase alpha subunit, archaeal type - 44 aompkzyqvdrlbcefghsnujxitw PheT [J] COG0072 Phenylalanyl-tRNA synthetase beta subunit - 30 -------qvdrlbcefghsnujxit- Pnp [J] COG1185 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) - 9 aompkz-------------------- - [J] COG2263 Predicted RNA methylase - 9 aompkz-------------------- - [J] COG1491 Predicted RNA-binding protein - 7 a-mpkz-------------------- - [J] COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) - 20 aom-kz-----lb-efghsn------ - [J] COG1534 Predicted RNA-binding protein containing KH domain, possibly ribosomal protein - 14 aompkzyqv-r--------------- GCD14 [J] COG2519 Predicted SAM-dependent methyltransferase involved in tRNA-Met maturation - 10 aompkzy------------------- - [J] COG2260 Predicted Zn-ribbon RNA-binding protein - 9 aompkz-------------------- - [J] COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation - 19 aompkzy--d---c-fg----j---- YSH1 [J] COG1236 Predicted exonuclease of the beta-lactamase fold involved in RNA processing - 7 aom-kz-------------------- - [J] COG1325 Predicted exosome subunit - 10 aompkzy------------------- - [J] COG1500 Predicted exosome subunit - 9 aompkz-------------------- - [J] COG1258 Predicted pseudouridylate synthase - 26 ---------drlbcefghsnuj-i-w CspR [J] COG0219 Predicted rRNA methylase (SpoU class) - 18 a------qv-rlbc------ujx-tw - [J] COG1189 Predicted rRNA methylases - 56 aompk-yqvdrlbcefghsnujxitw HemK [J] COG2890 Predicted rRNA or tRNA methylase - 10 --------v--lb-----------tw - [J] COG2868 Predicted ribosomal protein - 5 -om-k--------------------- - [J] COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain - 38 ------yqvdrlbcefghsnujxitw TrmU [J] COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain - 44 aompkzyqvdrlbcefghsnujxitw ProS [J] COG0442 Prolyl-tRNA synthetase - 34 ------yqvdrlbcefghsnujxitw PrfA [J] COG0216 Protein chain release factor A - 39 ------yqvdrlbcefghsnujxit- PrfB [J] COG1186 Protein chain release factor B - 8 a-m-kzy------------------- IMP4 [J] COG2136 Protein containing the IMP4 domain present in small nuclear ribonucleoproteins; implicated in RNA processing - 12 aompkzy------------------- SIK1 [J] COG1498 Protein implicated in ribosomal biogenesis, Nop56p homolog - 6 a-m-kzy------------------- NIP7 [J] COG1374 Protein involved in ribosomal biogenesis, contains PUA domain - 42 aompkzyqvdrlbcefghsnujxitw TruB [J] COG0130 Pseudouridine synthase - 44 aompk-yqvdrlbcefghsnujxitw TruA [J] COG0101 Pseudouridylate synthase (tRNA psi55) - 97 ------yqvdrlbcefghsnujxitw RluA [J] COG0564 Pseudouridylate synthases, 23S RNA-specific - 53 aompkzyqvdrlbcefghsn-jxitw SUA5 [J] COG0009 Putative translation factor (SUA5) - 74 -o--kzyqvdrlbcefghsnuj---- TdcF [J] COG0251 Putative translation initiation inhibitor - 8 aompk--------------------- - [J] COG1549 Queuine tRNA-ribosyltransferases, contain PUA domain - 38 aompkz-qvd-lbcefghsnujxit- Tgt [J] COG0343 Queuine/archaeosine tRNA-ribosyltransferase - 9 a-mpkzy------------------- RRP4 [J] COG1097 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) - 10 aompkzy------------------- GAR1 [J] COG3277 RNA-binding protein involved in rRNA processing - 12 a--pkzy--d----ef---------- KptA [J] COG1859 RNA:NAD 2'-phosphotransferase - 10 aompkzy------------------- POP4 [J] COG1588 RNAse P protein subunit P29 - 10 aompkzy------------------- RPR2 [J] COG2023 RNAse P protein subunit RPR2 - 32 --------vdrlbcefghsnujxitw RnpA [J] COG0594 RNase P protein component - 8 aom-kzy------------------- POP5 [J] COG1369 RNase P subunit P14 and its archaeal orthologs - 28 a-mpkzyq-dr-b-efghsn-jx--- Rph [J] COG0689 RNase PH - 9 a-mpkzy------------------- - [J] COG2123 RNase PH-related exoribonuclease - 17 ------y---r--cefghs--jx--- Rnd [J] COG0349 Ribonuclease D - 6 --------------e--h---j---- Rna [J] COG3719 Ribonuclease I - 8 aom-kzy------------------- - [J] COG1603 Ribonuclease P subunit Rpp30 - 36 -o--kz-qv-r-bcefghsnujxi-- CafA [J] COG1530 Ribonucleases G and E - 21 aompkzy-v--lb------------- RPL8A [J] COG1358 Ribosomal protein HS6-type (S12/L30/L7a) - 45 aompkzyqvdrlbcefghsnujxitw RplA [J] COG0081 Ribosomal protein L1 - 45 aompkzyqvdrlbcefghsnujxitw RplJ [J] COG0244 Ribosomal protein L10 - 46 aompkzyqvdrlbcefghsnujxitw RplK [J] COG0080 Ribosomal protein L11 - 22 -------qvd-lbcefghsnuj---- PrmA [J] COG2264 Ribosomal protein L11 methylase - 13 aompkzy------------------- RPP1A [J] COG2058 Ribosomal protein L12E/L44/L45/RPP1/RPP2 - 45 aompkzyqvdrlbcefghsnujxitw RplM [J] COG0102 Ribosomal protein L13 - 45 aompkzyqvdrlbcefghsnujxitw RplN [J] COG0093 Ribosomal protein L14 - 7 --m-kzy------------------- RPL14A [J] COG2163 Ribosomal protein L14E - 44 aompkzyqvdrlbcefghsnujxitw RplO [J] COG0200 Ribosomal protein L15 - 11 aompkzy------------------- RPL15A [J] COG1632 Ribosomal protein L15E - 44 aompkzyqvdrlbcefghsnujxitw RplP [J] COG0197 Ribosomal protein L16/L10E - 34 ------yqvdrlbcefghsnujxitw RplQ [J] COG0203 Ribosomal protein L17 - 43 aompkzyqvdrlbcefghsnujxitw RplR [J] COG0256 Ribosomal protein L18 - 11 aompkzy------------------- RPL18A [J] COG1727 Ribosomal protein L18E - 34 ------yqvdrlbcefghsnujxitw RplS [J] COG0335 Ribosomal protein L19 - 11 aompkzy------------------- RPL19A [J] COG2147 Ribosomal protein L19E - 45 aompkzyqvdrlbcefghsnujxitw RplB [J] COG0090 Ribosomal protein L2 - 33 -------qvdrlbcefghsnujxitw RplT [J] COG0292 Ribosomal protein L20 - 8 a-m-kzy------------------- RPL20A [J] COG2157 Ribosomal protein L20A (L18A) - 33 -------qvdrlbcefghsnujxitw RplU [J] COG0261 Ribosomal protein L21 - 11 aompkzy------------------- RPL21A [J] COG2139 Ribosomal protein L21E - 45 aompkzyqvdrlbcefghsnujxitw RplV [J] COG0091 Ribosomal protein L22 - 43 aompkzyqvdrlbcefghsnujxitw RplW [J] COG0089 Ribosomal protein L23 - 44 aompkzyqvdrlbcefghsnujxitw RplX [J] COG0198 Ribosomal protein L24 - 12 aompkzy------------------- RPL24A [J] COG2075 Ribosomal protein L24E - 28 -------qvdr-bcefghsnujxit- RplY [J] COG1825 Ribosomal protein L25 (general stress protein Ctc) - 34 ------yqvdrlbcefghsnujxitw RpmA [J] COG0211 Ribosomal protein L27 - 34 ------yqvdrlbcefghsnujxitw RpmB [J] COG0227 Ribosomal protein L28 - 44 aompkzyqvdrlbcefghsnujxitw RpmC [J] COG0255 Ribosomal protein L29 - 44 aompkzyqvdrlbcefghsnujxitw RplC [J] COG0087 Ribosomal protein L3 - 37 aompkzyqvdrlb-efghsn-jx-t- RpmD [J] COG1841 Ribosomal protein L30/L7E - 7 a-m-kzy------------------- RPL30 [J] COG1911 Ribosomal protein L30E - 43 -------qvdrlbcefghsnujxitw RpmE [J] COG0254 Ribosomal protein L31 - 11 aompkzy------------------- RPL31A [J] COG2097 Ribosomal protein L31E - 32 ------yqvd-lbcefghsnujxitw RpmF [J] COG0333 Ribosomal protein L32 - 10 aompkzy------------------- RPL32 [J] COG1717 Ribosomal protein L32E - 40 ------yqvdrlbcefghsnujxitw RpmG [J] COG0267 Ribosomal protein L33 - 34 ------yqvdrlbcefghsnujxitw RpmH [J] COG0230 Ribosomal protein L34 - 7 --m-kzy------------------- RPL34A [J] COG2174 Ribosomal protein L34E - 34 ------yqvdrlbcefghsnujxitw RpmI [J] COG0291 Ribosomal protein L35 - 5 ----kzy------------------- - [J] COG2451 Ribosomal protein L35AE/L33A - 38 ------yqvdrlbcefghsnujxitw RpmJ [J] COG0257 Ribosomal protein L36 - 11 aompkzy------------------- RPL43A [J] COG1997 Ribosomal protein L37AE/L43A - 11 aompkzy------------------- RPL37A [J] COG2126 Ribosomal protein L37E - 10 aompkzy------------------- RPL39 [J] COG2167 Ribosomal protein L39E - 45 aompkzyqvdrlbcefghsnujxitw RplD [J] COG0088 Ribosomal protein L4 - 11 aompkzy------------------- RPL40A [J] COG1552 Ribosomal protein L40E - 11 aompkzy------------------- RPL42A [J] COG1631 Ribosomal protein L44E - 45 aompkzyqvdrlbcefghsnujxitw RplE [J] COG0094 Ribosomal protein L5 - 45 aompkzyqvdrlbcefghsnujxitw RplF [J] COG0097 Ribosomal protein L6 - 35 ------yqvdrlbcefghsnujxitw RplL [J] COG0222 Ribosomal protein L7/L12 - 33 -------qvdrlbcefghsnujxitw RplI [J] COG0359 Ribosomal protein L9 - 33 ------yqvdrlbcefghsnujxit- RpsA [J] COG0539 Ribosomal protein S1 - 9 ------y-vd-lb------------- VacB [J] COG1098 Ribosomal protein S1 domains - 45 aompkzyqvdrlbcefghsnujxitw RpsJ [J] COG0051 Ribosomal protein S10 - 45 aompkzyqvdrlbcefghsnujxitw RpsK [J] COG0100 Ribosomal protein S11 - 46 aompkzyqvdrlbcefghsnujxitw RpsL [J] COG0048 Ribosomal protein S12 - 45 aompkzyqvdrlbcefghsnujxitw RpsM [J] COG0099 Ribosomal protein S13 - 49 aompkzyqvdrlbcefghsnujxitw RpsN [J] COG0199 Ribosomal protein S14 - 45 aompkzyqvdrlbcefghsnujxitw RpsO [J] COG0184 Ribosomal protein S15P/S13E - 34 ------yqvdrlbcefghsnujxitw RpsP [J] COG0228 Ribosomal protein S16 - 45 aompkzyqvdrlbcefghsnujxitw RpsQ [J] COG0186 Ribosomal protein S17 - 11 aompkzy------------------- RPS17A [J] COG1383 Ribosomal protein S17E - 35 ------yqvdrlbcefghsnujxitw RpsR [J] COG0238 Ribosomal protein S18 - 44 aompkzyqvdrlbcefghsnujxitw RpsS [J] COG0185 Ribosomal protein S19 - 11 aompkzy------------------- RPS19A [J] COG2238 Ribosomal protein S19E (S16A) - 45 aompkzyqvdrlbcefghsnujxitw RpsB [J] COG0052 Ribosomal protein S2 - 33 -------qvdrlbcefghsnujxitw RpsT [J] COG0268 Ribosomal protein S20 - 29 -------q---lbcefghsnujxitw RpsU [J] COG0828 Ribosomal protein S21 - 11 aompkzy------------------- RPS24A [J] COG2004 Ribosomal protein S24E - 10 aompkzy------------------- RPS31 [J] COG1998 Ribosomal protein S27AE - 11 aompkzy------------------- RPS27A [J] COG2051 Ribosomal protein S27E - 11 aompkzy------------------- RPS28A [J] COG2053 Ribosomal protein S28E/S33 - 43 aompkzyqvdrlbcefghsnujxitw RpsC [J] COG0092 Ribosomal protein S3 - 11 aompkzy------------------- RPS1A [J] COG1890 Ribosomal protein S3AE - 46 aompkzyqvdrlbcefghsnujxitw RpsD [J] COG0522 Ribosomal protein S4 and related proteins - 11 aompkzy------------------- RPS4A [J] COG1471 Ribosomal protein S4E - 44 aompkzyqvdrlbcefghsnujxitw RpsE [J] COG0098 Ribosomal protein S5 - 34 ------yqvdrlbcefghsnujxitw RpsF [J] COG0360 Ribosomal protein S6 - 11 aompkzy------------------- RPS6A [J] COG2125 Ribosomal protein S6E (S10) - 45 aompkzyqvdrlbcefghsnujxitw RpsG [J] COG0049 Ribosomal protein S7 - 45 aompkzyqvdrlbcefghsnujxitw RpsH [J] COG0096 Ribosomal protein S8 - 12 aompkzy------------------- RPS8A [J] COG2007 Ribosomal protein S8E - 45 aompkzyqvdrlbcefghsnujxitw RpsI [J] COG0103 Ribosomal protein S9 - 4 --------------efg--------- Rmf [J] COG3130 Ribosome modulation factor - 34 ------yqvdrlbcefghsnujxitw Frr [J] COG0233 Ribosome recycling factor - 19 --------v--lb-efgh-nuj---- - [J] COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) - 25 -------qvdrlbcefghs--jxit- - [J] COG1544 Ribosome-associated protein Y (PSrp-1) - 33 -------qvdrlbcefghsnujxitw RbfA [J] COG0858 Ribosome-binding factor A - 28 -------qvdrlbcefghsnujx-t- RimM [J] COG0806 RimM protein, required for 16S rRNA processing - 26 -------qvd-lbcefghsnujx-t- QueA [J] COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) - 42 ----k-yqv-rlbcefghsnuj-i-- TrmA [J] COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase - 7 -------q------ef-h--u----- SelB [J] COG3276 Selenocysteine-specific translation elongation factor - 44 aompkzyqvdrlbcefghsnujxitw SerS [J] COG0172 Seryl-tRNA synthetase - 16 --------------efghsn-jx--- SmpA [J] COG2913 Small protein A (tmRNA-binding) - 48 aompkzyqvdrlbcefghsnujxitw ThrS [J] COG0441 Threonyl-tRNA synthetase - 74 aompkzyqvdrlbcefghsnujxitw FusA [J] COG0480 Translation elongation and release factors (GTPases) - 10 aompkzy------------------- EFB1 [J] COG2092 Translation elongation factor EF-1beta - 51 aompkzyqvdrlbcefghsnujxitw Efp [J] COG0231 Translation elongation factor P/translation initiation factor eIF-5A - 33 -------qvdrlbcefghsnujxitw Tsf [J] COG0264 Translation elongation factor Ts - 19 aompkzy------cefgh-------- SUI1 [J] COG0023 Translation initiation factor (SUI1) - 47 aompkzyqvdrlbcefghsnujxitw InfB [J] COG0532 Translation initiation factor 2 (GTPase) - 45 aompkzyqvdrlbcefghsnujxitw InfA [J] COG0361 Translation initiation factor IF-1 - 33 -------qvdrlbcefghsnujxitw InfC [J] COG0290 Translation initiation factor IF3 - 11 aompkzy------------------- GCD7 [J] COG1601 Translation initiation factor eIF-2, beta subunit/eIF-5 N-terminal domain - 16 a-mpkzyqv---bc-f--s--j---- GCN3 [J] COG0182 Translation initiation factor eIF-2B alpha subunit - 15 aompkzy-v----------------- GCD2 [J] COG1184 Translation initiation factor eIF-2B delta subunit - 10 aompkzy------------------- SUI2 [J] COG1093 Translation initiation factor eIF2alpha - 11 -------q------e-ghs--j--t- - [J] COG2269 Truncated, possibly inactive Class II lysyl-tRNA synthetase - 47 aompkzyqvdrlbcefghsnujxitw TrpS [J] COG0180 Tryptophanyl-tRNA synthetase - 48 aompkzyqvdrlbcefghsnujxitw TyrS [J] COG0162 Tyrosyl-tRNA synthetase - 5 -----------lb------------w - [J] COG3557 Uncharacterized domain/protein associated with RNAses G and E - 43 aompkzyqvdrlbcefghsnujxitw ValS [J] COG0525 Valyl-tRNA synthetase - 22 aomp-z---d---cefghsn-j---- LasT [J] COG0565 rRNA methylase - 65 a-----yqvdrlbcefghsnujxitw SpoU [J] COG0566 rRNA methylases - 51 aom-kzy-vdrlbcefghsnuj-i-- Sun [J] COG0144 tRNA and rRNA cytosine-C5-methylases - 31 ------yqvdrlbcefghsnujxit- MiaA [J] COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase - 9 aompkz-------------------- CCA1 [J] COG1746 tRNA nucleotidyltransferase (CCA-adding enzyme) - 48 ------yqvdrlbcefghsnujxit- PcnB [J] COG0617 tRNA nucleotidyltransferase/poly(A) polymerase - 12 aompkzy------------------- SEN2 [J] COG1676 tRNA splicing endonuclease - 33 -------qvdrlbcefghsnujxitw TrmD [J] COG0336 tRNA-(guanine-N1)-methyltransferase - 8 ----------r---efg--------- MalT [K] COG2909 ATP-dependent transcriptional regulator - 246 --------v-rlbcefghsnuj---- AraC [K] COG2207 AraC-type DNA-binding domain-containing proteins - 10 a-mpkz-------------------- Ssh10b [K] COG1581 Archaeal DNA-binding protein - 4 ------------b-e----n------ - [K] COG2732 Barstar, RNAse (barnase) inhibitor - 14 ao--k----d-lb-efghs------- BirA [KH] COG1654 Biotin operon repressor - 67 -o-----qvdrlb-efghsn-jx--- CspC [K] COG1278 Cold shock proteins - 58 ---------drlbcefg----j---- CsgD [K] COG2771 DNA-binding HTH domains - 14 ----------r-b-e-g----j---- CadC [K] COG3710 DNA-binding winged-HTH domains - 44 aompkzyqvdrlbcefghsnujxitw RpoA [K] COG0202 DNA-directed RNA polymerase alpha subunit/40 kD subunit - 49 aompkzyqvdrlbcefghsnujxitw RpoB [K] COG0085 DNA-directed RNA polymerase beta subunit/140 kD subunit (split gene in Mjan, Mthe, Aful) - 60 aompkzyqvdrlbcefghsnujxitw RpoC [K] COG0086 DNA-directed RNA polymerase beta' subunit/160 kD subunit (split gene in archaea and Syn) - 7 -----------lb------------w RpoE [K] COG3343 DNA-directed RNA polymerase delta subunit - 66 -------qvdrlbcefghsnujxitw RpoD [K] COG0568 DNA-directed RNA polymerase sigma subunits (sigma70/sigma32) - 23 -------qv-r-bcefg---u--it- FliA [K] COG1191 DNA-directed RNA polymerase specialized sigma subunit - 109 --------vdrlbcefghsn-j--t- RpoE [K] COG1595 DNA-directed RNA polymerase specialized sigma subunits, sigma24 homologs - 20 -------q----b-efg-snuj-it- RpoN [K] COG1508 DNA-directed RNA polymerase specialized sigma subunits, sigma54 homologs - 11 aompkzy------------------- RPB7 [K] COG1095 DNA-directed RNA polymerase subunit E' - 9 aompkz-------------------- - [K] COG2093 DNA-directed RNA polymerase subunit E'' - 37 aompkzyqvdrlbcefghsnujx-t- RpoZ [K] COG1758 DNA-directed RNA polymerase subunit K/omega - 15 aompkzy------------------- RPB9 [K] COG1594 DNA-directed RNA polymerase subunit M/Transcription elongation factor TFIIS - 10 aompkzy------------------- RPC10 [K] COG1996 DNA-directed RNA polymerase subunit RPC10 (contains C4-type Zn-finger) - 10 aompkzy------------------- RPB5 [K] COG2012 DNA-directed RNA polymerase, subunit H, RpoH/RPB5 - 11 aompkzy------------------- RPB11 [K] COG1761 DNA-directed RNA polymerase, subunit L - 10 aompkzy------------------- RPB10 [K] COG1644 DNA-directed RNA polymerase, subunit N (RpoN/RPB10) - 10 aompk-y-v----------------- ELP3 [K] COG1243 ELP3 component of the RNA polymerase II complex, consists of an N-terminal BioB/LipA-like domain and a C-terminal histone acetyltransferase domain (only BioB/LipA-like domain in Thermotoga) - 45 -o----yqvd-lbcefghsnuj-itw VacB [K] COG0557 Exoribonucleases - 10 --------------efghsn------ Fis [KL] COG2901 Factor for inversion stimulation Fis, transcriptional activator - 7 --------v---b-e----------- GlpP [K] COG1954 Glycerol-3-phosphate responsive antiterminator (mRNA-binding) - 309 aompkzyqvdrlbcefghsnuj-i-w WecD [KR] COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - 35 aompkz--vdrlb-e---s--j-it- TroR [K] COG1321 Mn-dependent transcriptional regulator - 8 -------qv---b-efg--------- FlgM [KN] COG2747 Negative regulator of flagellin synthesis (anti-sigma-28 factor) - 5 -----------l--e--h-n------ - [K] COG3561 Phage anti-repressor protein - 3 ----------r-b-e----------- PaaX [K] COG3327 Phenylacetic acid-responsive transcriptional repressor - 21 aompkzy-vd-lbc------u---t- - [K] COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP - 13 ---------drlb-------uj---w - [K] COG2740 Predicted nucleic-acid-binding protein implicated in transcription termination - 11 aompkzy------------------- - [K] COG1813 Predicted transcription factor, homolog of eukaryotic MBF1 - 42 -------qvdrlbcefghsnujx--- - [K] COG1959 Predicted transcriptional regulator - 12 ---p-----dr-bc--g--------- - [K] COG2345 Predicted transcriptional regulator - 20 ---------dr-b-efg-snuj---- - [K] COG2378 Predicted transcriptional regulator - 6 a-m-kz-------------------- - [K] COG2462 Predicted transcriptional regulator - 24 -----------l--ef-hsn-j---- - [K] COG2932 Predicted transcriptional regulator - 9 --------------e-g-sn------ - [K] COG2944 Predicted transcriptional regulator - 11 --------------e-g-s------- AlpA [K] COG3311 Predicted transcriptional regulator - 9 aom----------------------- - [K] COG3355 Predicted transcriptional regulator - 5 --------------e--h-n------ Nlp [K] COG3423 Predicted transcriptional regulator - 11 a-mp-z-------------------- - [K] COG3432 Predicted transcriptional regulator - 6 -----------------hs--j---- - [K] COG3636 Predicted transcriptional regulator - 7 ------------b--f-----j---- - [K] COG3655 Predicted transcriptional regulator - 10 ----k-----rl-c-------j---- - [K] COG3682 Predicted transcriptional regulator - 5 ----k----d----------u----w - [K] COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen - 3 ao--k--------------------- - [K] COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon - 29 a--pk---vdrlbc-f--sn-j--tw - [K] COG1386 Predicted transcriptional regulator containing the HTH domain - 5 aom--z-------------------- - [K] COG2524 Predicted transcriptional regulator with C-terminal CBS domains - 6 ao-pk--------------------- - [K] COG3620 Predicted transcriptional regulator with C-terminal CBS domains - 22 --------vdrlbcefghsn-j-i-- - [K] COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains - 152 aompkz-qvdrlbcefghsnuj---- ArsR [K] COG0640 Predicted transcriptional regulators - 89 a------q-drlbcefghsnuj---- SoxR [K] COG0789 Predicted transcriptional regulators - 8 a-m-kz-qv----------------- - [K] COG1318 Predicted transcriptional regulators - 23 aompkz---d--b------------- - [K] COG1378 Predicted transcriptional regulators - 9 aompkz-------------------- - [K] COG1395 Predicted transcriptional regulators - 168 --m----qvdrlb-efghsn-jx-t- HipB [K] COG1396 Predicted transcriptional regulators - 58 aom-kz-q-drlb-efg-snujxit- Spo0J [K] COG1475 Predicted transcriptional regulators - 19 aom-k----d-lb--f-----j---- - [K] COG1476 Predicted transcriptional regulators - 6 aomp---------------------- - [K] COG1497 Predicted transcriptional regulators - 7 --m-k-------b------------- - [K] COG1510 Predicted transcriptional regulators - 65 aompkz--vdrlb-e-g----j---- - [K] COG1695 Predicted transcriptional regulators - 9 aompkz---------f---------- - [K] COG1709 Predicted transcriptional regulators - 12 ---p----v-rlbc------------ - [K] COG1725 Predicted transcriptional regulators - 62 aomp-z---drlbcefghs-uj---- - [K] COG1733 Predicted transcriptional regulators - 9 aompk--------------------- - [K] COG1777 Predicted transcriptional regulators - 22 aompkz----r-b-e---s--j---- - [K] COG3609 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain - 19 aom-kz---d--b-e-----uj---- NikR [K] COG0864 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain - 14 -----------l--ef-hs------- - [K] COG3617 Prophage antirepressor - 11 ----k---v--lb-e-g--------- PspC [KT] COG1983 Putative stress-responsive transcriptional regulator - 19 ---pkzy----lb----h--u----- TenA [K] COG0819 Putative transcription activator - 17 ---------dr---efghsn-jxi-- - [K] COG1678 Putative transcriptional regulator - 18 -------qvdr-bc-f--snuj--t- - [K] COG1521 Putative transcriptional regulators, homologs of Bvg accessory factor - 12 aom-kzyq------ef---------- RCL1 [K] COG0430 RNA phosphate cyclase - 48 ------y------c--g---u---t- - [K] COG0724 RNA-binding proteins (RRM domain) - 4 --------------efg--------- Rsd [K] COG3160 Regulator of sigma D - 22 ao--kz----r-b--------j---- AbrB [K] COG2002 Regulators of stationary/sporulation gene expression - 10 --------v----c-fg-s------- - [KT] COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain - 20 -----------lb-efg-s--j---- LytT [KT] COG3279 Response regulator of the LytR/AlgR family - 24 --------vdrlbcefghs--j---- LexA [KT] COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) - 28 aompkzy------------------- LSM1 [K] COG1958 Small nuclear ribonucleoprotein (snRNP) homolog - 7 ------------b-efgh-------- - [KT] COG3835 Sugar diacid utilization regulator - 56 ao-pkzy-vdrlbcefghs----i-w HepA [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family - 47 aompkzyqvdrlbcefghsnujxitw NusG [K] COG0250 Transcription antiterminator - 47 aompkz-qvdrlbcefghsnujxitw NusA [K] COG0195 Transcription elongation factor - 50 --------vdrlb-efghsnujxitw GreA [K] COG0782 Transcription elongation factor - 10 aompkzy------------------- EGD2 [K] COG1308 Transcription factor homologous to NACalpha-BTF3 - 26 aompkzy------------------- SUA7 [K] COG1405 Transcription initiation factor IIB - 8 aom-kzy------------------- TFA1 [K] COG1675 Transcription initiation factor IIE, large subunit - 20 aompkzy------------------- SPT15 [K] COG2101 Transcription initiation factor TFIID (TATA-binding protein) - 33 -------qvdrlbcefghsnujxitw NusB [K] COG0781 Transcription termination factor - 27 -------qvdr-b-efghsnujxit- Rho [K] COG1158 Transcription termination factor - 24 -----------lb-e----------- BglG [K] COG3711 Transcriptional antiterminator - 443 a-m----q-drlbcefghsnuj---- LysR [K] COG0583 Transcriptional regulator - 309 aom-k--qvdrlbcefghsnuj---w AcrR [K] COG1309 Transcriptional regulator - 26 --------vdrlbc----------t- LytR [K] COG1316 Transcriptional regulator - 47 -o-----qvdr-b-efgh--uj---- IclR [K] COG1414 Transcriptional regulator - 9 ------y--d--b--f--s--j---- PaiB [K] COG2808 Transcriptional regulator - 6 --------------e-gh-------- MtlR [K] COG3722 Transcriptional regulator - 14 -------q------efg----j--t- FhlA [KT] COG3604 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains - 12 -------q----b-ef---------- RocR [KT] COG3829 Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains - 9 aompkz-------------------- - [K] COG1339 Transcriptional regulator of a riboflavin/FAD biosynthetic operon - 7 --------------efgh-------- TyrR [K] COG3283 Transcriptional regulator of aromatic amino acids metabolism - 19 --------v-rlbc----s-uj-i-w HrcA [K] COG1420 Transcriptional regulator of heat shock gene - 19 ---------d-lb-e-gh---j---- DeoR [K] COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain - 153 aompkz---dr-b-efgh-n-j---- Lrp [K] COG1522 Transcriptional regulators - 134 --------vdrlb-efghs--j---- PurR [K] COG1609 Transcriptional regulators - 44 --------v--lb-efgh-n-j---- RpiR [K] COG1737 Transcriptional regulators - 61 ---p----vdrlb-efg--n-j---- GntR [K] COG1802 Transcriptional regulators - 149 aompkz--vdrlb-efg-sn-j---- MarR [K] COG1846 Transcriptional regulators - 74 ao-p-z-qvdrlbce-gh---j--t- NagC [K] COG1940 Transcriptional regulators - 54 ---------dr-b-efgh-n-j---- FadR [K] COG2186 Transcriptional regulators - 55 ---------drlb-efg----j---w PhnF [K] COG2188 Transcriptional regulators - 57 ---pkzy-vdrlb-efgh---j---- ARO8 [KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs - 72 -------qvd-lb-efgh-n-j---- GlpR [KG] COG1349 Transcriptional regulators of sugar metabolism - 12 -------q-dr-b--------jx-t- - [K] COG1329 Transcriptional regulators, similar to M. xanthus CarD - 7 --------------e-ghs----i-- TrpR [K] COG2973 Trp operon repressor - 36 ------yqvdrlbcefghsnujxitw Rnc [K] COG0571 dsRNA-specific ribonuclease - 23 aom-kzy--dr-bcefg-s--j---- AlkA [L] COG0122 3-Methyladenine DNA glycosylase - 17 ----------rlb-efgh-n-j---- Tag [L] COG2818 3-Methyladenine DNA glycosylase - 10 -----z---dr-b--f-----jxit- Mpg [L] COG2094 3-methyladenine DNA glycosylase - 56 aompkzyqvdrlbcefghsnujxitw Exo [L] COG0258 5'-3' exonuclease (including N-terminal domain of PolI) - 28 -om--z---drlb-efghsnuj-it- MutY [L] COG1194 A/G-specific DNA glycosylase - 38 aompkzyq--r-b--fgh-nuj---- CDC9 [L] COG1793 ATP-dependent DNA ligase - 7 a-m-kz-q------------------ - [L] COG1423 ATP-dependent DNA ligase, homolog of eukaryotic ligase III - 25 ----------rlb-efghsnujxit- RecB [L] COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) - 28 --m---y--drlb-efghsnuj-it- RecD [L] COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member - 21 aompkz-qvd-lbcefg-------t- SbcC [L] COG0419 ATPase involved in DNA repair - 65 aompkzyqvdrlbcefghsnu-xitw HolB [L] COG0470 ATPase involved in DNA replication - 47 -------qvdrlbcefghsnujxitw DnaA [L] COG0593 ATPase involved in DNA replication initiation - 25 -------q-drlbcefghsnujx-t- RecN [L] COG0497 ATPases involved in DNA repair - 19 a--p-------------hsnuj---w - [L] COG2189 Adenine specific DNA methylase Mod - 21 --m-k-----rlb----h--uj---w - [L] COG0827 Adenine-specific DNA methylase - 4 ------------b-------u----- - [L] COG3392 Adenine-specific DNA methylase - 9 ----------r---efg-s--j---- AlkB [L] COG3145 Alkylated DNA repair protein - 7 aom-k--------------------- - [L] COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain - 72 ---p---qvdrlbcefghsnujxitw HimA [L] COG0776 Bacterial nucleoid DNA-binding protein - 31 aompkzy------------------- CDC6 [LO] COG1474 Cdc6-related protein, AAA superfamily ATPase - 4 --------------e----n-j---- Vsr [L] COG3727 DNA G:T-mismatch repair endonuclease - 62 ao-p--yqvdrlbcefghsnujxitw GyrA [L] COG0188 DNA gyrase (topoisomerase II) A subunit - 61 ao-p--yqvdrlbcefghsnujxitw GyrB [L] COG0187 DNA gyrase (topoisomerase II) B subunit - 9 ------------b-e------j---- - [L] COG3449 DNA gyrase inhibitor - 6 a---kzy------------------- TIP49 [L] COG1224 DNA helicase TIP49, TBP-interacting protein - 31 -o----yqvd-lbcefghsn-jxit- MutL [L] COG0323 DNA mismatch repair enzyme (predicted ATPase) - 5 --------------e-gh-------- MutH [L] COG3066 DNA mismatch repair protein - 41 -ompk---vd-lb-e-ghsnuj---- - [L] COG0863 DNA modification methylase - 29 ao-pkzy--drl--e-g-------t- SSL2 [L] COG1061 DNA or RNA helicases of superfamily II - 30 ------yqvdrlbcefghsnujxit- PolA [L] COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains - 9 aompk-y------------------- HYS2 [L] COG1311 DNA polymerase II small subunit (predicted phosphatase) - 39 -------qvdrlbcefghsnujxitw DnaE [L] COG0587 DNA polymerase III alpha subunit - 8 --------v--lb------------w PolC [L] COG2176 DNA polymerase III alpha subunit, the Gram-positive type - 12 --------------efghsn-jx--- HolC [L] COG2927 DNA polymerase III chi subunit - 32 -------qvdrlbcefghsnujxitw HolA [L] COG1466 DNA polymerase III delta subunit - 58 a--p--yqvdrlbcefghsnujxit- DnaQ [L] COG0847 DNA polymerase III epsilon subunit and related 3'-5' exonucleases - 37 -------qvdrlbcefghsnujxitw DnaX [L] COG2812 DNA polymerase III, gamma/tau subunits - 4 --------------e-gh-------- HolD [L] COG3050 DNA polymerase III, psi subunit - 8 --mp--yq-d--b------------- POL4 [L] COG1796 DNA polymerase IV (family X) - 28 aompkzy-------efg--------- PolB [L] COG0417 DNA polymerase elongation subunit (family B) - 46 aompkzyqvdrlbcefghsnujxitw DnaN [L] COG0592 DNA polymerase sliding clamp subunit (PCNA homolog) - 46 aompkz-qvdrlbcefghsnujxitw DnaG [L] COG0358 DNA primase (bacterial type) - 9 --------------efghsn------ RdgC [L] COG2974 DNA recombination-dependent growth factor C - 26 aompkzyqvdrlbcefg-------t- SbcD [L] COG0420 DNA repair exonuclease - 20 a-mpkz--v-r-bc-f-----j---- SplB [L] COG1533 DNA repair photolyase - 25 -------qv--lbcefghsn-j---- RadC [L] COG2003 DNA repair proteins - 30 -------q--rlb-e------j---w DnaC [L] COG1484 DNA replication protein - 8 aom-kzy------------------- - [L] COG1697 DNA topoisomerase VI, subunit A - 7 aom-kz-------------------- - [L] COG1389 DNA topoisomerase VI, subunit B - 24 --------vdrlbcefghsnu----- ComEA [L] COG1555 DNA uptake protein and related DNA-binding proteins - 7 -----------l--e-ghs------- RelB [L] COG3077 DNA-damage-inducible protein J - 14 ao-pkz-qvd--b-e---s------- Nfi [L] COG1515 Deoxyinosine 3'endonuclease (endonuclease V) - 17 -om---y----l-cefg--n-j---- PhrB [L] COG0415 Deoxyribodipyrimidine photolyase - 9 aompk-y------------------- MPH1 [L] COG1111 ERCC4-like helicases - 10 aom-kzy------------------- MUS81 [L] COG1948 ERCC4-type nucleases - 7 ---------d--b-efg--------- EndA [L] COG2356 Endonuclease I - 9 --mp---qv-----------u----- - [L] COG2231 Endonuclease III related proteins - 26 -ompkzyqv-r-b-e-g------i-w Nfo [L] COG0648 Endonuclease IV - 10 aompkzy------------------- PRI2 [L] COG2219 Eukaryotic-type DNA primase, large subunit - 11 aompkzy------------------- PRI1 [L] COG1467 Eukaryotic-type DNA primase, small subunit - 36 -om----qvdrlbcefghsnujxitw UvrA [L] COG0178 Excinuclease ATPase subunit - 8 --------------efghs------- SbcB [L] COG2925 Exonuclease I - 37 a-mp--y--drlbcefghsnujx-t- XthA [L] COG0708 Exonuclease III - 14 ----------r---efghsn---it- RecC [L] COG1330 Exonuclease V gamma subunit - 23 --------vdrlb-efghsnujx--- XseB [L] COG1722 Exonuclease VII small subunit - 26 --------vdrlb-efghsnujxi-- XseA [L] COG1570 Exonuclease VII, large subunit - 28 ---------drlbcefghsn-j---w Nei [L] COG0266 Formamidopyrimidine-DNA glycosylase - 8 ---------d----e--h-nuj---- Mug [L] COG3663 G:T/U mismatch-specific DNA glycosylase - 11 --m-k--q-d--bce-----u----- McrB [L] COG1401 GTPase subunit of restriction endonuclease - 35 -om----qvdrlbcefghsnujxitw UvrB [L] COG0556 Helicase subunit of the DNA excision repair complex - 21 aom-k-y------------------- HHT1 [L] COG2036 Histones H3 and H4 - 7 aom-kz-------------------- - [L] COG1591 Holliday junction resolvase - archaeal type - 31 --------vdrlbcefghsnujxitw RuvA [L] COG0632 Holliday junction resolvasome DNA-binding subunit - 23 --------vdr--cefghsnujxit- RuvC [L] COG0817 Holliday junction resolvasome endonuclease subunit - 32 --------vdrlbcefghsnujxitw RuvB [L] COG2255 Holliday junction resolvasome helicase subunit - 28 ------y--d----efghsn-j--t- HrpA [L] COG1643 HrpA-like helicases - 45 -o-p----------e-g--n------ - [L] COG3039 IS5 transposase - 17 -------q-----ce--h-------- InsB [L] COG1662 Insertion element IS1 protein InsB, putative transposase - 219 aompkz-qvdrlbcefghsnujxitw XerC [L] COG0582 Integrase - 64 --mpkzyq-dr-bc------------ - [L] COG1372 Inteins - 5 --m-kz-------------------- - [L] COG3780 Intron_maturase, DNA endonuclease (intein-related) - 46 aompkzyqv-rlb-efghsnuj-it- Ada [L] COG0350 Methylated DNA-protein cysteine methyltransferase - 56 --m-kzyqvdrlbcefghsnujxitw TatD [L] COG0084 Mg-dependent DNase - 22 -om-k-yq----b--f-h-nuj---w - [L] COG1525 Micrococcal nuclease (thermonuclease) homologs - 17 -om-k--qvd-lbc------u---t- - [L] COG1193 MutS-like ATPases involved in mismatch repair, family 1 - 35 -o-p--yqvd-lbcefghsn-jxit- MutS [L] COG0249 MutS-like ATPases involved in mismatch repair, family 2 - 29 --------vdrlbcefghsnujxit- - [L] COG0742 N6-adenine-specific methylase - 10 aompk--------------------- - [L] COG1933 NA polymerase II large subunit - 35 -------qvdrlbcefghsnujxitw Lig [L] COG0272 NAD-dependent DNA ligase (contains BRCT domain type II) - 11 ------y--dr---efgh---j---- NPY1 [L] COG2816 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding - 198 aomp-zyqvdrlbcefghsnujxit- MutT [LR] COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes - 5 --------------e-gh-------- SeqA [L] COG3057 Negative regulator of replication initiationR - 40 -om----qvdrlbcefghsnujxitw UvrC [L] COG0322 Nuclease subunit of the excinuclease complex - 35 -o----y---rlbcefgh-n-j---w DinP [L] COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair - 8 -----------lb-e------j---- XtmA [L] COG3728 Phage terminase, small subunit - 6 -------------------nu----- - [L] COG3298 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB - 11 --m----------cefgh--uj---- - [L] COG3593 Predicted ATP-dependent endonuclease of the OLD family - 23 aompkzy------------------- MCM2 [L] COG1241 Predicted ATPase involved in replication control, Cdc46/Mcm family - 5 a---kz--v----------------- - [L] COG1743 Predicted DNA methylase containing a Zn-ribbon module - 12 aompkzy------------------- - [L] COG1041 Predicted DNA modification methylase - 5 ------y--d-----f-----j---- - [L] COG3569 Predicted DNA topoisomerase IB - 46 aompkzyqvdrlbcefghsnujxit- Nth [L] COG0177 Predicted EndoIII-related endonuclease - 5 a-m-kz-------------------- - [L] COG2254 Predicted HD superfamily hydrolase, possibly a nuclease - 21 a-m-kz---d-lbcefghsn------ - [L] COG0116 Predicted N6-adenine-specific DNA methylases - 25 -------qvdrlbcefghsnuj--t- Smf [LN] COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake - 20 -o---------lb-efg--n-j---- - [L] COG2827 Predicted endonuclease containing a URI domain - 21 -------qvdr--cefghsnuj--t- - [L] COG0792 Predicted endonuclease distantly related to archaeal Holliday junction resolvase - 6 --------vd--bc------u----- - [L] COG1787 Predicted endonuclease distantly related to archaeal Holliday junction resolvase and Mrr-like restriction enzymes - 31 -------qvdrlbcefghsnujxi-w - [L] COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) - 9 ----------r-b--f-----j---- - [L] COG3285 Predicted eukaryotic-type DNA primase - 4 -om---------b------------- - [L] COG3359 Predicted exonuclease - 7 ---------drl--efg--------- - [L] COG3695 Predicted methylated DNA-protein cysteine methyltransferase - 9 -om-kz----r--------------- - [L] COG1637 Predicted nuclease of the RecB family - 4 ---------d-----fg----j---- - [L] COG3183 Predicted restriction endonuclease - 5 ---p-----d----e----n------ - [L] COG3440 Predicted restriction endonuclease - 11 --mpk-----r--------------- - [L] COG2452 Predicted site-specific integrase-resolvase - 23 a--p-----dr---efgh-n-j---- - [L] COG1425 Predicted transposase - 56 -o-p----vd--b-efgh-nuj---- - [L] COG1943 Predicted transposase - 64 ---------dr--c-------j---- - [L] COG3293 Predicted transposase - 33 ---p------rlb-e------j---w - [L] COG3328 Predicted transposase - 60 a--p-----d--bce----n-j---- - [L] COG3335 Predicted transposase - 61 -o-p-----d--bce----------- - [L] COG3385 Predicted transposase - 88 -ompk--qvdr--ce---s-u---t- - [L] COG0675 Predicted transposases - 5 ----kz---d--------------t- - [L] COG2810 Predicted type IV restriction endonuclease - 30 -------qvdrlbcefghsnujxit- PriA [L] COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase - 7 --------------e-gh-n------ PriB [L] COG2965 Primosomal replication protein N - 10 ------------b---g-sn------ - [L] COG2946 Putative phage replication protein RstA - 135 ---p-----drlbcefgh-n-j---w Tra5 [L] COG2801 Putative transposase - 15 aom----q----------s--j---- - [L] COG3316 Putative transposase - 12 ao-p-----d--b------------- - [L] COG3415 Putative transposase - 34 -ompkzyq--rlb-efghsn-j---- DinG [L] COG1199 Rad3-related DNA helicases - 4 -------q---l------s--j---- RepA [L] COG3598 RecA-family ATPase - 57 aompkzyqvdrlbcefghsnujxitw RecA [L] COG0468 RecA/RadA recombinase - 14 a-m-kz-qv--lb------------- - [L] COG1468 RecB family exonuclease - 12 --m--z----r---------ujx-t- - [L] COG2887 RecB family exonuclease - 27 -------qvdrlbcefghsnujx-t- RecG [LK] COG1200 RecG-like helicases - 20 ---------drlbcefghs--jxit- RecF [L] COG1195 Recombinational DNA repair ATPase (RecF pathway) - 6 -----------lb-e----------- RecT [L] COG3723 Recombinational DNA repair protein (RecE pathway) - 28 -------q-drlbcefghsnujxitw RecR [L] COG0353 Recombinational DNA repair protein (RecF pathway) - 24 ---------drlbcefghsn-jxitw RecO [L] COG1381 Recombinational DNA repair protein (RecF pathway) - 18 aompkzy------------------- - [L] COG1599 Replication factor A large subunit and related ssDNA-binding proteins - 7 -----------lb------------w DnaB [L] COG3611 Replication initiation/membrane attachment protein - 38 -------qvdrlbcefghsnujxitw DnaB [L] COG0305 Replicative DNA helicase - 20 ---------drlbce---s--j---- McrA [L] COG1403 Restriction endonuclease - 6 -om------dr---e----------- Mrr [L] COG1715 Restriction endonuclease - 6 -----------------h-nu----- - [L] COG3587 Restriction endonuclease - 50 aompk-----rl--efghs-uj---w HsdS [L] COG0732 Restriction endonuclease S subunits - 32 aom-k------l--efghsnuj---w HsdR [L] COG0610 Restriction enzymes type I helicase subunits and related helicases - 11 ----------r-bcefg--------- - [L] COG3344 Retron-type reverse transcriptase - 11 a-m-kz-qv----------------- - [L] COG1110 Reverse gyrase - 26 -o----y--dr-bcefghsnujx-t- RnhA [L] COG0328 Ribonuclease HI - 38 aompkzyqvdrlbcefghsnujxit- RnhB [L] COG0164 Ribonuclease HII - 9 -------q---lb----------i-w - [L] COG1039 Ribonuclease HII Family 2 - 49 ------yqvdrlbcefghsnujxitw Ssb [L] COG0629 Single-stranded DNA-binding protein - 48 aompk--qvd-lbcefghsnujxit- RecJ [L] COG0608 Single-stranded DNA-specific exonuclease - 37 --m-kz-----lbce-ghsnuj---w Dcm [L] COG0270 Site-specific DNA methylase - 18 --mpk-------bce-ghsnu---t- Dam [L] COG0338 Site-specific DNA methylase - 34 ---pk----drlb-efg-s--j---- PinR [L] COG1961 Site-specific recombinases, DNA invertase Pin homologs - 17 a-mpk--q---lb-----------tw - [L] COG1658 Small primase-like proteins (Toprim domain) - 23 -o-------d-lbcefghs-ujx-t- Dps [L] COG0783 Starvation-inducible DNA-binding protein - 76 -omp--yqvdrlbcefghsnujxitw UvrD [L] COG0210 Superfamily I DNA and RNA helicases - 37 aompk-yqv-r--cef--s-u----w - [L] COG1112 Superfamily I DNA and RNA helicases and helicase subunits - 136 a-mp--yq-drlbcefghsnujx-tw SrmB [LKJ] COG0513 Superfamily II DNA and RNA helicases - 22 -----zy--d-lbcefghsn-j--t- RecQ [L] COG0514 Superfamily II DNA helicase - 6 a-mp---qv----------------- - [L] COG1059 Thermostable 8-oxoguanine DNA glycosylase - 58 aompkzyqvdrlbcefghsnujxitw TopA [L] COG0550 Topoisomerase IA - 29 --------vdrlbcefghsnujxit- Mfd [LK] COG1197 Transcription-repair coupling factor - superfamily II helicase - 5 a-m-kz-------------------- - [L] COG2178 Translin (RNA-binding protein, recombination hotspot binding in eukaryotes) - 118 ---p-----drlb-efgh---j---- - [L] COG2963 Transposase - 47 -o-p-----d-l--e------j---- - [L] COG3436 Transposase - 52 ---p------r-b--------j---- - [L] COG3464 Transposase - 73 ----------rlb--f---n-j---- - [L] COG3547 Transposase - 25 -----------lb--f-----j---- - [L] COG3666 Transposase - 30 -o---------------h-n------ - [L] COG3676 Transposase - 15 -o--k--------ce----------- - [L] COG3677 Transposase - 47 ----------rlb-e----n-j---- Tra8 [L] COG2826 Transposase, IS30 family - 40 aom-k-----rl--efghsnuj---w HsdM [L] COG0286 Type I restriction-modification system methyltransferase subunit - 29 -omp-----d--b-e----nuj--t- - [L] COG1002 Type II restriction enzyme, methylase subunits - 24 ------y-vdrlb-efghsnuj---w - [L] COG2256 Uncharacterized ATPase related to the helicase subunit of the Holliday junction resolvase - 27 ------y--drlb-efghsnu--itw Ung [L] COG0692 Uracil DNA glycosylase - 34 ao-pkz-qvdrl-c--gh-nujx-t- - [L] COG1573 Uracil-DNA glycosylase - 40 aompk---v--lb-efghsnu--itw TopA [L] COG0551 Zn-finger domain associated with topoisomerase type I - 36 aom-k--qv-r-b--fg---u---t- - [D] COG0455 ATPases involved in chromosome partitioning - 52 aompkzyqvdr-bcefghsnujx--- Mrp [D] COG0489 ATPases involved in chromosome partitioning - 92 -ompk--q-dr-bcefg-snujxitw Soj [D] COG1192 ATPases involved in chromosome partitioning - 58 -------qvdrlbcefghsnujxit- FtsW [D] COG0772 Bacterial cell division membrane protein - 8 a-m----------------------- CooC [D] COG3640 CO dehydrogenase maturation factor - 57 aompk--qvdrlbcefghsnujx-tw FtsZ [D] COG0206 Cell division GTPase - 11 ---------drlb------------- DivIVA [D] COG3599 Cell division initiation protein - 18 ---------drlb-efghsn-j---- FtsX [D] COG2177 Cell division protein - 10 ------------b-efghsn------ FtsN [D] COG3087 Cell division protein - 7 --------------efghs------- ZipA [D] COG3115 Cell division protein - 8 --------------efghs------- FtsL [D] COG3116 Cell division protein - 35 aompk-yqvdrlbc-f--sn-j--tw Smc [D] COG1196 Chromosome segregation ATPases - 49 ---------drlb-efghsnujxitw FtsK [D] COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins - 37 a-mp--yqv---b-efghs-ujxit- MreB [D] COG1077 HSP70 class molecular chaperones involved in cell morphogenesis - 31 -om-k-yqvdr-bcefghsnuj---- CrcB [D] COG0239 Integral membrane protein possibly involved in chromosome condensation - 12 --------------efgh-n-jx--- - [D] COG2917 Intracellular septation protein A - 10 -------qvd-lbc-------j---- Gid [D] COG1206 NAD(FAD)-utilizing enzyme apparently involved in cell division - 33 ------yqvd-lbcefghsnujxitw GidA [D] COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division - 35 ----k-yqvdr-bcefghsnujxi-- Maf [D] COG0424 Nucleotide-binding protein implicated in inhibition of septum formation - 18 ---------drlb-efghsn-j---- FtsE [D] COG2884 Predicted ATPase involved in cell division - 22 -ompkzyq--r-bc------------ ArsA [D] COG0003 Predicted ATPase involved in chromosome partitioning - 77 aompkzyqvdrlbcefghsnujxitw MesJ [D] COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control - 34 -------qvd-lbcefghsnujx-t- FtsA [D] COG0849 Predicted ATPases of the HSP70 class involved in cell division - 11 ----------r---ef-hsnuj---- Fic [D] COG2184 Protein involved in cell division - 5 --------------e--h-n------ - [D] COG2846 Regulator of cell morphogenesis and NO signaling - 18 -------qvd--bcefghsnuj---- MinC [D] COG0850 Septum formation inhibitor - 22 -------qvd--bcefg-snuj---- MinD [D] COG2894 Septum formation inhibitor-activating ATPase - 13 ---------d---cefg-snuj---- MinE [D] COG0851 Septum formation topological specificity factor - 8 ---------d--bc------------ SpoIID [D] COG2385 Sporulation protein and related proteins - 5 --------------e-gh-------- MukF [D] COG3006 Uncharacterized protein involved in chromosome partitioning - 5 --------------e-gh-------- MukE [D] COG3095 Uncharacterized protein involved in chromosome partitioning - 5 --------------e-gh-------- MukB [D] COG3096 Uncharacterized protein involved in chromosome partitioning - 36 a----z-q-dr-bcefghsnujx--- CcmC [O] COG0755 ABC-type transport system involved in cytochrome c biogenesis, permease component - 11 a--------d----efghs--j---- CcmB [O] COG2386 ABC-type transport system involved in cytochrome c biogenesis, permease component - 4 -------------c--g--n------ HlyC [O] COG2994 ACP:hemolysine acyltransferase (hemolysin-activating protein) - 7 a-m----q-d----e------j---- DraG [O] COG1397 ADP-ribosylglycohydrolase - 14 aom-kzy------------------- RPT1 [O] COG1222 ATP-dependent 26S proteasome regulatory subunit - 32 ------yqvd--b-efghsnujxitw Lon [O] COG0466 ATP-dependent Lon protease, bacterial type - 47 ------yqvdrlbcefghsnujxitw HflB [O] COG0465 ATP-dependent Zn proteases - 31 ------yqvdrlbcefghsnujxit- ClpX [O] COG1219 ATP-dependent protease Clp, ATPase subunit - 19 -------qv---b-efghs-ujx-t- HslU [O] COG1220 ATP-dependent protease, ATPase subunit - 57 aompkzy--dr-bc-f----uj---- SpoVK [O] COG0464 ATPases of the AAA+ class - 77 --m---yqvdrlbcefghsnujxitw ClpA [O] COG0542 ATPases with chaperone activity, ATP-binding subunit - 8 -----------lb-ef--s--j---- AhpF [O] COG3634 Alkyl hydroperoxide reductase, large subunit - 6 ---------------f--s--j---- - [O] COG3555 Aspartyl/asparaginyl beta-hydroxylase and related dioxygenases - 69 aompkzyqvdrlbcefghsnujxitw GroL [O] COG0459 Chaperonin GroEL (HSP60 family) - 38 ------yqvdrlbcefghsnujxitw GroS [O] COG0234 Co-chaperonin GroES (HSP10) - 35 --m----q-d-lb-efgh-nu----- - [O] COG0826 Collagenase and related proteases - 31 -om---y--drlbcefghsnuj--tw - [O] COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase - 17 a----z---d----efghs--jx--- CcmF [O] COG1138 Cytochrome c biogenesis factor - 22 a-m-kz-qvdrlbc---h--uj--t- CcdA [O] COG0785 Cytochrome c biogenesis protein - 11 ---------d----efghs--jx--- CcmE [O] COG2332 Cytochrome c-type biogenesis protein CcmE - 20 -------qvd-lbcefghsn-j---- - [O] COG1281 Disulfide bond chaperones of the HSP33 family - 22 ---------d--b-efghsnujxi-- DsbB [O] COG1495 Disulfide bond formation protein DsbB - 22 ------y------cefgh-nujx--- DjlA [O] COG1076 DnaJ-domain-containing proteins 1 - 10 ------y---r--c------------ PMT1 [O] COG1928 Dolichyl-phosphate-mannose--protein O-mannosyl transferase PMT1 - 33 -------qvdrlbcefghsnujxitw Tig [O] COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) - 32 ------y--d---cefghsn-j-it- FkpA [O] COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1 - 28 aompkz---d----efghsnu---t- SlpA [O] COG1047 FKBP-type peptidyl-prolyl cis-trans isomerases 2 - 3 ---------d-l---------j---- - [O] COG3823 Glutamine cyclotransferase - 13 -------q--r---efgh-n-j---- GlnE [OT] COG1391 Glutamine synthetase adenylyltransferase - 6 --------------e-gh-n------ GrxB [O] COG2999 Glutaredoxin 2 - 52 aom-k-y-vdrlbcefghsn-jx-t- GrxC [O] COG0695 Glutaredoxin and related proteins - 19 -o----y------cefghsn-jx--- - [O] COG0278 Glutaredoxin-related proteins - 20 ------y----lbcef--sn-j---w BtuE [O] COG0386 Glutathione peroxidase - 101 ------y----l-cefghsn-jx--- Gst [O] COG0625 Glutathione-S-transferases - 10 ---------d---cefg---uj---- HslJ [O] COG3187 Heat shock protein - 12 a-m-k--q-----ce-----u----- HypF [O] COG0068 Hydrogenase maturation factor - 14 a-m-k--------ce--h--u----- HypC [O] COG0298 Hydrogenase maturation factor - 19 aompkz-q-----ce-----u----- HypE [O] COG0309 Hydrogenase maturation factor - 13 a-m-k--q-----ce-----u----- HypD [O] COG0409 Hydrogenase maturation factor - 3 a-m----------------------- HypE [O] COG1973 Hydrogenase maturation factor - 5 -------q-d---c-f-----j---- HupE [O] COG2370 Hydrogenase/urease accessory protein - 33 -------qvdrlbcefghsnujxitw - [O] COG1214 Inactive homologs of metal-dependent proteases, putative molecular chaperones - 12 ---------d---cefg-snuj---- Aat [O] COG2360 Leu/Phe-tRNA-protein transferase - 76 aompkzyqvdrlbcefghsnujx-t- HflC [O] COG0330 Membrane protease subunits, stomatin/prohibitin homologs - 44 aompkzyqvdrlbcefghsnujxitw QRI7 [O] COG0533 Metal-dependent proteases with possible chaperone activity - 79 -omp--yqvdrlbcefghsnujxitw DnaK [O] COG0443 Molecular chaperone - 52 aompkzyqvdr-bcefg-s--jx--- IbpA [O] COG0071 Molecular chaperone (small heat shock protein) - 39 -omp--yqvdrlbcefghsnujxitw GrpE [O] COG0576 Molecular chaperone GrpE (heat shock protein) - 23 ------y---r-bcefghs-ujx-t- HtpG [O] COG0326 Molecular chaperone, HSP90 family - 45 -omp--yqvdrlbcefghsnujxitw DnaJ [O] COG0484 Molecular chaperones (contain C-terminal Zn finger domain) - 55 -o----y-vd---cefg-snuj--tw CbpA [O] COG2214 Molecular chaperones, DnaJ class - 26 a-m----q-dr-bcef-h--uj---w HypB [OK] COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase - 37 aompk--q---lbcefghsnujx--- NrdG [O] COG0602 Organic radical activating enzymes - 67 ------yqvd-lbcefghsnujx-t- SurA [O] COG0760 Parvulin-like peptidyl-prolyl isomerase - 36 -om---y--drlbcefghsnuj--tw MsrA [O] COG0225 Peptide methionine sulfoxide reductase - 52 -om---y--drlbcefghsnuj--t- PpiB [O] COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family - 52 aompkzyqvdrlbcefghs-ujxit- AhpC [O] COG0450 Peroxiredoxin - 11 ------y------c--gh-n-j---- AHP1 [O] COG0678 Peroxiredoxin - 39 -o-p-zyqvdr-bcefghsnuj---- Bcp [O] COG1225 Peroxiredoxin - 14 -------q--rlb-efgh--u----- Tpx [O] COG2077 Peroxiredoxin - 24 aompk---v---b-efgh------t- LonB [O] COG1067 Predicted ATP-dependent protease - 28 -------qvdrlbcefghsnujxit- Sms [O] COG1066 Predicted ATP-dependent serine protease - 23 --m----qvdr--cefghsnuj--t- - [O] COG0606 Predicted ATPase with chaperone activity - 3 a-m----------------------- - [O] COG1223 Predicted ATPases of the AAA+ class - 9 --m-k----d---c-f-----j---- - [O] COG2192 Predicted carbamoyl transferase, NodU family - 10 -o----y------cefg----j---- ECM4 [O] COG0435 Predicted glutathione S-transferase - 6 ----------rl------s--j---- PepO [O] COG3590 Predicted metalloendopeptidase - 11 aompk-yq------------------ GIM5 [O] COG1730 Predicted prefoldin, molecular chaperone implicated in de novo protein folding - 6 -------------c-fg----j---- EGL-9 [O] COG3751 Predicted proline hydroxylase - 3 -------------c-f-----j---- - [O] COG3484 Predicted proteasome-type protease - 4 ---------------fg----j---- - [O] COG3531 Predicted protein-disulfide isomerase - 42 aomp---qv---bcefgh-nuj---- SirA [O] COG0425 Predicted redox protein, regulator of disulfide bond formation - 25 ---p-----d-lb-efg-s--j---w OsmC [O] COG1764 Predicted redox protein, regulator of disulfide bond formation - 25 --mpkz-qvd--b-efg--n-j---w - [O] COG1765 Predicted redox protein, regulator of disulfide bond formation - 11 aompkzy------------------- GimC [O] COG1382 Prefoldin, chaperonin cofactor - 9 aompkz-------------------- - [O] COG1370 Prefoldin, molecular chaperone implicated in de novo protein folding, alpha subunit - 58 aompkzyqv-r-b-efghs-ujx-t- HslV [O] COG0638 Proteasome protease subunit - 27 aom-kz--v-----efg-snuj---- Pcm [O] COG2518 Protein-L-isoaspartate carboxylmethyltransferase - 37 ao-----q-dr-bcefghsnujxi-- DsbG [O] COG1651 Protein-disulfide isomerase - 7 ------y--------fg-s-uj---- - [O] COG2935 Putative arginyl-tRNA:protein arginylyltransferase - 20 a---kzy---r--c--gh---j---- STE14 [O] COG2020 Putative protein-S-isoprenylcysteine methyltransferase - 7 ----k----drlb------------- Pcp [O] COG2039 Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) - 38 a-mpkz-qv-rl--efgh-------- PflA [O] COG1180 Pyruvate-formate lyase-activating enzyme - 8 -------q--r-bc-----n------ ResB [O] COG1333 ResB protein required for cytochrome c biosynthesis - 8 ------y-------efg------i-- Ptr [O] COG1025 Secreted/periplasmic Zn-dependent peptidases, insulinase-like - 19 ----------r-b-efghsn-jx-t- - [O] COG2919 Septum formation initiator - 62 ao---zyq-drlbc-fg-snuj---w AprE [O] COG1404 Subtilisin-like serine proteases - 230 aompkzyqvdrlbcefghsnujxitw TrxA [OC] COG0526 Thiol-disulfide isomerase and thioredoxins - 11 ----------r---efghs--j---- - [O] COG3118 Thioredoxin domain-containing protein - 75 aompkzyqvdrlbcefghsnujxitw TrxB [O] COG0492 Thioredoxin reductase - 26 ao----y-----bcefghs-ujxi-- - [O] COG0694 Thioredoxin-like proteins and domains - 5 -------qv-----------u----- - [O] COG2143 Thioredoxin-related protein - 80 -om---yqvdrlbcefghsnujxit- DegQ [O] COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain - 11 ----------r---efgh-n-j---- GlnD [O] COG2844 UTP:GlnB (protein PII) uridylyltransferase - 3 ---------------fg----j---- - [O] COG3526 Uncharacterized BCR - 13 ---------d----ef-hs--j---- CcmH [O] COG3088 Uncharacterized protein involved in biosynthesis of c-type cytochromes - 6 -------q------ef-h-------- FdhE [O] COG3058 Uncharacterized protein involved in formate dehydrogenase formation - 16 -o---zyq-dr-bc-f--s--jx--- CtaA [O] COG1612 Uncharacterized protein required for cytochrome oxidase assembly - 11 ---------d--bcef-h--uj---w UreE [O] COG2371 Urease accessory protein UreE - 12 ---------dr-bcef-h--uj---w UreF [O] COG0830 Urease accessory protein UreF - 11 ---------d--bcef-h--uj---w UreH [O] COG0829 Urease accessory protein UreH - 19 -----z---dr-b-ef-----j---- XdhC [O] COG1975 Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family - 74 aompkzyq-drlbcefghsnuj---- HtpX [O] COG0501 Zn-dependent protease with chaperone function - 33 -------qvdrlbcefghsnujxitw SmpB [O] COG0691 tmRNA-binding protein - 18 -------q------efghsnujxi-- KdsA [M] COG2877 3-Deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase - 18 -------q------efghsnujxi-- KdtA [M] COG1519 3-Deoxy-D-manno-octulosonic-acid transferase - 21 ----k--q----bcef--s--j---- ArnT [M] COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family - 24 a------q--rlbc-fghsnujx--- TagG [M] COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component - 17 -------q------ef-h-nuj---- RfaE [M] COG2870 ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase - 50 -------q-----cefghsnuj---- RfaF [M] COG0859 ADP-heptose:LPS heptosyltransferase - 19 -------q-----cefghsnujxi-- LpxA [M] COG1043 Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase - 33 -------q-drlbcefghsnujx-t- Alr [M] COG0787 Alanine racemase - 27 -------qvdr--cefgh-nujxit- Lnt [M] COG0815 Apolipoprotein N-acyltransferase - 14 a---k------lb-e--h--uj---- RacX [M] COG1794 Aspartate racemase - 12 --------------efg---uj---- Blc [M] COG3040 Bacterial lipocalin - 8 ---------dr-bc------------ PenP [M] COG2367 Beta-lactamase class A - 62 ----kz---drlbcef--s--jx--- AmpC [M] COG1680 Beta-lactamase class C and other penicillin binding proteins - 5 ------------bc-f----uj---- - [M] COG2602 Beta-lactamase class D - 18 -------q------efghsnujxi-- KdsB [M] COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase - 8 -------------c---h-nu----- NeuA [M] COG1083 CMP-N-acetylneuraminic acid synthetase - 4 -----------------h-nu----- KpsE [M] COG3524 Capsule polysaccharide export protein - 4 -----------------h-nu----- KpsS [M] COG3562 Capsule polysaccharide export protein - 4 -----------------h-nu----- KpsC [M] COG3563 Capsule polysaccharide export protein - 5 -------------c-f-----j---- OprB [M] COG3659 Carbohydrate-selective porin - 63 -------qvdrlbcefghsnujxit- FtsI [M] COG0768 Cell division protein FtsI/penicillin-binding protein 2 - 22 ---------drlbcefghsn-jx-t- FtsQ [M] COG1589 Cell division septal protein - 5 --------------e-gh-------- OapA [M] COG3061 Cell envelope opacity-associated protein A - 10 ------------b--------j---- SleB [M] COG3773 Cell wall hydrolyses involved in spore germination - 69 ---------drlbcefghsnuj-i-- Spr [M] COG0791 Cell wall-associated hydrolases (invasion-associated proteins) - 11 --------------ef-h-------- WzzB [M] COG3765 Chain length determinant protein - 21 -o--------r-b-efgh-n----t- BetT [M] COG1292 Choline-glycine betaine transporter - 30 -------q-dr---efg---uj---- Cfa [M] COG2230 Cyclopropane fatty acid synthase and related methyltransferases - 16 aompkzyq---lb------------- TagD [MI] COG0615 Cytidylyltransferase - 39 -------qvdrlbcefghsnujxit- DdlA [M] COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes - 44 ----------rlb-efghsn-jxit- DacC [M] COG1686 D-alanyl-D-alanine carboxypeptidase - 13 -----------lbc--ghs-----t- VanY [M] COG1876 D-alanyl-D-alanine carboxypeptidase - 16 ---------dr-bcefghsn------ DacB [M] COG2027 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) - 6 ----------r--ce------j---- DdpX [M] COG2173 D-alanyl-D-alanine dipeptidase - 22 --------vd-lbcefghsnuj---- DgkA [M] COG0818 Diacylglycerol kinase - 26 -------qvdr-bcefghsnuj-it- GcpE [M] COG0821 Essential bacterial protein, involved in density-dependent regulation of peptidoglycan biosynthesis - 18 a-m----q--r--cefg-s-uj---- Gmd [M] COG1089 GDP-D-mannose dehydratase - 42 -ompkzyqvdrlbcefghsnuj-it- GlmS [M] COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains - 26 -------q-drlbcefgh-nuj--t- MurI [M] COG0796 Glutamate racemase - 18 -----------------h-nuj---- - [M] COG3306 Glycosyltransferase involved in LPS biosynthesis - 237 aompkzyqvdrlbcefghsnujx-tw WcaA [M] COG0463 Glycosyltransferases involved in cell wall biogenesis - 36 a-mpk-yq---lbcef-----j---- - [M] COG1215 Glycosyltransferases, probably involved in cell wall biogenesis - 4 -----------l-----h----x--- - [M] COG3475 LPS biosynthesis protein - 19 ---------drlbcefghs--j---- MscL [M] COG1970 Large-conductance mechanosensitive channel - 22 -------------cefghsnujx--- RfaL [M] COG3307 Lipid A core - O-antigen ligase and related enzymes - 19 -------q-----cefghsnujxi-- LpxB [M] COG0763 Lipid A disaccharide synthetase - 7 -----------l---------j---- RgpF [M] COG3754 Lipopolysaccharide biosynthesis protein - 18 ------------b-e--h--u-x--- RfaJ [M] COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases - 23 -------q-----cefghsnujx-t- RlpA [M] COG0797 Lipoproteins - 8 -----------l--e---s--j---- Acm [M] COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase) - 21 ao--k--qvd---cefg-s-uj---- CpsB [M] COG0836 Mannose-1-phosphate guanylyltransferase - 6 ------y---------gh-------- OCH1 [M] COG3774 Mannosyltransferase OCH1 and related enzymes - 73 -------qvdrlbcefghsnujx-t- MrcA [M] COG0744 Membrane carboxypeptidase (penicillin-binding protein) - 6 --------------efg-s--j---- MdoH [M] COG2943 Membrane glycosyltransferases - 5 --------------e-gh-------- TolA [M] COG3064 Membrane protein involved in colicin uptake - 112 -------qvdrlbcefghsnujx-t- NlpD [M] COG0739 Membrane proteins related to metalloendopeptidases - 12 -------------cefgh-n-j---- MltA [M] COG2821 Membrane-bound lytic murein transglycosylase - 16 --------------efghsn-j---- MltB [M] COG2951 Membrane-bound lytic murein transglycosylase B - 5 --------------e--h---j---- MepA [M] COG3770 Murein endopeptidase - 26 -------qvdrlbcefghsnujx--- GlmU [M] COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) - 56 -------q-dr-bcefghsnuj-it- AmiC [M] COG0860 N-acetylmuramoyl-L-alanine amidase - 15 --------------efghsn-j---- AmpD [M] COG3023 Negative regulator of beta-lactamase expression - 4 --------------efg--------- Tsx [M] COG3248 Nucleoside-binding outer membrane protein - 151 aompk-yqvdrlbcefghsnuj--t- WcaG [MG] COG0451 Nucleoside-diphosphate-sugar epimerases - 52 aompkzyq-dr-bc-f-hsnuj--t- GCD1 [MJ] COG1208 Nucleoside-diphosphate-sugar pyrophosphorylases involved in lipopolysaccharide biosynthesis/translation initiation factor eIF2B subunits - 11 -----------------h-n-jx--- - [M] COG3637 Opacity protein and related surface antigens - 19 -------q------efghsnujx-t- Imp [M] COG1452 Organic solvent tolerance protein OstA - 5 --------------ef-h-------- SlyB [M] COG3133 Outer membrane lipoprotein - 9 --------------efghsn------ LolB [M] COG3017 Outer membrane lipoprotein involved in outer membrane biogenesis - 18 --------------efghsnujx-t- LolA [M] COG2834 Outer membrane lipoprotein-sorting protein - 8 --------------e--h-nu----- PldA [M] COG2829 Outer membrane phospholipase A - 65 -------q-----cefghsnujx--- TolC [MN] COG1538 Outer membrane protein - 16 -------qvd----efgh-n---it- HlpA [M] COG2825 Outer membrane protein - 24 --------------e-gh-------- OmpC [M] COG3203 Outer membrane protein (porin) - 9 --------------e-gh---j---- OmpV [M] COG3713 Outer membrane protein V - 11 --------------efghs--jx--- OmpW [M] COG3047 Outer membrane protein W - 60 -------q--r---efghsnujxit- OmpA [M] COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins - 6 -----------lbc--g----j---- - [M] COG3049 Penicillin V acylase and related amidases - 14 ao-------drlb-ef----uj---- OpuBC [M] COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) - 37 ---p---qvd--bcefghsnujxit- Prc [M] COG0793 Periplasmic protease - 28 -------q------efghsnuj---- TonB [M] COG0810 Periplasmic protein TonB, links inner and outer membranes - 21 -------qv----cefghsnuj---- Wza [M] COG1596 Periplasmic protein involved in polysaccharide export - 24 --------v--lb-efgh-nuj---- MdoB [M] COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily - 8 ----------r----f-----j---- PlcC [M] COG3511 Phospholipase C - 30 -------qvdrlbcefghsnujx-tw GidB [M] COG0357 Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division - 34 -------qvdrlbcefghsnujxitw - [M] COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis - 30 aom-k--q--rlbcefghs-ujx--- Ugd [M] COG1004 Predicted UDP-glucose 6-dehydrogenase - 16 ------y----lb-e-gh---j--tw CotS [M] COG0510 Predicted choline kinase involved in LPS biosynthesis - 256 aompkzyqvdrlbcefghsnujx-t- RfaG [M] COG0438 Predicted glycosyltransferases - 11 ------y----lb--f---nu---t- DltB [M] COG1696 Predicted membrane protein involved in D-alanine export - 52 aompkz-qvdrlbcefghsnujxit- - [M] COG0750 Predicted membrane-associated Zn-dependent proteases 1 - 22 --m-----v---b--fghsnujx-t- - [MG] COG1086 Predicted nucleoside-diphosphate sugar epimerases - 3 ------------------s--jx--- - [M] COG3660 Predicted nucleoside-diphosphate-sugar epimerase - 51 -o----yq-d-lbcefghs--j---- - [MG] COG0702 Predicted nucleoside-diphosphate-sugar epimerases - 38 ------yqvd---cefghsnujxit- - [M] COG0729 Predicted outer membrane protein - 9 --------------e--h-n------ - [M] COG3468 Predicted outer membrane protein - 12 -----------------h-n------ OmpU [M] COG3699 Predicted outer membrane protein - 17 --m-k---vd-lb-ef--s--j---- AgaS [M] COG2222 Predicted phosphosugar isomerases - 43 --m-k--qv-r-bcefgh-nuj--t- WecE [M] COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis - 9 a-m-kz-q-------f-----j---- - [M] COG1213 Predicted sugar nucleotidyltransferases - 28 a-m-kz-q----b-efghsnujxi-- GutQ [M] COG0794 Predicted sugar phosphate isomerase involved in capsule formation - 33 -------qvdrlbcefghsnujxitw Lgt [M] COG0682 Prolipoprotein diacylglyceryltransferase - 9 --m-k-------b------------- LytB [M] COG2247 Putative cell wall-binding domain - 18 ----k----d-lb-efgh-n------ LrgB [M] COG1346 Putative effector of murein hydrolase - 10 ---------drlb------n-j---- PgsA [M] COG2843 Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) - 3 ----------rlb------------- TnrB3 [M] COG3559 Putative exporter of polyketide antibiotics - 12 --m-k------lb------------- TagB [M] COG1887 Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC - 22 --------------ef-hsn------ FhaB [M] COG3210 Putative hemagglutinin/hemolysin - 23 ---------dr-bc--g----j---- - [M] COG3409 Putative peptidoglycan-binding domain-containing protein - 4 --------------e-g-s------- - [M] COG3137 Putative salt-induced outer membrane protein - 9 --------------efghsn------ RlpB [M] COG2980 Rare lipoprotein B - 28 ------------b-ef-----j---- RhsA [M] COG3209 Rhs family protein - 21 -------q---lb-efghs-ujxit- MreC [M] COG1792 Rod shape-determining protein - 11 ------------b-efghs-----t- MreD [M] COG2891 Rod shape-determining protein - 20 aom-k---v---b------------- - [M] COG1361 S-layer domain - 8 ---------dr--c-------j---- - [M] COG2335 Secreted and surface protein containing fasciclin-like repeats - 10 --m---------b------nuj--t- SpsE [M] COG2089 Sialic acid synthase - 80 aompkz-qvdrlbcefg-snujx-t- MscS [M] COG0668 Small-conductance mechanosensitive channel - 8 --------------ef-h---j---- - [M] COG3264 Small-conductance mechanosensitive channel - 73 -------qv---bcefghsnujx-t- MltE [M] COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) - 13 --m--------lb------------- SrtA [M] COG3764 Sortase (surface protein transpeptidase) - 11 ---------d-lbcefg----j---- - [M] COG1247 Sortase and related acyltransferases - 5 --m---------b--------j--t- SpsF [M] COG1861 Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog - 8 --------------e-ghs------- Slp [M] COG3065 Starvation-inducible outer membrane lipoprotein - 28 -o------vd--bcefghsnuj---- WcaJ [M] COG2148 Sugar transferases involved in lipopolysaccharide synthesis - 13 --------------efghsnujx--- VacJ [M] COG2853 Surface lipoprotein - 12 --------vd--bce-g-s--j--t- WecG [M] COG1922 Teichoic acid biosynthesis proteins - 25 -------q-----cefghsnujxi-- LpxD [M] COG1044 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase - 19 -------q-----cefghsnujxi-- LpxC [M] COG0774 UDP-3-O-acyl-N-acetylglucosamine deacetylase - 14 --m-k---v-----efghs--j---- WecC [M] COG0677 UDP-N-acetyl-D-mannosaminuronate dehydrogenase - 22 -om-k---vd-lbcefghsnu-x--- WecB [M] COG0381 UDP-N-acetylglucosamine 2-epimerase - 35 -------qvdrlbcefghsnujxit- MurA [M] COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase - 34 -------qvdrlbcefghsnujxit- MurG [M] COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase - 31 -------qvdrlbcefghsnujxit- MurB [M] COG0812 UDP-N-acetylmuramate dehydrogenase - 40 -------qvdrlbcefghsnujxit- MurC [M] COG0773 UDP-N-acetylmuramate-alanine ligase - 32 --m----qvdrlbcefghsnujxit- MurD [M] COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase - 55 --m-k-yqvdrlbcefghsnujxit- Rfe [M] COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase - 32 --m----qvdrlbcefghsnujxit- MurF [M] COG0770 UDP-N-acetylmuramyl pentapeptide synthase - 38 --m----qvdrlbcefghsnujxit- MurE [M] COG0769 UDP-N-acetylmuramyl tripeptide synthase - 8 --m------dr---e-----u----w Glf [M] COG0562 UDP-galactopyranose mutase - 29 --m---yq-d-lbcefgh-nuj---w GalE [M] COG1087 UDP-glucose 4-epimerase - 36 --m-k--q--rlb-efghsnuj--tw GalU [M] COG1210 UDP-glucose pyrophosphorylase - 4 --------------e-gh-------- - [M] COG3056 Uncharacterized lipoprotein - 5 --------------e-gh-------- NlpB [M] COG3317 Uncharacterized lipoprotein - 4 --------------e-g-------t- CutF [MP] COG3015 Uncharacterized lipoprotein NlpE involved in copper resistance - 6 ---------------fg-sn------ TspA [M] COG3170 Uncharacterized membrane protein - 11 -------q-d---cef---n-j---- CsgG [M] COG1462 Uncharacterized protein involved in formation of curli polymers - 10 --------------efg--n--x--- AsmA [M] COG2982 Uncharacterized protein involved in outer membrane biogenesis - 4 a-----------b-----------t- SpoVG [M] COG2088 Uncharacterized protein, involved in the regulation of septum location - 28 a-mpkz---drlbcef-hsnuj---- RfbC [M] COG1898 dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes - 26 aompkz-q-drlbcef--sn-jx--- RfbD [M] COG1091 dTDP-4-dehydrorhamnose reductase - 28 a-mpkz---drlbcef-hsn-j---- RfbB [M] COG1088 dTDP-D-glucose 4,6-dehydratase - 32 aompkz--vdrlbcef--sn-j---- RfbA [M] COG1209 dTDP-glucose pyrophosphorylase - 24 -------q--r--cefghsnujx--- Ttg2A [N] COG1127 ABC-type exporter of toluene and related compounds, ATPase component - 12 --------------efghsnujx--- Ttg2D [N] COG2854 ABC-type exporter of toluene and related compounds, periplasmic component - 87 -o-pkz-qvdrlbcefghs--j--tw MalK [N] COG3839 ABC-type sugar transport systems, ATPase components - 25 aompkz-------------------- FlaB [N] COG1681 Archaeal flagellins - 45 -------q-d---cefghsnujxi-- ExbD [N] COG0848 Biopolymer transport protein - 46 --m----q-d---cefghsnujxi-- TolQ [N] COG0811 Biopolymer transport proteins - 4 --------------efg--------- CheZ [N] COG3143 Chemotaxis protein - 20 ao--k---v---b---g---u---t- CheC [NT] COG1776 Chemotaxis protein CheC, inhibitor of MCP methylation - 30 ao--k---vd--bcefg-s-uj--t- CheA [N] COG0643 Chemotaxis protein histidine kinase and related kinases - 11 ao--k---v---b--fg----j--t- CheD [NT] COG1871 Chemotaxis protein; stimulates methylation of MCP proteins - 23 ao--k---v---b-efg-s-uj--t- CheB [NT] COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain - 53 ao--k---v---bcefg-s-uj--t- CheW [N] COG0835 Chemotaxis signal transduction protein - 38 -om------dr---ef----uj---- BetA [N] COG2303 Choline dehydrogenase and related flavoproteins - 8 -------------c-fg-sn-j---- PilN [N] COG3166 Fimbrial assembly protein - 5 ---------------fg-sn------ PilO [N] COG3167 Fimbrial assembly protein - 5 ---------------fg-sn------ PilP [N] COG3168 Fimbrial assembly protein - 11 -------qv---b--fg---u---t- FlhF [N] COG1419 Flagellar GTP-binding protein - 12 -------qv-----efg---uj---- FlgH [N] COG2063 Flagellar basal body L-ring protein - 12 -------qv-----efg---uj---- FlgA [N] COG1261 Flagellar basal body P-ring biosynthesis protein - 51 -------qv---b-efg---uj--t- FlgE [N] COG1749 Flagellar basal body and hook proteins - 16 -------qv---b-efg---uj--t- FlgB [N] COG1815 Flagellar basal body protein - 16 -------qv---b-efg---uj--t- FlgC [N] COG1558 Flagellar basal body rod protein - 16 -------qv---b-efg---u---t- FliL [N] COG1580 Flagellar basal body-associated protein - 13 -------qv-----efg---uj--t- FlgI [N] COG1706 Flagellar basal-body P-ring protein - 8 ------------b-efg------i-- FliO [N] COG3190 Flagellar biogenesis protein - 10 --------v---b-efg------it- FliJ [N] COG2882 Flagellar biosynthesis chaperone - 24 -------qv---b-efg---uj-it- FliI [N] COG1157 Flagellar biosynthesis/type III secretory pathway ATPase - 5 --------------efg--------- - [N] COG3418 Flagellar biosynthesis/type III secretory pathway chaperone - 22 -------qv---b-efg---uj-it- FliF [N] COG1766 Flagellar biosynthesis/type III secretory pathway lipoprotein - 26 -------qv---b-efg---uj-it- FlhA [N] COG1298 Flagellar biosynthesis/type III secretory pathway protein - 17 --------v---b-efg---uj-it- FliH [N] COG1317 Flagellar biosynthesis/type III secretory pathway protein - 23 -------qv---b-efg---uj-it- FliP [N] COG1338 Flagellar biosynthesis/type III secretory pathway protein - 22 -------qv---b-efg---uj-it- FlhB [N] COG1377 Flagellar biosynthesis/type III secretory pathway protein - 23 -------qv---b-efg---uj-it- FliR [N] COG1684 Flagellar biosynthesis/type III secretory pathway protein - 22 -------qv---b-efg---uj-it- FliQ [N] COG1987 Flagellar biosynthesis/type III secretory pathway protein - 13 -------qv---b-efg---u---t- FliD [N] COG1345 Flagellar capping protein - 16 -------qv---b-efg---uj--t- FlgD [N] COG1843 Flagellar hook capping protein - 16 -------qv---b-efg---uj--t- FlgK [N] COG1256 Flagellar hook-associated protein - 16 -------qv---b-efg---uj--t- FliE [N] COG1677 Flagellar hook-basal body protein - 7 ------------b-efg--------- FliK [N] COG3144 Flagellar hook-length control protein - 17 -------qv---b-efg---uj--t- MotA [N] COG1291 Flagellar motor component - 25 -------qv---b-efg---uj--t- MotB [N] COG1360 Flagellar motor protein - 20 -------qv---b-efg---uj-it- FliG [N] COG1536 Flagellar motor switch protein - 15 -------qv---b-efg---uj--t- FliM [N] COG1868 Flagellar motor switch protein - 25 -------qv---b-efg---uj-it- FliN [N] COG1886 Flagellar motor switch/type III secretory pathway protein - 14 -------qv---b-efg---u---t- FliS [N] COG1516 Flagellar protein - 49 -------qv---b-efg---uj--t- FlgL [N] COG1344 Flagellin and related hook-associated proteins - 16 --------v--lb-efg--------- FlgJ [N] COG1705 Flagellum-specific muramidase - 5 ----------r----fg--------- ExeA [N] COG3267 General secretion pathway protein A - 4 -------q------e-g--------- GspC [N] COG3031 General secretion pathway protein C - 6 --------------efg-s--j---- GspK [N] COG3156 General secretion pathway protein K - 3 --------------efg--------- EtpM [N] COG3149 General secretion pathway protein M - 39 -------qvd---cefghsnuj-i-- GspD [N] COG1450 General secretory pathway protein D - 31 -------qvd-lbcefghsn-j-i-- HofF [N] COG1459 General secretory pathway protein F - 5 --------------efg----j---- GspL [N] COG3297 General secretory pathway protein L - 103 -------qvd--bcefghsnuj-i-- HofG [N] COG2165 General secretory pathway proteins G and H and related periplasmic/secreted proteins - 6 --------------efgh-------- CcmD [N] COG3114 Heme exporter protein D - 19 -------------cef-hsnuj---- FhaC [N] COG2831 Hemolysin activation/secretion protein - 81 -o----yqvdrlbcefghsnujxitw TlyC [N] COG1253 Hemolysins and related proteins containing CBS domains - 31 ----------r---efghsnujxi-- HtrB [N] COG1560 Lauroyl/myristoyl acyltransferase involved in lipid A biosynthesis - 18 -------q------efghsnujxi-- LpxK [N] COG1663 Lipid A biosynthesis protein LpxK, tetraacyldisaccharide-1-P 4'-kinase - 33 -------qvdrlbcefghsnujxitw LspA [N] COG0597 Lipoprotein signal peptidase - 27 -------q-drlb--fgh-----it- LytE [N] COG1388 LysM-repeat proteins and domains - 34 ------yqvdrlbcefghsnujxitw LepA [N] COG0481 Membrane GTPase LepA - 18 --m-k---vdr--cefghs--j---- - [NO] COG1585 Membrane protein implicated in regulation of membrane protease activity - 12 a--pkz-q----b--f-----j---- - [NO] COG1030 Membrane-bound serine protease (ClpP class) - 203 ao--k---vd--bcefg-s-uj--t- Tar [N] COG0840 Methyl-accepting chemotaxis protein - 26 ao--k---v---b-efg---uj--t- CheR [NT] COG1352 Methylase of chemotaxis methyl-accepting proteins - 31 -------------cef--s--j---- FimD [N] COG3188 PapC-like porin protein involved in fimbrial biogenesis - 38 ---------d---cef--s--j---- FimC [N] COG3121 PapD-like chaperone involved in fimbrial biogenesis - 19 a------------cefghs-ujxi-- TolB [N] COG0823 Periplasmic component of the Tol biopolymer transport system - 56 aompkz-qvdr-bcefghsnujxit- SppA [NO] COG0616 Periplasmic serine proteases (ClpP class) - 56 --------------ef--s------- FimA [N] COG3539 Pilin - 7 ---------------f-h---j---- PilA [N] COG3847 Pilin - 5 ---------------f--sn------ PilC [N] COG3419 Pilus tip-associated protein - 11 --------------efghs--j---- VapI [N] COG3093 Plasmid maintenance system antidote protein - 5 ----------------ghs--j---- HigB [N] COG3549 Plasmid maintenance system killer protein - 25 ----------r---efg-s--j---- ParE [N] COG3668 Plasmid stabilization system protein - 8 aompkz-------------------- FlaH [N] COG2874 Predicted ATPases involved in biogenesis of archaeal flagella - 33 -------qvd-lbcefghsnuj-i-- GspE [N] COG2804 Predicted ATPases involved in pili biogenesis, PilB homologs - 22 -------qvd---cefg-sn------ PilT [N] COG2805 Predicted ATPases involved in pili biogenesis, PilT homologs - 5 --------v---b---g-------t- - [N] COG1406 Predicted inhibitor of MCP methylation, homolog of CheC - 24 ---------drlbcefghsnujx--- TypA [N] COG1217 Predicted membrane GTPase involved in stress response - 7 --------------e-g---u----- FlgN [N] COG3417 Predicted periplasmic lipoprotein - 3 ---------------fg----j---- - [N] COG3489 Predicted periplasmic lipoprotein - 3 --------v----c------u----- - [N] COG1724 Predicted periplasmic or secreted lipoprotein - 6 -----------l-----h--u----w - [N] COG2503 Predicted secreted acid phosphatase - 31 -------q-drlbcefghsnujxitw SecG [N] COG1314 Preprotein translocase subunit - 35 -------qvdrlbcefghsnujxitw SecA [N] COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase) - 14 --m-----------efghsn-jx--- SecB [N] COG1952 Preprotein translocase subunit SecB - 35 -om-k--qvdr-bcefghsnujxit- SecD [N] COG0342 Preprotein translocase subunit SecD - 33 -------qvdrlbcefghsnujxitw SecE [N] COG0690 Preprotein translocase subunit SecE - 32 -om-k--qvdr-bcefghsnujxit- SecF [N] COG0341 Preprotein translocase subunit SecF - 44 aompkzyqvdrlbcefghsnujxitw SecY [N] COG0201 Preprotein translocase subunit SecY - 27 -------qv-rlb-efghsnujxit- YajC [N] COG1862 Preprotein translocase subunit YajC - 38 ------yqvdrlbcefghsnujxitw YidC [N] COG0706 Preprotein translocase subunit YidC - 4 ---------------fg--n-j---- Doc [N] COG3654 Prophage maintenance system killer protein - 51 -------qvdrlbcefghsnujxit- ClpP [NO] COG0740 Protease subunit of ATP-dependent Clp proteases - 10 aompkzy------------------- Sss1 [N] COG2443 Protein translocase subunit Sss1 - 6 -ompk--------------------- FlaC [N] COG3352 Putative archaeal flagellar protein C - 8 -ompk--------------------- FlaD [N] COG3351 Putative archaeal flagellar protein D/E - 5 -ompk--------------------- FlaF [N] COG3353 Putative archaeal flagellar protein F - 7 -ompk--------------------- FlaG [N] COG3354 Putative archaeal flagellar protein G - 10 --------------efgh-n-j---- TfoX [N] COG3070 Regulator of competence-specific genes - 31 ao-p-z-q-dr-bcefghsnujx--- TatC [N] COG0805 Sec-independent protein secretion pathway component TatC - 52 ao-p-z-q-dr-bcefghsnujx--- TatA [N] COG1826 Sec-independent protein secretion pathway components - 65 aompkzyqvdrlbcefghsnujxit- LepB [N] COG0681 Signal peptidase I - 37 aom-kz-qvd-lbcefghsnuj---- PppA [N] COG1989 Signal peptidase, cleaves prepilin-like proteins - 10 aompkzy------------------- SEC65 [N] COG1400 Signal recognition particle 19 kDa protein - 43 aompkzyqvdrlbcefghsnujxitw Ffh [N] COG0541 Signal recognition particle GTPase - 43 aompkzyqvdrlbcefghsnujxitw FtsY [N] COG0552 Signal recognition particle GTPase - 35 ao--kz--vd-lb--f-----j--tw Med [N] COG1744 Surface lipoprotein - 4 ---------------f--sn------ PilZ [N] COG3215 Type IV pilus assembly protein - 10 ------------------s-ujx--- VirB8 [N] COG3736 Type IV secretion system, component VirB8 - 5 ------------------s--j---- TrbF [N] COG3701 Type IV secretory pathway, TrbF components - 8 ------------------s-uj---- TrbL [N] COG3846 Type IV secretory pathway, TrbL components - 15 ------------------s-ujx--- VirB10 [N] COG2948 Type IV secretory pathway, VirB10 components - 48 aompkz----r----f-hs-ujx--- VirB11 [N] COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis - 7 ------------------s--jx--- VirB2 [N] COG3838 Type IV secretory pathway, VirB2 components (pilins) - 15 ------------------s-ujx--- VirB4 [N] COG3451 Type IV secretory pathway, VirB4 components - 8 ------------------s--jx--- VirB6 [N] COG3704 Type IV secretory pathway, VirB6 components - 17 ------------------s-ujx--- VirB9 [N] COG3504 Type IV secretory pathway, VirB9 components - 9 ------------------s-uj---- VirD2 [N] COG3843 Type IV secretory pathway, VirD2 components (relaxase) - 8 ------------------s-ujx--- VirD4 [N] COG3505 Type IV secretory pathway, VirD4 components - 9 -------qv---b--fg---u----- FlaG [N] COG1334 Uncharacterized flagellar protein FlaG - 8 aompkz-------------------- FlaJ [N] COG1955 Uncharacterized membrane component of archaeal flagella - 17 --------v----cefghs--j---- GumC [N] COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis - 6 ----------------ghsn------ PilF [N] COG3063 Uncharacterized protein involved in fimbrial biogenesis - 5 ---------------f-----j---- CpaB [N] COG3745 Uncharacterized protein involved in type IV pili biogenesis - 5 --------v---b-----------t- FlgEa [N] COG1582 Uncharacterized protein, possibly involved in motility - 19 ------yq--r--cefghs-ujxi-- CysQ [P] COG1218 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase - 46 aom-kz-qvdrlbcefgh-nujxit- ZnuA [P] COG0803 ABC-type Mn/Zn transport system, periplasmic Mn/Zn-binding (lipo)protein (surface adhesin A) - 41 aom-kz-qvd-lbcefgh-nujxit- ZnuC [P] COG1121 ABC-type Mn/Zn transport systems, ATPase component - 49 aom-kz-qvdrlbcefgh-nujxit- ZnuB [P] COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components - 70 aompk---vdrlbcefgh-nuj---w FepC [PH] COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components - 91 aompkz--vdrlbcefgh-nuj---- FecB [P] COG0614 ABC-type cobalamin/Fe3+-siderophores transport systems, periplasmic components - 103 aompkz--vd-lbcefgh-nuj---w BtuC [PH] COG0609 ABC-type cobalamin/Fe3+-siderophores transport systems, permease components - 51 aom-kz--vdrlbce-gh------tw CbiO [P] COG1122 ABC-type cobalt transport system, ATPase component - 4 aom----------------------- CbiN [P] COG1930 ABC-type cobalt transport system, periplasmic component - 31 aom-kz--vdrlbce--h-------w CbiQ [P] COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters - 16 ------------b-efgh-n----t- AfuC [P] COG3841 ABC-type iron transport systems, ATPase components - 34 aompkz-q-dr-bcefgh--uj---- ModA [P] COG0725 ABC-type molybdate transport system, periplasmic component - 10 ------y--drlb-e--h-------- ModF [P] COG1119 ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA - 49 a-mp----vd--bcef-hs--j---- TauB [P] COG1116 ABC-type nitrate/sulfonate/taurine/bicarbonate transport systems, ATPase components - 61 a-----y-vd--bcefgh---j-i-- TauA [P] COG0715 ABC-type nitrate/sulfonate/taurine/bicarbonate transport systems, periplasmic components - 50 a-mp----vd--bcef-hs--j-i-- TauC [P] COG0600 ABC-type nitrate/sulfonate/taurine/bicarbonate transport systems, permease components - 38 aom-kz-qvdrlbcefghs-uj--tw PstB [P] COG1117 ABC-type phosphate transport system, ATPase component - 46 aom-kz-qvdrlbcefghs-uj--tw PstS [P] COG0226 ABC-type phosphate transport system, periplasmic component - 34 aom-kz-qvdrlbcefghs-uj--tw PstC [P] COG0573 ABC-type phosphate transport system, permease component - 34 aom-kz-qvdrlbcefghs-uj--tw PstA [P] COG0581 ABC-type phosphate transport system, permease component - 11 -o---------lb-ef-----j---- - [P] COG3638 ABC-type phosphate/phosphonate transport system, ATPase component - 19 -o---------lb-ef-----j---w - [P] COG3639 ABC-type phosphate/phosphonate transport system, permease component - 17 ----------r-bcefg-sn-j---- Sbp [P] COG1613 ABC-type sulfate transport system, periplasmic component - 32 a-mpk-----r-bcefghsnuj---- CysA [P] COG1118 ABC-type sulfate/molybdate transport systems, ATPase component - 55 aompkz-q-dr-bcefghsnuj---- CysU [P] COG0555 ABC-type sulfate/molybdate transport systems, permease components - 12 a---kzyq-d--bc------u----- MET3 [P] COG2046 ATP sulfurylase - 22 a---kzyq-dr-bcefg-s-uj---- CysC [P] COG0529 Adenylylsulfate kinase and related kinases - 12 -o--k-y-vd--b-ef--s------- PhoA [P] COG1785 Alkaline phosphatase - 34 a-mp--yqvdrlbcef--sn-j---w AmtB [P] COG0004 Ammonia permeases - 47 ---------drlb-efghsnuj---w ArsC [P] COG1393 Arsenate reductase and related proteins, glutaredoxin family - 11 a-m-k-y-v-r-bc---h-n------ ACR3 [P] COG0798 Arsenite efflux pump ACR3 and related permeases - 25 -o--------r---ef-h---j---- AslA [P] COG3119 Arylsulfatase A and related enzymes - 17 ----------r--cefg-sn-j---- Bfr [P] COG2193 Bacterioferritin (cytochrome b1) - 9 -------------cefg-sn-j---- Bfd [P] COG2906 Bacterioferritin-associated ferredoxin - 10 ------y--dr-bce------j---- ChaA [P] COG0387 Ca2+/H+ antiporter - 23 aompk-yqv---bce-gh------t- ECM27 [P] COG0530 Ca2+/Na+ antiporter - 34 -om---y--drlbcefghsnuj---- CynT [P] COG0288 Carbonic anhydrase - 6 ------------b---gh--uj---- Cah [P] COG3338 Carbonic anhydrase - 26 ------y--d--b-efgh-nuj---- KatE [P] COG0753 Catalase - 12 ao----y---r-bce-g-s--j---- KatG [P] COG0376 Catalase (peroxidase I) - 46 --mp--yq--rlbcef-----j---w MgtA [P] COG0474 Cation transport ATPases - 87 aompkzyqvdrlbcefgh-nuj-itw ZntA [P] COG2217 Cation transport ATPases - 41 aompkzyq-drlbce-gh-n-j---- EriC [P] COG0038 Chloride channel protein EriC - 16 --m-----vd--bc-fg----j--t- ChrA [P] COG2059 Chromate transport protein ChrA - 24 ----k-yqvdrlb-ef-hsnuj---- CzcD [P] COG1230 Co/Zn/Cd efflux system component - 29 ao-p-zyqvd-lbc-f-h-nu----w CopZ [P] COG2608 Copper chaperone - 17 ------yq-dr-b-e-gh-n-j---- SodC [P] COG2032 Cu/Zn superoxide dismutase - 5 -------q-----cef---------- CynS [P] COG1513 Cyanate lyase - 10 ---------d--b-ef----u----- CynX [P] COG2807 Cyanate permease - 15 -------q-d----efgh--uj---- MauG [P] COG1858 Cytochrome c peroxidase - 47 -om-k-yq-d-lbcefghsnu--i-- CitT [P] COG0471 Di- and tricarboxylate transporters - 7 ---------d--b-ef---------- Fes [P] COG2382 Enterochelin esterase and related enzymes - 21 a-m-k--qvd-l-cefg-s-uj---- FeoB [P] COG0370 Fe2+ transport system - 17 a-m-k---vd-l-cefg-s-uj---- FeoA [P] COG1918 Fe2+ transport system - 18 --------------ef-----j---- FecR [PT] COG3712 Fe2+-dicitrate sensor, membrane component - 52 a--p-z-qvdrlbcefghsnuj--tw Fur [P] COG0735 Fe2+/Zn2+ uptake regulation proteins - 50 -o-p----vdr-bcef--s--j---- HcaA1 [PR] COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases - 18 a-m-----v-r-b-e-gh--u----w Ftn [P] COG1528 Ferritin-like protein - 5 a-------------e--h-------- NrfD [P] COG3301 Formate-dependent nitrite reductase, membrane component - 5 --------------e--h--u----- NrfA [P] COG3303 Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit - 18 ------y----lb-efgh-------- FocA [P] COG2116 Formate/nitrite family of transporters - 12 ----------r---efg-sn-j---- CysN [P] COG2895 GTPases - Sulfate adenylate transferase subunit 1 - 11 ------y--d----efgh-n-j---- GntK [P] COG3265 Gluconate kinase - 5 ---------d-----f---n------ HemO [P] COG3230 Heme oxygenase - 7 --m----q-------fg---u----- - [P] COG2703 Hemerythrin - 16 a----zy-v---bcef-h-nu-x-t- FTR1 [P] COG0672 High-affinity Fe2+/Pb2+ permease - 12 -o-p-----dr--cef----uj---- KdpB [P] COG2216 High-affinity K+ transport system, ATPase chain B - 4 ---p------r---------u----- HoxN [P] COG3376 High-affinity nickel permease - 46 aom-kz-qvdrlbcefgh-nu---tw TrkA [P] COG0569 K+ transport systems, NAD-binding component - 11 -----------l--efg-s--j---- Kup [P] COG3158 K+ transporter - 11 -o-p-----dr--cef-----j---- KdpA [P] COG2060 K+-transporting ATPase, A chain - 11 -o-p-----dr--cef-----j---- KdpC [P] COG2156 K+-transporting ATPase, c chain - 60 a-mpkzyq-drlbcefghsnujx-t- KefB [P] COG0475 Kef-type K+ transport systems, membrane components - 79 aompkzyqvdrlbcefghsnujx--w Kch [P] COG1226 Kef-type K+ transport systems, predicted NAD-binding component - 42 ---------dr-bcefghsnujx--- TerC [P] COG0861 Membrane protein TerC, possibly involved in tellurium resistance - 41 -o-------drlb-efg--nuj---- EmrE [P] COG2076 Membrane transporters of cations and cationic drugs - 7 --------------ef-----j---- - [P] COG3454 Metal-dependent hydrolase involved in phosphonate metabolism - 27 --m-----v-r-bc-fg-sn-jxitw MgtE [P] COG2239 Mg/Co/Ni transporter MgtE (contains CBS domain) - 44 a-m-k-yqvdrlbcefghs-uj---- CorA [P] COG0598 Mg2+ and Co2+ transporters - 8 ------------b-ef---------- - [P] COG3546 Mn-containing catalase - 19 ---p--y--drlb-ef--sn-j---- MntH [P] COG1914 Mn2+ and Fe2+ transporters of the NRAMP family - 20 -om-k---vd--bc-fg-----x--- MnhC [P] COG1006 Multisubunit Na+/H+ antiporter - 17 -om-k---vd--b--fg-----x--- MnhG [P] COG1320 Multisubunit Na+/H+ antiporter - 18 -om-k---vd--b--fg-----x--- MnhE [P] COG1863 Multisubunit Na+/H+ antiporter - 26 -om-k---vd--bc-fg-----x--- MnhB [P] COG2111 Multisubunit Na+/H+ antiporter, MnhB subunit - 13 -om-k---vd--b--fg-----x--- MnhF [P] COG2212 Multisubunit Na+/H+ antiporter, MnhF subunit - 11 --------------e-gh--uj---- NhaA [P] COG3004 Na+/H+ antiporter - 6 --------------efgh-------- NhaB [P] COG3067 Na+/H+ antiporter - 29 a--pkz--v-r-bcefg--nuj-i-- ArsB [P] COG1055 Na+/H+ antiporter NhaD and related arsenite permeases - 13 -----------lb-efg---uj--t- NptA [P] COG1283 Na+/phosphate symporter - 37 aompk-y--drlbcefghs--j---- NhaP [P] COG0025 NhaP-type Na+/H+ and K+/H+ antiporters - 8 -----z----r-b-ef---------- NarY [P] COG1140 Nitrate reductase beta chain - 18 -------q--r-b-ef-----j---- NarK [P] COG2223 Nitrate/nitrite transporter - 4 -------------c-f---n------ NorB [P] COG3256 Nitric oxide reductase large subunit - 5 --m----------c-------j---- NifH [P] COG1348 Nitrogenase subunit NifH (ATPase) - 6 --m---------b--f---n------ NosD [P] COG3420 Nitrous oxidase accessory protein - 205 -------q-----cefghsnuj---- CirA [P] COG1629 Outer membrane receptor proteins, mostly Fe transport - 7 --------------efg-s------- MdoG [P] COG3131 Periplasmic glucans biosynthesis protein - 6 aomp--------b------------- - [P] COG1910 Periplasmic molybdate-binding protein (domain) - 7 aom-kz-------------------- - [P] COG1824 Permease, similar to cation transporters - 19 a-m-k---vd--b--fgh---j-i-- - [P] COG1392 Phosphate transport regulator (distant homolog of PhoU) - 51 aompkz-qvdrlbcefg-s--j--tw PhoU [P] COG0704 Phosphate uptake regulator - 5 ---------------f--s--j---- OprP [P] COG3746 Phosphate-selective porin - 49 aompk-y-vdr-b-efgh-nuj-i-- PitA [P] COG0306 Phosphate/sulphate permeases - 5 ------------b--f-----j---- PhoD [P] COG3540 Phosphodiesterase/alkaline phosphatase D - 17 ---------dr-bcefg-snuj---- Ppk [P] COG0855 Polyphosphate kinase - 36 aom-kzyqvdrlbcefgh--ujx-t- MMT1 [P] COG0053 Predicted Co/Zn/Cd cation transporters - 21 -om-kzyqvdr---ef---nu---t- - [P] COG0428 Predicted divalent heavy-metal cations transporter - 28 ------y--dr-bc-f-----j---- TrkA [P] COG2072 Predicted flavoprotein involved in K+ transport - 15 ---------dr-b-efgh-n-j---- - [P] COG2837 Predicted iron-dependent peroxidase - 5 ------------b-e----n------ - [P] COG2822 Predicted periplasmic lipoprotein involved in iron transport - 7 --m-k---v----c--------x--- - [P] COG1563 Predicted subunit of the Multisubunit Na+/H+ antiporter - 11 ------y-------efgh-n--x--- CyaY [P] COG1965 Protein implicated in iron transport, frataxin homolog - 7 -----z-q-d--b-e------j---- PcoD [P] COG1276 Putative copper export protein - 3 --------------ef-----j---- HemS [P] COG3720 Putative heme degradation protein - 10 -------------c-fgh--uj---- HugZ [P] COG0748 Putative heme iron utilization protein - 3 --------------e-gh-------- HugX [P] COG3721 Putative heme iron utilization protein - 14 -o--------rlb-efg----j---- PhnD [P] COG3221 Putative phosphate/phosphonate-binding protein - 9 a------q-drlb------------- - [P] COG0490 Putative regulatory, ligand-binding protein related to C-terminal domains of K+ channels - 12 -------q-----cef----uj---- - [P] COG3696 Putative silver efflux pump - 93 aomp--yq-drlbcefghsnujx-t- PspE [P] COG0607 Rhodanese-related sulfurtransferases - 25 -om--zyq-dr-b-efg----j---- SseA [P] COG2897 Rhodanese-related sulfurtransferases - 8 ---------dr---efg--------- ViuB [P] COG2375 Siderophore-interacting protein - 34 ------yq--rlbcefgh--uj-i-- SUL1 [P] COG0659 Sulfate permease and related transporters (MFS superfamily) - 20 ------y-----bcefg-sn-j-i-- CysJ [P] COG0369 Sulfite reductase flavoprotein subunit - 24 a-----yq-dr-bcefg-sn-j---- CysI [P] COG0155 Sulfite reductase hemoprotein beta-component - 8 a-------------efgh-------- DsrC [P] COG2920 Sulfite reductase, gamma subunit - 45 -omp-zyq-drlbcefghsnujxit- SodA [P] COG0605 Superoxide dismutase - 12 ---------d----e------j---- TerB [P] COG3793 Tellurite resistance protein - 17 a-mpk-y---rl--e-gh-n------ TehA [P] COG1275 Tellurite resistance protein and related permeases - 36 aom-kzyqvd-lbcefgh-nu---tw TrkG [P] COG0168 Trk-type K+ transport systems, membrane components - 13 --m-----v-----efgh-------- DsrE [P] COG1553 Uncharacterized ACR involved in intracellular sulfur reduction - 7 --m-----v-----efg--------- DsrH [P] COG2168 Uncharacterized ACR involved in oxidation of intracellular sulfur - 3 -----------------h--u---t- Tpd [P] COG3470 Uncharacterized BCR, probably involved in high-affinity Fe2+ transport - 14 -----------l--efgh-nuj---- PhnA [P] COG2824 Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism - 6 --------------ef-----j---- - [P] COG3709 Uncharacterized component of phosphonate metabolism - 6 --------------ef-----j---- PhnG [P] COG3624 Uncharacterized enzyme of phosphonate metabolism - 6 --------------ef-----j---- PhnH [P] COG3625 Uncharacterized enzyme of phosphonate metabolism - 6 --------------ef-----j---- PhnI [P] COG3626 Uncharacterized enzyme of phosphonate metabolism - 6 --------------ef-----j---- PhnJ [P] COG3627 Uncharacterized enzyme of phosphonate metabolism - 3 ---------------fg----j---- IrpA [P] COG3487 Uncharacterized iron-regulated protein - 8 ---------d----efg-s--j---- ApaG [P] COG2967 Uncharacterized protein affecting Mg2+/Co2+ transport - 8 ------y-----b-e------j---- ChaC [P] COG3703 Uncharacterized protein involved in cation transport - 9 -----------l--e-ghs--j---- CutC [P] COG3142 Uncharacterized protein involved in copper resistance - 3 ---------------f--s--j---- PcoB [P] COG3667 Uncharacterized protein involved in copper resistance - 6 --------------efgh-------- NapD [P] COG3062 Uncharacterized protein involved in formation of periplasmic nitrate reductase - 4 ---------------fg--n------ NnrS [P] COG3213 Uncharacterized protein involved in response to NO - 9 --m-----v-----efgh-------- DsrF [P] COG2923 Uncharacterized protein involved in the oxidation of intracellular sulfur - 15 a-mpkz-qvd----e---s---xi-- CutA [P] COG1324 Uncharacterized protein involved in tolerance to divalent cations - 8 a-m-------rl---f---n------ - [T] COG3830 ACT domain-containing protein - 7 --------------efgh-------- ProQ [T] COG3109 Activator of osmoprotectant transporter ProP - 39 ------y---r--c-f-----j--t- CyaA [T] COG2114 Adenylate cyclase, family 3 (some proteins contain HAMP domain) - 39 --------vdr-bc-fg------it- SpoIIAA [T] COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) - 4 ----------------g----j---- ChrR [T] COG3806 Anti-sigma factor - 16 --------vdr-bc---------i-- RsbW [T] COG2172 Anti-sigma regulatory factor (Ser/Thr protein kinase) - 3 -------------c-f-----j---- - [T] COG3448 CBS-domain-containing membrane protein - 21 ----kz-q--rlb-efgh-nu----- CstA [T] COG1966 Carbon starvation protein, predicted membrane protein - 16 --------v---b-efghs-u---t- CsrA [T] COG1551 Carbon storage regulator (could also regulate swarming and quorum sensing) - 316 aom-k-y-vd-lbcefghs-uj--t- CheY [T] COG0784 CheY-like receiver domain - 9 --------vdrlb--------j---- DnrI [T] COG3629 DNA-binding transcriptional activator of the SARP family - 35 aom-kzyq-d--bc-fg--n-j---- AcuC [TQ] COG0123 Deacetylases, including yeast histone deacetylase and acetoin utilization protein - 65 aompkzy-vd-lbcefghsnuj---- ApaH [T] COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases - 31 -------q----b-efghsnujxit- DksA [T] COG1734 DnaK suppressor protein - 137 -------q-dr-bcefg-s--jx-t- Rtn [T] COG2200 EAL domain - 6 --------------efg----j---- - [T] COG3456 FHA-domain-containing protein - 27 ------y--dr-bc----s----i-- - [T] COG1716 FHA-domain-containing proteins - 72 aom----qvdr-bcefg----j---- FhlA [T] COG2203 GAF domain - 19 -o-p--y-v--lb-efghsn-j---- - [T] COG1956 GAF domain-containing protein - 221 -------qvdr-bcefg-s--j--t- - [T] COG2199 GGDEF domain - 20 ---------dr-b-e---sn------ MazF [T] COG2337 Growth inhibitor - 9 ---------d--b-e----n------ MazE [T] COG2336 Growth regulator - 39 -------qvdrlbcefghsnuj--tw SpoT [TK] COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases - 14 a------q-d--bc-fg----j---- ResE [T] COG2770 HAMP domain - 27 -------qvd--b--fg----j--t- - [T] COG2206 HD-GYP domain - 34 ------y------cefgh---j---- ArcB [T] COG2198 HPt domain - 16 ---------d-lb-e-gh-nu---t- LuxS [T] COG1854 LuxS protein involved in autoinducer AI2 synthesis - 4 --------------ef--s------- AmpE [T] COG3725 Membrane protein required for beta-lactamase induction - 10 aompkzy------------------- - [T] COG3642 Mn2+-dependent serine/threonine protein kinase - 6 --------------efgh-------- RseB [T] COG3026 Negative regulator of sigma E activity - 7 --------------efghs------- RseA [T] COG3073 Negative regulator of sigma E activity - 10 ---------dr--cefg---uj---- KdpD [T] COG2205 Osmosensitive K+ channel histidine kinase - 211 aom----qvdr-bcefg-s-uj-it- AtoS [T] COG2202 PAS/PAC domain - 11 a-----------bcefg--------- - [T] COG3438 Periplasmic ligand-binding sensor domain - 24 -----z-qvdrlbcefghsn-j---- PhoH [T] COG1702 Phosphate starvation-inducible protein PhoH, predicted ATPase - 18 a----z-q--r--cefghs-uj---- SixA [T] COG2062 Phosphohistidine phosphatase SixA - 4 -o----------bc------------ - [T] COG3848 Phosphohistidine swiveling domain - 8 --------v-----efgh-------- RseC [T] COG3086 Positive regulator of sigma E activity - 11 --------v-r-b--fg-s----i-- - [T] COG1875 Predicted ATPase related to phosphate starvation-inducible protein PhoH - 5 a-m-k--q------------------ - [T] COG2112 Predicted Ser/Thr protein kinase - 7 ------------bc-f-----j---- - [T] COG3300 Predicted integral membrane sensor domain - 7 -------------cef-----j---- - [T] COG3447 Predicted integral membrane sensor domain - 4 -------------c--g-s------- - [T] COG3292 Predicted periplasmic ligand-binding sensor domain - 5 a--------------fg----j---- - [T] COG3322 Predicted periplasmic ligand-binding sensor domain - 3 -------------c--g----j---- - [T] COG3452 Predicted periplasmic ligand-binding sensor domain - 5 ---------d---c-fg----j---- - [T] COG3614 Predicted periplasmic ligand-binding sensor domain - 15 --m-k-y--d----efg--------- CDC14 [T] COG2453 Predicted protein-tyrosine phosphatase - 7 ----------rlb------------- SdrC [T] COG3480 Predicted secreted protein containing a PDZ domain - 12 aompkzy--d-----f---------- RIO1 [T] COG1718 Predicted serine/threonine protein kinases - 9 --------v------fg---u---t- - [T] COG1639 Predicted signal transduction protein - 6 -------q----b---g--------- - [T] COG3434 Predicted signal transduction protein containing EAL and modified HD-GYP domains - 20 -----------lb--fg-s------- - [T] COG2972 Predicted signal transduction protein with a C-terminal ATPase domain - 7 a------q----b--fg--------- - [T] COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains - 33 ---p--yq-drlbc-f--s-uj-i-w PTC1 [T] COG0631 Protein serine/threonine phosphatases - 10 ------y--drl---f-----j---- - [T] COG2365 Protein tyrosine/serine phosphatase - 41 aom---yq-drlbcefghsnuj---- Wzb [T] COG0394 Protein-tyrosine-phosphatase - 9 -o----------b-efg----j---- PrkA [T] COG2766 Putative Ser protein kinase - 6 ------------b-e-g--------- LytS [T] COG3275 Putative regulator of cell autolysis - 7 aom-kzy------------------- - [T] COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain - 46 aompkzyqv----c-------j---- RAD55 [T] COG0467 RecA-superfamily ATPases implicated in signal transduction - 21 ---------drlb--f---------- CdaR [TQ] COG2508 Regulator of polyketide synthase expression - 57 -------q----b-efghsnujxit- AtoC [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains - 14 --------v---bc-fg---ujx-t- PleD [T] COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain - 122 ---------drlbcefghsn-j---- CitB [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - 6 ----------r----f-----j---- AmiR [T] COG3707 Response regulator with putative antiterminator output domain - 218 -------qvdrlbcefghsnujxi-- OmpR [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - 6 --------------efgh-------- - [T] COG3103 SH3 domain protein - 13 -----------lb-----sn-j--tw HprK [T] COG1493 Serine kinase of the HPr protein, regulates carbohydrate metabolism - 21 --------v-r-bc-fg----j-it- RsbU [TK] COG2208 Serine phosphatase RsbU, regulator of sigma subunit - 188 -o-p-zyq-drlbcefghs--j-i-w SPS1 [T] COG0515 Serine/threonine protein kinases - 518 aom---yqvdrlbcefghsnujxit- BaeS [T] COG0642 Signal transduction histidine kinase - 13 -----------lb-e-g--------- CitA [T] COG3290 Signal transduction histidine kinase regulating citrate/malate metabolism - 5 --------------e-gh-------- UhpB [T] COG3851 Signal transduction histidine kinase, glucose-6-phosphate specific - 10 --------------efgh-n------ NarQ [T] COG3850 Signal transduction histidine kinase, nitrate/nitrite-specific - 7 --------------efg-s--j---- NtrB [T] COG3852 Signal transduction histidine kinase, nitrogen specific - 6 --------------efg----j---- PtsP [T] COG3605 Signal transduction protein containing GAF and PtsI domains - 31 -o----y------cefghsn-jx--- BolA [T] COG0271 Stress-induced morphogen (activity unknown) - 17 --------v---bcefg--------- PspF [TK] COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain - 3 a----------lb------------- - [T] COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) - 5 --------------efgh-------- AhpA [T] COG3726 Uncharacterized membrane protein affecting hemolysin expression - 21 ---------d--bce----------- TerZ [T] COG2310 Uncharacterized proteins involved in stress response, homologs of TerZ and putative cAMP-binding protein CABP1 - 116 aompkzyq-drlbcefgh-n-jx--- UspA [T] COG0589 Universal stress protein UspA and related nucleotide-binding proteins - 86 ------yqvdrlbcefghsnuj-it- Crp [T] COG0664 cAMP-binding domains - Catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases - 8 a-m-k---v-----e----------- - [C] COG1151 6Fe-6S prismane cluster-containing protein - 20 aom-kz--vd-lb-----s--j---- NatB [C] COG1668 ABC-type Na+ efflux pump, permease component - 15 ----------------g-sn--xi-- - [C] COG3202 ATP/ADP translocase - 33 --------vdrlbcefgh-nujx-tw ackA [C] COG0282 Acetate kinase - 10 ao----y------cef-----j---- ACH1 [C] COG0427 Acetyl-CoA hydrolase - 26 -o-p-zyq-drlb-efg-sn-jx--- AcnA [C] COG1048 Aconitase A - 12 -------------cefghsnu----- AcnB [C] COG1049 Aconitase B - 32 aompk---------efg--n-j---- - [C] COG1042 Acyl-CoA synthetase (NDP forming) - 25 a-mpkz--vd-lb-efgh---j--t- AcyP [C] COG1254 Acylphosphatases - 34 -----z-q-dr-b-ef-----j--t- CoxL [C] COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs - 24 -----z---dr-b-ef-----j--t- CoxM [C] COG1319 Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs - 30 -----z---dr-b-ef-----j--t- CoxS [C] COG2080 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs - 35 aompkzyqv--lb-efgh---j---- EutG [C] COG1454 Alcohol dehydrogenase IV - 24 a-mpkz--------e----------- - [C] COG2414 Aldehyde:ferredoxin oxidoreductase - 94 aompkz-q-dr-bcefgh--uj---- BisC [C] COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing - 5 a-m----------------------- - [C] COG1036 Archaeal flavoproteins - 22 aompkzy--d-l-----------it- NtpA [C] COG1155 Archaeal/vacuolar-type H+-ATPase subunit A - 17 aompkzy--d-l-----------it- NtpB [C] COG1156 Archaeal/vacuolar-type H+-ATPase subunit B - 11 aompk-y--d-l-------------- NtpC [C] COG1527 Archaeal/vacuolar-type H+-ATPase subunit C - 17 aompkzy--d-l-----------it- NtpD [C] COG1394 Archaeal/vacuolar-type H+-ATPase subunit D - 15 aompkzy--d-------------it- NtpE [C] COG1390 Archaeal/vacuolar-type H+-ATPase subunit E - 11 aompk-y--d--------------t- NtpG [C] COG1436 Archaeal/vacuolar-type H+-ATPase subunit F - 9 aompk----d---------------- NtpF [C] COG2811 Archaeal/vacuolar-type H+-ATPase subunit H - 18 aompkzy--d-l-----------it- NtpI [C] COG1269 Archaeal/vacuolar-type H+-ATPase subunit I - 4 ---------------f--sn------ - [C] COG3241 Azurin - 4 --------vd--b------------- - [C] COG3426 Butyrate kinase - 10 --------------e-gh-------- DcuC [C] COG3069 C4-dicarboxylate transporter - 5 a-m----------------------- CdhA [C] COG1152 CO dehydrogenase/acetyl-CoA synthase alpha subunit - 4 a-m----------------------- CdhC [C] COG1614 CO dehydrogenase/acetyl-CoA synthase beta subunit - 3 a-m----------------------- CdhD [C] COG2069 CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) - 4 a-m----------------------- CdhB [C] COG1880 CO dehydrogenase/acetyl-CoA synthase epsilon subunit - 3 a-m----------------------- CdhE [C] COG1456 CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein) - 11 ---------------fg--nuj---- CcoO [C] COG2993 Cbb3-type cytochrome oxidase, cytochrome c subunit - 13 ---------------fg--nuj---- CcoN [C] COG3278 Cbb3-type cytochrome oxidase, subunit 1 - 6 -----------l--e-gh-------- CitC [C] COG3053 Citrate lyase synthetase - 6 -----------l--e-gh-------- CitF [C] COG3051 Citrate lyase, alpha subunit - 6 -----------l--e-gh-------- CitD [C] COG3052 Citrate lyase, gamma subunit - 50 aomp-zyqvdrlbcefghsnujx--- GltA [C] COG0372 Citrate synthase - 82 aom------drlb-ef--s--j---- - [C] COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases - 9 a-m-k--------c------------ - [C] COG3259 Coenzyme F420-reducing hydrogenase, alpha subunit - 12 a-m----------c------------ - [C] COG1035 Coenzyme F420-reducing hydrogenase, beta subunit - 6 a-m----------------------- FlpD [C] COG1908 Coenzyme F420-reducing hydrogenase, delta subunit - 10 a-m-k--------c------------ - [C] COG1941 Coenzyme F420-reducing hydrogenase, gamma subunit - 20 -------------cefghsn-j---- CybB [C] COG3038 Cytochrome B561 - 5 ----------------g--n-j---- - [C] COG3658 Cytochrome b - 12 a------q------efgh--u----- FdnI [C] COG2864 Cytochrome b subunit of formate dehydrogenase - 30 -o-p-zyq-dr-bc-fg-snujx--- QcrB [C] COG1290 Cytochrome b subunit of the bc complex - 34 ao-p---q--rlbcefgh--ujxi-- CydA [C] COG1271 Cytochrome bd-type quinol oxidase, subunit 1 - 28 -o-----q--rlbcefgh--ujxi-- AppB [C] COG1294 Cytochrome bd-type quinol oxidase, subunit 2 - 5 -------------c-f----u----- - [C] COG3258 Cytochrome c - 43 ---------dr-bc-fg--nuj---- CccA [C] COG2010 Cytochrome c, mono- and diheme variants - 16 ------yq----b--fg-snujx--- CYT1 [C] COG2857 Cytochrome c1 - 10 ------y--------------jx--- - [C] COG3474 Cytochrome c2 - 8 ---------------fg--n-j---- CycB [C] COG3245 Cytochrome c5 - 13 ---------d-----fgh-nu----- - [C] COG2863 Cytochrome c553 - 5 ------y--------f-----jx--- COX11 [C] COG3175 Cytochrome oxidase assembly factor - 54 aompkzyqv-r--cef--sn-j---- FixC [C] COG0644 Dehydrogenases (flavoproteins) - 8 a-m-k---v---------------t- - [C] COG2033 Desulfoferrodoxin - 74 -o-p-zy--drlbcefghsn-jxi-w AceF [C] COG0508 Dihydrolipoamide acyltransferases - 88 aomp-zyqvdrlbcefghsn-jxi-w Lpd [C] COG1249 Dihydrolipoamide dehydrogenase/glutathione oxidoreductase and related enzymes - 31 ao-p-zy-vdr-b-ef--sn-j---- FixB [C] COG2025 Electron transfer flavoprotein alpha-subunit - 30 ao-p-zy-vdr-b-ef--sn-j---- FixA [C] COG2086 Electron transfer flavoprotein beta-subunit - 8 --------------efgh-n------ AtpI [C] COG3312 F0F1-type ATP synthase I subunit - 29 ------yqv-rlbcefghsnujx--w AtpB [C] COG0356 F0F1-type ATP synthase a subunit - 30 ------yqv-rlbcefghsnujx--w AtpA [C] COG0056 F0F1-type ATP synthase alpha subunit - 38 -------qv-rlbcefghsnujx--w AtpF [C] COG0711 F0F1-type ATP synthase b subunit - 30 ------yqv-rlbcefghsnujx--w AtpD [C] COG0055 F0F1-type ATP synthase beta subunit - 48 aompkzyqvdrlbcefghsnujxitw AtpE [C] COG0636 F0F1-type ATP synthase c subunit/Archaeal/vacuolar-type H+-ATPase subunit K - 30 ------yqv-rlbcefghsnujx--w AtpH [C] COG0712 F0F1-type ATP synthase delta subunit (mitochondrial oligomycin sensitivity protein) - 29 ------yqv-rlbcefghsnujx--w AtpC [C] COG0355 F0F1-type ATP synthase epsilon subunit (mitochondrial delta subunit) - 30 ------yqv-rlbcefghsnujx--w AtpG [C] COG0224 F0F1-type ATP synthase gamma subunit - 95 ao-p-zyq-dr-bcefghsnuj---- GlcD [C] COG0277 FAD/FMN-containing dehydrogenases - 77 aomp-z-q-drlbcefgh-nuj---- GlpC [C] COG0247 Fe-S oxidoreductases - 10 --------------efghsn------ - [CO] COG2924 Fe-S cluster protector protein - 6 --m-k----d---c------------ - [C] COG1625 Fe-S oxidoreductase, related to NifB/MoaA family - 20 aompkzy-v----c------u----- - [C] COG0731 Fe-S oxidoreductases - 54 a-mpkz--vdrlbcefg----j---- - [C] COG1032 Fe-S oxidoreductases family 2 - 38 ao--kz-q------efgh--uj---- HybA [C] COG0437 Fe-S-cluster-containing hydrogenase components 1 - 30 a-m-k---v----ce----------- HycB [C] COG1142 Fe-S-cluster-containing hydrogenase components 2 - 50 ao----yq-dr--cefgh-n-jxi-- Fdx [C] COG0633 Ferredoxin - 6 -o-----qvd--bc------------ - [C] COG3411 Ferredoxin - 16 aom-kz--v-rlbc------------ Fer [C] COG1141 Ferredoxin 1 - 97 a-mpkz--vd--bcefghsnuj---- NapF [C] COG1145 Ferredoxin 2 - 59 aompk---vdr--cefg-s-ujx--- - [C] COG1146 Ferredoxin 3 - 11 ---p-z--v-----e------j---- FixX [C] COG2440 Ferredoxin-like protein - 42 -o----y--dr-b-efg-sn-j---- Hmp [C] COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 - 38 a-m---y----lbcefghs-uj--t- FldA [C] COG0716 Flavodoxins - 39 aompkz--vdr-bcefg-----x--- HyfB [CP] COG0651 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit - 16 --mpk---v-r---e----------- HyfC [C] COG0650 Formate hydrogenlyase subunit 4 - 35 aompkz-qvdr--cef--snujx--- NuoI [C] COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) - 3 a-m----------------------- FwdA [C] COG1229 Formylmethanofuran dehydrogenase subunit A - 5 a-m----------------------- FwdB [C] COG1029 Formylmethanofuran dehydrogenase subunit B - 6 a-m----------------------- FwdC [C] COG2218 Formylmethanofuran dehydrogenase subunit C - 4 a-m----------------------- FwdD [C] COG1153 Formylmethanofuran dehydrogenase subunit D - 9 a-mpk----d---------------- - [C] COG2191 Formylmethanofuran dehydrogenase subunit E - 5 a-m----------------------- Ftr [C] COG2037 Formylmethanofuran:tetrahydromethanopterin formyltransferase - 27 -o---zy--dr-bcefghsnujxi-- FumC [C] COG0114 Fumarase - 6 ----------r---e-gh-------- FrdC [C] COG3029 Fumarate reductase subunit C - 6 ----------r---e-gh-------- FrdD [C] COG3080 Fumarate reductase subunit D - 12 a---k-y-v-r---e-gh-------- GalT [C] COG1085 Galactose-1-phosphate uridylyltransferase - 35 a-m---yqvdrlbcefghsnujxitw GpsA [C] COG0240 Glycerol 3-phosphate dehydrogenase - 21 aompkz--v--lbce----------- GldA [C] COG0371 Glycerol dehydrogenase and related enzymes - 32 ao-pkzyqvdrlbcefghs--j--tw GlpK [C] COG0554 Glycerol kinase - 29 -o-p--y--drlbcefghs--j--t- GlpA [C] COG0578 Glycerol-3-phosphate dehydrogenase - 48 -o-pkzy-vdrlb-efgh---j--tw UgpQ [C] COG0584 Glycerophosphoryl diester phosphodiesterase - 10 -----------lb--f--snu----- CitM [C] COG2851 H+/citrate symporter - 28 -o---zyq-dr-bcef--s--jx--- CyoC [C] COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3 - 10 ------------b-ef--s--j---- CyoD [C] COG3125 Heme/copper-type cytochrome/quinol oxidase, subunit 4 - 30 -o---zyq-dr-bcef--s--jx--- CyoB [C] COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1 - 33 ao---zyq-dr-bcef--s--jx--- CyoA [C] COG1622 Heme/copper-type cytochrome/quinol oxidases, subunit 2 - 11 ------yq-d--b-efg-s-u----- Hmp [C] COG1017 Hemoglobin-like flavoprotein - 8 a-m----qv----------------- HdrA [C] COG1148 Heterodisulfide reductase, subunit A and related polyferredoxins - 8 a-m----q-----c------u----- HdrB [C] COG2048 Heterodisulfide reductase, subunit B - 6 a-m----q------------------ HdrC [C] COG1150 Heterodisulfide reductase, subunit C - 38 -ompkzyq-dr-bcefghsnujxi-w Ppa [C] COG0221 Inorganic pyrophosphatase - 3 --------v------------j---- OVP1 [C] COG3808 Inorganic pyrophosphatase - 10 a-m---y-vd-lb---g--------- PPX1 [C] COG1227 Inorganic pyrophosphatase/exopolyphosphatase - 24 ao-p-zyqvdrlbcef-h--uj---- Icd [C] COG0538 Isocitrate dehydrogenases - 14 ------y--dr-b-efg----j---- AceA [C] COG2224 Isocitrate lyase - 43 aompkzy--drlbcefgh-n-jx-t- LldD [C] COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases - 25 ao-------d--b-efgh-nu---t- LldP [C] COG1620 L-lactate permease - 45 ---pkzyq---lbcefgh-nuj--t- LdhA [CHR] COG1052 Lactate dehydrogenase and related dehydrogenases - 15 ------y--dr-b-efg----j---- AceB [C] COG2225 Malate synthase - 16 --m-k-------b-ef-h---j---- - [C] COG2055 Malate/L-lactate dehydrogenases - 42 aomp-zyqvdrlbce-ghs-ujxitw Mdh [C] COG0039 Malate/lactate dehydrogenases - 41 ao-pkzy-vdrlbcefghsnujx--- SfcA [C] COG0281 Malic enzyme - 12 a-m-k---v----------------- - [C] COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain - 8 ----------r----fg-snu----- Icd [C] COG2838 Monomeric isocitrate dehydrogenase - 3 a-m----------------------- Mth [C] COG1927 N5,N10-methylenetetrahydromethanopterin dehydrogenase - 12 -------q--r-b-ef-----j---- NirB [C] COG1251 NAD(P)H-nitrite reductase - 192 -omp-zyq-drlbcefgh-nuj---w PutA [C] COG1012 NAD-dependent aldehyde dehydrogenases - 20 ----------r--cefgh-n-jx--- PntA [C] COG3288 NAD/NADP transhydrogenase alpha subunit - 14 ----------r--cefgh-n-jx--- PntB [C] COG1282 NAD/NADP transhydrogenase beta subunit - 26 -o----y--drlbcefgh---j---- Ndh [C] COG1252 NADH dehydrogenase, FAD-containing subunit - 19 -------qvdr--cef--snujx--- NuoG [C] COG1034 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) - 44 ao-p--y-vdrlb-efg-s--j---- NemA [C] COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family - 3 ---------------------jx--- - [C] COG3761 NADH:ubiquinone oxidoreductase 17.2 kD subunit - 25 ao-pkz-qvdr--cef--snujx--- NuoB [C] COG0377 NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases - 20 --m----qvdr--cef--sn-jx--- NuoE [C] COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit - 26 ao-pkz-qvdr--cef--snujx--- NuoC [C] COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit - 26 ao-pkz-qvdr--cef--snujx--- NuoD [C] COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit 7 - 24 ao-p-z-q-dr--cef--snujx--- NuoH [C] COG1005 NADH:ubiquinone oxidoreductase subunit 1 (chain H) - 22 -o-p-z-q-dr--cef--snujx--- NuoK [C] COG0713 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) - 23 ao-p-z-q-dr--cef--snujx--- NuoN [C] COG1007 NADH:ubiquinone oxidoreductase subunit 2 (chain N) - 22 -o-p---q-dr--cef--snujx--- NuoA [C] COG0838 NADH:ubiquinone oxidoreductase subunit 3 (chain A) - 24 -o-p---q-dr--cef--snujx--- NuoM [C] COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M) - 38 ao-pkz-q-dr-bcefg-snujx--- NuoL [CP] COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit - 26 ao-p-z-q-dr--cef--snujx--- NuoJ [C] COG0839 NADH:ubiquinone oxidoreductase subunit 6 (chain J) - 19 --m----qvdr--cef--sn-jx--- NuoF [C] COG1894 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit - 71 -o-p-zyq-drlb-efghs--j---- Qor [CR] COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases - 18 --------v-----efgh-n---it- NqrA [C] COG1726 Na+-transporting NADH:ubiquinone oxidoreductase alpha subunit - 8 ---------------fgh-n---i-- NqrF [C] COG2871 Na+-transporting NADH:ubiquinone oxidoreductase beta subunit - 16 --------v-----efgh-n---i-- NqrC [C] COG2869 Na+-transporting NADH:ubiquinone oxidoreductase gamma subunit - 19 --------v----cefgh-n-j-it- NqrB [C] COG1805 Na+-transporting NADH:ubiquinone oxidoreductase subunit 2 - 16 --------v-----efgh-n---i-- NqrD [C] COG1347 Na+-transporting NADH:ubiquinone oxidoreductase subunit 4 - 16 --------v-----efgh-n---i-- NqrE [C] COG2209 Na+-transporting NADH:ubiquinone oxidoreductase subunit 5 - 10 a---k---v--l----gh------t- OadB [C] COG1883 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit - 7 a---k-----------gh------t- OadG [C] COG3630 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, gamma subunit - 7 --------v--l----gh------t- OadA [C] COG3632 Na+-transporting oxaloacetate decarboxylase, alpha subunit - 28 -o--kz------b---gh-nu---t- NhaC [C] COG1757 Na+/H+ antiporter - 40 -o--kz-q-dr-b-efg-s-ujxit- GltP [C] COG1301 Na+/H+-dicarboxylate symporters - 6 -----------lb---g--------- CitS [C] COG3493 Na+/citrate symporter - 6 -------q------e-----u----- HyaC [C] COG1969 Ni,Fe-hydrogenase I cytochrome b subunit - 12 a-m----q------e-----u----- HyaB [C] COG0374 Ni,Fe-hydrogenase I large subunit - 13 a------q------e-----u---t- HyaA [C] COG1740 Ni,Fe-hydrogenase I small subunit - 8 ----k-----r---e----------- HycE [C] COG3262 Ni,Fe-hydrogenase III component G - 13 --mpk-----r---e----------- HycE [C] COG3261 Ni,Fe-hydrogenase III large subunit - 13 --mpk-----r---e----------- - [C] COG3260 Ni,Fe-hydrogenase III small subunit - 22 a-m-k--q-----ce-----u----- HyaD [C] COG0680 Ni,Fe-hydrogenase maturation factor - 36 ao----yqv-rlb-efgh-nujxitw IscU [C] COG0822 NifU homologs involved in Fe-S cluster formation - 7 --------------efgh--u----- NapB [C] COG3043 Nitrate reductase cytochrome c-type subunit - 10 a----z----r-b-ef---------- NarJ [C] COG2180 Nitrate reductase delta subunit - 11 a---------r-b-ef---------- NarI [C] COG2181 Nitrate reductase gamma subunit - 16 --------------efgh--u----- TorC [C] COG3005 Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit - 12 --m----------c-------j---- NifD [C] COG2710 Nitrogenase molybdenum-iron protein, alpha and beta chains - 89 aompkz-qvdrlbcefghsnuj---- NfnB [C] COG0778 Nitroreductase - 5 a-m----------------------- - [C] COG2221 Oxidoreductase related to nitrite reductase - 13 -----zy--d--b-efgh--uj---- PckA [C] COG1866 Phosphoenolpyruvate carboxykinase (ATP) - 9 ---pk-----r------------it- PckA [C] COG1274 Phosphoenolpyruvate carboxykinase (GTP) - 13 ---------drl-cefgh-n-j---- Ppc [C] COG2352 Phosphoenolpyruvate carboxylase - 40 -o------vdrlbcefghsnujx-tw Pta [C] COG0280 Phosphotransacetylase - 23 -om---y-----bcef-----j-it- - [C] COG1413 Phycocyanin alpha-subunit phycocyanobilin lyase and related proteins - 11 -o-----------c-------j---- PetE [C] COG3794 Plastocyanin - 25 a-mp---------cefgh-nuj---- NapH [C] COG0348 Polyferredoxin - 6 ----kz--v---b--------j---- - [C] COG2421 Predicted acetamidase/formamidase - 32 a--p-----dr---ef-----j---- CaiB [C] COG1804 Predicted acyl-CoA transferases/carnitine dehydratase - 11 --------v-----efghsn------ - [C] COG2878 Predicted alternative beta subunit of Na+-transporting NADH:ubiquinone oxidoreductase - 4 a---kz-------------------- - [C] COG2441 Predicted butyrate kinase - 84 -o-p-zyqvdrlbcefg-s-uj--t- Tas [C] COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) - 3 ---------------fg----j---- - [C] COG3488 Predicted thiol oxidoreductase - 23 ------y--dr-b-efghsn-jxi-- SucA [C] COG0567 Pyruvate and 2-oxoglutarate dehydrogenases, E1 component - 15 a-m-k-yq--rlb--f----uj---- PycA [C] COG1038 Pyruvate carboxylase, C-terminal domain/subunit - 15 ---------dr---efghsn-j---- AceE [C] COG2609 Pyruvate dehydrogenase, decarboxylase component - 16 a-m--------l--e-gh-------- PflD [C] COG1882 Pyruvate-formate lyase - 61 aompkzyqv-rlbce-g---uj--t- PorA [C] COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit - 59 aompkzyqv-rlbce-g---uj--t- PorB [C] COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit - 15 a-mpk--qv-----------u----- - [C] COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit - 55 aompkz-qv-rlbce-g---uj--t- PorG [C] COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit - 7 ------y-----b-e------j---- AraB [C] COG1069 Ribulose kinase - 34 -o-p-zyq-dr-bc-fg-snujx--- QcrA [C] COG0723 Rieske Fe-S protein - 21 a-m-k---v-r--cef--sn-j--t- - [C] COG1773 Rubredoxin - 14 a-m-k---v---b-------u----- - [C] COG1592 Rubrerythrin - 4 --------------e-gh-------- CybC [C] COG3783 Soluble cytochrome b562 - 18 a--p-z---dr---efg-sn-jxi-- SdhD [C] COG2142 Succinate dehydrogenase hydrophobic anchor subunit - 40 aomp-zyq-dr-bcefghsnujxi-- FrdB [C] COG0479 Succinate dehydrogenase/fumarate reductase Fe-S protein - 27 ao-p-zy--dr-b-efg-snujxi-- SdhC [C] COG2009 Succinate dehydrogenase/fumarate reductase cytochrome b subunit - 50 aomp-zyqvdrlbcefghsnujxi-- SdhA [C] COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunits - 37 aomp-zyq-dr-bcefghsnujxi-- SucD [C] COG0074 Succinyl-CoA synthetase alpha subunit - 33 aomp-zyq-dr-bcefghsnujxi-- SucC [C] COG0045 Succinyl-CoA synthetase beta subunit - 22 a-m-k--qv---b-efg-sn-j---- TtdA [C] COG1951 Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain - 23 a-m-k--qv---b-efg-sn-j---- FumA [C] COG1838 Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain - 34 -o-p-zy--drlbc-f-----jxi-w AcoA [C] COG1071 Thiamine pyrophosphate-dependent dehydrogenases, E1 component alpha subunit - 32 -o-p-zy--drlbc-f-----jxi-w AcoB [C] COG0022 Thiamine pyrophosphate-dependent dehydrogenases, E1 component beta subunit - 7 aom-kz--v----------------- - [C] COG1031 Uncharacterized Fe-S oxidoreductases - 13 a-m------d-lbcefg----j---- - [C] COG1600 Uncharacterized Fe-S protein - 19 aomp-z---d-lb-e--h-nu----- - [C] COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain - 22 a-m-k--qv----cef---------- - [C] COG0426 Uncharacterized flavoproteins - 8 --------v---b-e-gh-------- - [C] COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family - 17 a-mp------r-b-efgh--uj---- FdhD [C] COG1526 Uncharacterized protein required for formate dehydrogenase activity - 18 ------y---r-bcef-h-n-j---- AdhC [C] COG1062 Zn-dependent alcohol dehydrogenases, class III - 18 ------yq-dr-bcefgh---j-i-- GlgB [G] COG0296 1,4-alpha-glucan branching enzyme - 9 ---------d----ef-h---j---- HpcH [G] COG3836 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase - 8 --mpk----d---------------- - [G] COG2074 2-Phosphoglycerate kinase - 24 --------v--lbcefghsnuj--t- Eda [G] COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase - 3 --------------e------j---- DgoK [G] COG3734 2-keto-3-deoxy-galactonokinase - 6 -----------lb-ef---------- - [G] COG2706 3-carboxymuconate cyclase - 17 a-m-kz-----lb-e-gh-------w SgbH [G] COG0269 3-hexulose-6-phosphate synthase and related proteins - 42 aompkzyqvdrlbcefghsnuj-itw Pgk [G] COG0126 3-phosphoglycerate kinase - 16 -------q-drl-cefgh-----it- MalQ [G] COG1640 4-alpha-glucanotransferase - 5 ------------b-e------j---- KduI [G] COG3717 5-keto 4-deoxyuronate isomerase - 33 ------yqvdrlbce-ghs--j-itw PfkA [G] COG0205 6-phosphofructokinase - 22 ------y-v-rlbce-gh-n-j-it- Gnd [G] COG0362 6-phosphogluconate dehydrogenase, family 1 - 8 -o-----q-drlb--------j---- Gnd [G] COG1023 6-phosphogluconate dehydrogenase, family 2 - 38 ------y-v-rlbcefghsnuj-it- NagB [G] COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase - 14 ---p----vd-lb-e-g--------- MalG [G] COG3833 ABC-type maltose transport systems, permease component - 14 ---pk---vd-lb-e-g--------- MalF [G] COG3834 ABC-type maltose transport systems, permease component - 25 a------q--rlbc-fghsnujx--- TagH [G] COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component - 73 -----z--v--lb-efgh---j--t- MglA [G] COG1129 ABC-type sugar (aldose) transport system, ATPase component - 96 -o-pkz--vdrlbcefghs--j--tw UgpA [G] COG1175 ABC-type sugar transport systems, permease components - 22 --------vdrlbce-gh---j-i-- GlgC [G] COG0448 ADP-glucose pyrophosphorylase - 7 --------v---b--------j---- AbfA [G] COG3534 Alpha-L-arabinofuranosidase - 4 --------v---------s--j---- - [G] COG3669 Alpha-L-fucosidase - 10 --mpk--q-----c----------t- - [G] COG1449 Alpha-amylase/alpha-mannosidase - 3 --------v---b---g--------- GalA [G] COG3345 Alpha-galactosidase - 21 --------v---b-e-g----j---- CelF [G] COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases - 13 ---p--y-v--lb-e------j---- - [G] COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases - 3 --------v---b--------j---- AguA [G] COG3661 Alpha-glucuronidase - 13 ---pk-y-v-rlbce----------- AMS1 [G] COG0383 Alpha-mannosidase - 13 ---p--------b-e-----uj---- UxaA [G] COG2721 Altronate dehydratase - 42 ----------rlb-ef-hs-uj---- AraJ [G] COG2814 Arabinose efflux permease - 48 aom-kzyqvdrlbcefghsnujx-t- SuhB [G] COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family - 5 --------v---b--------j---- XynA [G] COG3693 Beta-1,4-xylanase - 10 ------y-v--lb-e-gh-------- SacC [G] COG1621 Beta-fructosidases (levanase/invertase) - 11 ----k---v---b-----s--j---- LacA [G] COG1874 Beta-galactosidase - 13 --------v--lb-e---s------- LacZ [G] COG3250 Beta-galactosidase/beta-glucuronidase - 13 ------y-v-r-b--------j---- SKN1 [G] COG2273 Beta-glucanase/Beta-glucan synthetase - 38 --------vdrlbcefghsn-jx-t- BglX [G] COG1472 Beta-glucosidase-related glycosidases - 31 ---pk------lb-e-g----j---- BglB [G] COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase - 9 -----------lb-e------j---- XynB [G] COG3507 Beta-xylosidase - 3 ------------b--f-----j---- XynB [G] COG3664 Beta-xylosidase - 4 --------v-------g----j---- - [G] COG3459 Cellobiose phosphorylase - 33 aom-kz--vd-lb-ef---------w FrvX [G] COG1363 Cellulase M and related proteins - 7 -o----y-----b---g--------- ChiA [G] COG3325 Chitinase - 3 -----------l---fg--------- - [G] COG3469 Chitinase - 22 -o---z---drl--efgh---j---- CitE [G] COG2301 Citrate lyase beta subunit - 11 ---p----v--lb-e--h---j---- UxuA [G] COG1312 D-mannonate dehydratase - 19 aom-kz-q------e--h---j-i-- FbaB [G] COG1830 DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes - 29 --------v---bcefgh---j---- DctP [G] COG1638 Dicarboxylate-binding periplasmic protein - 21 ------y--d-lb-e--h---j---- DAK1 [G] COG2376 Dihydroxyacetone kinase - 13 ----k-y-v---b-----s------- BglC [G] COG2730 Endoglucanase - 4 -------q----b-e----------- CelA [G] COG3405 Endoglucanase Y - 50 aompkzyqvdrlbcefghsnuj-itw Eno [G] COG0148 Enolase - 5 -------------ce-gh-------- - [G] COG3001 Fructosamine-3-kinase - 15 -o----y------cefgh-nuj---- Fbp [G] COG0158 Fructose-1,6-bisphosphatase - 16 ---------dr-bce-gh---j---- GlpX [G] COG1494 Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins - 3 -------------c----s--j---- - [G] COG3588 Fructose-1,6-bisphosphate aldolase - 19 --------vdrlb-efgh------tw FruK [G] COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) - 67 ---p--yqvdrlbcefghs--j---- GpmB [G] COG0406 Fructose-2,6-bisphosphatase - 41 ------yqvdrlbcefgh-nuj--tw Fba [G] COG0191 Fructose/tagatose bisphosphate aldolase - 5 ------------b-----s--j---- NolL [G] COG3594 Fucose 4-O-acetylase and related acetyltransferases - 14 ------y-----b-e--hsnuj---- FucP [G] COG0738 Fucose permease - 14 ----k-y-v-rlb-e-gh------t- GalK [G] COG0153 Galactokinase - 28 ---p--y-vd-lb-e-gh-n-j---- GalM [G] COG2017 Galactose mutarotase and related enzymes - 24 --m-k-yq-drlbcefgh---j-i-- GlgP [G] COG0058 Glucan phosphorylase - 13 -------------cef--snuj---- Glk [G] COG0837 Glucokinase - 19 ---p--y--d--b--f-hs--j---- - [G] COG3386 Gluconolactonase - 29 ------yqvdrlbcefghsnuj-it- Zwf [G] COG0364 Glucose-6-phosphate 1-dehydrogenase - 40 -omp-zyqvdrlbcefghsnuj-itw Pgi [G] COG0166 Glucose-6-phosphate isomerase - 16 ---------dr-bcef--s--j--t- - [G] COG2133 Glucose/sorbosone dehydrogenases - 8 --------v--lb-e------j---- UxaC [G] COG1904 Glucuronate isomerase - 60 aompkzyqvdrlbcefghsnuj-itw GapA [G] COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase - 16 ----------rlbcefgh-n------ - [G] COG1929 Glycerate kinase - 35 a-m---y-vd-lbcef-hs--j--tw GlpF [G] COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) - 13 ---pk-y--d--b--------j---- GDB1 [G] COG3408 Glycogen debranching enzyme - 20 --m-k--qvd-lbcefgh---j-i-- GlgA [G] COG0297 Glycogen synthase - 71 ---p--y-vdrlbcefg----j---- AmyA [G] COG0366 Glycosidases - 26 --m---y--dr-bcefg----j---- - [GC] COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase - 29 -----------lb-efgh-n------ GntT [GE] COG2610 H+/gluconate symporter and related permeases - 10 --------------ef-h---j---- Hfi [G] COG3622 Hydroxypyruvate isomerase - 5 --------v---b-e----------- AraA [G] COG2160 L-arabinose isomerase - 8 ----kz--v-----e--h-------- FucI [G] COG2407 L-fucose isomerase and related proteins - 3 ---------dr----f---------- TreY [G] COG3280 Maltooligosyl trehalose synthase - 19 ---pkz--vd-lb-e-g--------- MalE [G] COG2182 Maltose-binding periplasmic proteins/domains - 28 ------y-v--lb-efgh---j---w MtlD [G] COG0246 Mannitol-1-phosphate/altronate dehydrogenases - 38 a-m-k--qv-r-bcefg-snuj---- CpsB [G] COG0662 Mannose-6-phosphate isomerase - 10 --------v---bce-gh------t- MgsA [G] COG1803 Methylglyoxal synthase - 5 -----------l----g-s--j---- Chb [G] COG3525 N-acetyl-beta-hexosaminidase - 21 --------vdrlb-efghs--j--t- NagA [G] COG1820 N-acetylglucosamine-6-phosphate deacetylase - 6 -------------ce---s--j---- - [G] COG2942 N-acyl-D-glucosamine 2-epimerase - 21 -----------lbce------j---- MelB [G] COG2211 Na+/melibiose symporter and related transporters - 9 ------y-------ef--------t- TreA [G] COG1626 Neutral trehalase - 20 ---p-z----r-b-efg-sn-j---- PrpB [G] COG2513 PEP phosphonomutase and related enzymes - 39 --mp--yqvdrlbcefghsnuj-itw Rpe [G] COG0036 Pentose-5-phosphate-3-epimerase - 85 --------v-rlb-efgh---j--t- RbsB [G] COG1879 Periplasmic sugar-binding proteins - 215 aompkzyqvd-lbcefghsnujxit- RhaT [GER] COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily - 806 aompkzyqvdrlbcefghsnujxitw ProP [GEPR]COG0477 Permeases of the major facilitator superfamily - 39 aompkz-qvdr-bcefg-snujx-t- PpsA [G] COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase - 31 ---------d-lb-efghsn-j-itw PtsA [G] COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) - 10 ------y--dr--ce-g----j---- Pgm [G] COG0033 Phosphoglucomutase - 21 ------y---rl--e--hsn-j-it- GpmA [G] COG0588 Phosphoglycerate mutase 1 - 14 -o----------bcefg---u----w GpmI [G] COG0696 Phosphoglyceromutase - 25 --mp---q--r--cefgh-nuj---- GmhA [G] COG0279 Phosphoheptose isomerase - 92 aompkzyqvdrlbcefghsnujxitw CpsG [G] COG1109 Phosphomannomutase - 18 a-----y-vdrlb-e-gh------t- ManA [G] COG1482 Phosphomannose isomerase - 15 --------vd-lb-e-g---uj---- DeoB [G] COG1015 Phosphopentomutase - 31 -----------lb-efgh---j--tw NagE [G] COG2190 Phosphotransferase system IIA components - 62 -----------lb-efgh---j--tw PtsG [G] COG1264 Phosphotransferase system IIB components - 57 -----------lb-efgh---j--tw PtsG [G] COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific - 12 -----------lb-e-g-------t- CelC [G] COG1447 Phosphotransferase system cellobiose-specific component IIA - 11 -----------lb-e-g-------t- CelA [G] COG1440 Phosphotransferase system cellobiose-specific component IIB - 15 -----------lb-e-g-------t- CelB [G] COG1455 Phosphotransferase system cellobiose-specific component IIC - 9 -----------lb-e-gh-------w SgaB [G] COG3414 Phosphotransferase system component IIB of unknown specificity - 29 ---------d-lb-efgh------tw FrwB [G] COG1445 Phosphotransferase system fructose-specific component IIB - 76 ---------d-lb-efgh-n-j-itw PtsN [GT] COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) - 5 ------------b-e--h---j---- SrlB [G] COG3731 Phosphotransferase system sorbitol-specific component IIA - 6 ------------b-e--h---j---- SrlE [G] COG3732 Phosphotransferase system sorbitol-specific component IIBC - 6 ------------b-e--h---j---- SrlA [G] COG3730 Phosphotransferase system sorbitol-specific component IIC - 45 ---------d-lb-efghsn-j-itw FruB [G] COG1925 Phosphotransferase system, HPr-related proteins - 26 ---------d-lb-efgh------tw FruA [G] COG1299 Phosphotransferase system, fructose-specific IIC component - 6 -----------lb-e----------- GatC [G] COG3775 Phosphotransferase system, galactitol-specific IIC component - 10 ------------b-e-gh-------w MtlA [G] COG2213 Phosphotransferase system, mannitol-specific IIBC component - 17 -----------lb-e--hsn-j---- ManX [G] COG2893 Phosphotransferase system, mannose/fructose-specific component IIA - 13 -----------lb-e--h-------- - [G] COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB - 13 -----------lb-e--h-------- ManY [G] COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC - 12 -----------lb-e--h-------- ManZ [G] COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID - 7 ---p----vd------g----j---- - [G] COG2971 Predicted N-acetylglucosamine kinase - 8 --------------e-ghsn------ - [G] COG2956 Predicted N-acetylglucosaminyl transferase - 3 --m-----vd---------------- - [G] COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase - 7 ----kz-qv----------------- - [G] COG2152 Predicted glycosylase - 14 a-mpkz-qvd---------------- - [G] COG3635 Predicted phosphoglycerate mutase, AP superfamily - 32 aompkzyqvdrlbcefg-snuj---- - [G] COG0063 Predicted sugar kinase - 26 ao--kzyqv-rlb-ef----ujx--- NagD [G] COG0647 Predicted sugar phosphatases of the HAD superfamily - 52 ---pk-y-vdrlbcefg-s-uj---- CDA1 [G] COG0726 Predicted xylanase/chitin deacetylase - 19 --------vdrlbcefgh---j-i-- GlgX [G] COG1523 Pullulanase and related glycosidases - 8 -----------l--e-gh-------w SgaU [G] COG3623 Putative L-xylulose-5-phosphate 3-epimerase - 8 -----------l--e-gh------t- NanE [G] COG3010 Putative N-acetylmannosamine-6-phosphate epimerase - 5 ----------rl------s--j---- - [G] COG3537 Putative alpha-1,2-mannosidase - 9 ---pkz--vd-----f-----j---- GckA [G] COG2379 Putative glycerate kinase - 43 -ompkzy-vdrlbcefghsnuj-itw PykF [G] COG0469 Pyruvate kinase - 30 aompkzy--d-l-cefghsn-j-it- RpiA [G] COG0120 Ribose 5-phosphate isomerase - 22 -------qv-rlbce--h--ujx--w RpiB [G] COG0698 Ribose 5-phosphate isomerase RpiB - 82 --------v-rlb-efgh---j--t- AraH [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components - 8 a-m-k-------bc-------j---- RbcL [G] COG1850 Ribulose 1,5-bisphosphate carboxylase, large subunit - 47 aompkzyqv-rlb-efghs-ujx--w AraD [G] COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases - 46 a----zy-v-rlbcef-h---j--t- XylB [G] COG1070 Sugar (pentulose and hexulose) kinases - 16 a-mp-z-qv---bcefgh---j---- SfsA [G] COG1489 Sugar fermentation stimulation protein (uncharacterized) - 106 aompkzy-vdrlbcefghs--j---- RbsK [G] COG0524 Sugar kinases, ribokinase family - 97 -o-pkz--vdrlbcefghs--j--tw UgpE [G] COG0395 Sugar permeases - 51 a-m-k---v-r-bcef-----j---- IolE [G] COG1082 Sugar phosphate isomerases/epimerases - 24 -----------lb-efgh--u-xi-- UhpC [G] COG2271 Sugar phosphate permease - 84 -o-pkz--vdrlbcefghs--j--t- UgpB [G] COG1653 Sugar-binding periplasmic proteins/domains - 5 -----------l--e------j---- LacD [G] COG3684 Tagatose-1,6-bisphosphate aldolase - 7 a---k-------bc-------j---- - [GR] COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes - 39 --mp--yqvdrlbcefgh-nuj-i-- MipB [G] COG0176 Transaldolase - 56 --mpkzyqvdrlbcefghsnuj-itw TktA [G] COG0021 Transketolase - 13 ----k-y---rlb-e----n------ ATH1 [G] COG1554 Trehalose and maltose hydrolases (possible phosphorylases) - 10 --mp--y---r---e------j---- OtsB [G] COG1877 Trehalose-6-phosphatase - 15 --mp--y---r--ce------j---- OtsA [G] COG0380 Trehalose-6-phosphate synthase - 44 aompkzyqvdrlbcefghsnuj-itw TpiA [G] COG0149 Triosephosphate isomerase - 14 --------v--lb-e-gh---j---- RbsD [G] COG1869 Uncharacterized components of ribose/xylose transport systems - 4 ------------b--------j---- IolB [G] COG3718 Uncharacterized enzyme involved in inositol metabolism - 14 ------y----l-cefghs--j---- - [G] COG0676 Uncharacterized enzymes related to aldose 1-epimerase - 3 -----z----r----f---------- Ble [G] COG3281 Uncharacterized protein, probably involved in trehalose biosynthesis - 8 --------v--lb-e--h---j---- XylA [G] COG2115 Xylose isomerase - 9 ----k---v-----e-g---uj---- Acd [E] COG2515 1-Aminocyclopropane-1-carboxylate deaminase - 47 -ompkzy--drlbcefg-sn-j---- CysH [EH] COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes - 24 ------y--d-l--efghsn-j---- AroG [E] COG0722 3-Deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase - 13 ---pkz--vd-lbc-----n---i-- AroA [E] COG2876 3-Deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase - 10 ----------r----f----uj---- AroG [E] COG3200 3-Deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase - 19 aompkzyq---lb-e----n---i-- AroD [E] COG0710 3-dehydroquinate dehydratase - 19 --------vdr-bcefghs-uj---- AroQ [E] COG0757 3-dehydroquinate dehydratase II - 31 ---pkzy-vdrlbcefghsnuj-i-- AroB [E] COG0337 3-dehydroquinate synthetase - 35 aom-k-yqvdrlbcefghsnuj---- LeuC [E] COG0065 3-isopropylmalate dehydratase large subunit - 34 a-m-k-yqvdrlbcefghsnuj---- LeuD [E] COG0066 3-isopropylmalate dehydratase small subunit - 6 -------------c-fg----j---- - [ER] COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins - 28 ---pkzyqvd-lbcefghsnuj---- MetF [E] COG0685 5,10-methylenetetrahydrofolate reductase - 5 ---------d-----fgh-------- HpaF [E] COG3232 5-Carboxymethyl-2-hydroxymuconate isomerase - 38 aompkzyqvdrlbcefghsnuj-i-- AroA [E] COG0128 5-enolpyruvylshikimate-3-phosphate synthase - 136 a----z--vdrlbcefgh-nujxit- ArtI [E] COG0834 ABC-type amino acid transport system, periplasmic component - 117 a----z--vd-lbcefgh-nujxi-- ArtM [E] COG0765 ABC-type amino acid transport system, permease component - 30 a-m--z--vd--bcef----uj---- LivF [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component - 30 a-m--z--vd--bcef----uj---- LivG [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component - 41 aom--z--vd--bcef----uj---- LivK [E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component - 88 ao-pkz-qvd-lb-efgh--uj-itw DppD [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component - 91 ao-pkz-qvd-lb-efgh--uj-itw OppF [EP] COG1124 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component - 173 ao-pkz-qvdrlbcefgh--uj-itw OppA [EP] COG0747 ABC-type dipeptide/oligopeptide/nickel transport systems, periplasmic components - 125 ao-pkz-qvdrlbcefgh--uj-itw DppB [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components - 124 ao-pkz-qvdrlbcefgh--uj-itw DppC [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components - 67 a----z--vd-lbcefgh-nujxi-- GlnQ [E] COG1126 ABC-type polar amino acid transport system, ATPase component - 23 a--------drlb-ef----uj--t- ProV [E] COG1125 ABC-type proline/glycine betaine transport systems, ATPase components - 15 -----------lb-ef-----j--t- ProX [E] COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components - 32 a--------drlb-ef----uj--t- ProW [E] COG1174 ABC-type proline/glycine betaine transport systems, permease component - 51 ao---z--vd-l--efgh-nuj--tw PotB [E] COG1176 ABC-type spermidine/putrescine transport system, permease component I - 51 ao---z--vd-l--efgh-nuj--tw PotC [E] COG1177 ABC-type spermidine/putrescine transport system, permease component II - 64 ao---z--vd-l-cefgh-nuj--tw PotA [E] COG3842 ABC-type spermidine/putrescine transport systems, ATPase components - 3 a-m----------------------- - [E] COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase - 28 aom---yqvdrlbcefghsnuj---- HisG [E] COG0040 ATP phosphoribosyltransferase (histidine biosynthesis) - 7 ---------d--bc-f---n------ HisZ [E] COG3705 ATP phosphoribosyltransferase involved in histidine biosynthesis - 35 a-m-kzyqvdrlbcefghsnuj---- IlvH [E] COG0440 Acetolactate synthase, small subunit - 37 a-m-kzyqvdrlbcefghsnuj---- ArgB [E] COG0548 Acetylglutamate kinase - 29 a-m-kzyqvdrlbcefghsnuj---- ArgC [E] COG0002 Acetylglutamate semialdehyde dehydrogenase - 99 a-mpkzyqvdrlb-efghsnujxi-- ArgE [E] COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases - 15 ------y--drlbc--g---uj---- Ald [E] COG0686 Alanine dehydrogenase - 19 ----k-y--dr-b-efgh-nuj---- DUR1 [E] COG2049 Allophanate hydrolase subunit 1 - 19 ----k-y--dr-b-efgh-nuj---- DUR1 [E] COG1984 Allophanate hydrolase subunit 2 - 48 ------y-------efgh-nu--i-- SdaC [E] COG0814 Amino acid permeases - 151 aomp-zy---rlbcefghs--jxi-w PotE [E] COG0531 Amino acid transporters - 31 ------y----lb-ef----u----- LysP [E] COG0833 Amino acid transporters - 4 ------y----l------------t- PepC [E] COG3579 Aminopeptidase C - 27 ---p--y--drl-cefghsn-j---- PepN [E] COG0308 Aminopeptidase N - 6 -o------------e-gh-------- GlpB [E] COG3075 Anaerobic glycerol-3-phosphate dehydrogenase - 39 aompkzyqvdrlbcefghsnuj---- TrpD [E] COG0547 Anthranilate phosphoribosyltransferase - 63 aompkzyqvdrlbcefghsnuj---- TrpE [EH] COG0147 Anthranilate/para-aminobenzoate synthases component I - 49 aompkzyqvdrlbcefghsnuj---- PabA [EH] COG0512 Anthranilate/para-aminobenzoate synthases component II - 3 a-m----------------------- - [E] COG1411 Archaeal family of HisA paralogs - 8 aompkz-------------------- - [EH] COG1685 Archaeal shikimate kinase - 46 aompkzy--d-lbcefghsnuj---- SpeB [E] COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family - 14 ---------d---cefghsnu----- SpeA [E] COG1166 Arginine decarboxylase (spermidine biosynthesis) - 13 -o-p------rl---fg----j--tw ArcA [E] COG2235 Arginine deiminase - 17 --------vdrlb-e-gh-----i-- ArgR [E] COG1438 Arginine repressor - 23 ----------r-bcefgh-------- LdcC [E] COG1982 Arginine/lysine/ornithine decarboxylases - 7 --------------efg----j---- AstA [E] COG3138 Arginine/ornithine N-succinyltransferase beta subunit - 30 aomp--yqvdrlbcefghsnuj---- ArgH [E] COG0165 Argininosuccinate lyase - 29 aomp--yqvdrlbcefghsnuj---- ArgG [E] COG0137 Argininosuccinate synthase - 12 -o-pk--------ce-g----j---- - [E] COG1446 Asparaginase - 35 aompkzy---rlb-efg-s--j---- AsnB [E] COG0367 Asparagine synthase (glutamine-hydrolyzing) - 7 -----------l--e--h------tw AsnA [E] COG2502 Asparagine synthetase A - 16 ---p----v---b-efgh-nu----- AspA [E] COG1027 Aspartate ammonia-lyase - 43 aompkzyqvdrlbcefghsnujxi-- Asd [E] COG0136 Aspartate-semialdehyde dehydrogenase - 20 ------y-------efghsn-j-i-- TyrB [E] COG1448 Aspartate/aromatic aminotransferase - 54 aompkzyqvdrlbcefghsnujxi-- LysC [E] COG0527 Aspartokinases - 8 ------y-v-r----f--------t- LAP4 [E] COG1362 Aspartyl aminopeptidase - 5 a-m-----------e----------- HgdB [E] COG1775 Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB - 67 a-m--z--vd-lbcefg---ujx--- LivM [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components - 62 aom---yqvdrlbcefghsnujx--- IlvE [EH] COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase - 13 -----------lb-efgh-----it- BrnQ [E] COG1114 Branched-chain amino acid permeases - 20 -o-pkz-----l-cef-h-------w ArcC [E] COG0549 Carbamate kinase - 39 aomp--yqvdrlbcefghsnuj---- CarB [EF] COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) - 34 aomp--yqvdrlbcefghsnuj---- CarA [EF] COG0505 Carbamoylphosphate synthase small subunit - 6 ------y--d--------s--j---- - [E] COG2939 Carboxypeptidase C (cathepsin A) - 42 aomp-zyqvdrlb-efghsnuj---- PheA [E] COG1605 Chorismate mutase - 36 aompkzyqvdrlbcefghsnuj-i-- AroC [E] COG0082 Chorismate synthase - 68 -o-pkzy-vdrlbcefghsnuj---- MetC [E] COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases - 45 a-----yqvdrlbcefgh-nujxit- NifS [E] COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes - 60 -o-pkzyqvdrlbcefghsnuj---- CysK [E] COG0031 Cysteine synthase - 6 ----kz---d--b--------j---- DppA [E] COG2362 D-aminopeptidase - 6 ------------b-efg--------- DsdA [E] COG3048 D-serine dehydratase - 20 ---------d-lb-e-gh--uj--t- PepD [E] COG2195 Di- and tripeptidases - 44 a-mp--yqvdrlbcefghsnuj---- LysA [E] COG0019 Diaminopimelate decarboxylase - 28 a-m----qv-r-bcefghsnujxi-- DapF [E] COG0253 Diaminopimelate epimerase - 29 a-m----qv-rlbcefghsnujxi-- DapB [E] COG0289 Dihydrodipicolinate reductase - 57 aompkz-qv-rlbcefghsnujxi-- DapA [EM] COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase - 47 a-m-kzyqvdrlbcefghsnuj---- IlvD [EG] COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase - 16 ------y----lb-e-g-sn-j---- PTR2 [E] COG3104 Dipeptide/tripeptide permease - 33 -o-pkzy-vd--bc-f-hs--j---- DAP2 [E] COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases - 4 ------------b-ef---------- EutH [E] COG3192 Ethanolamine utilization protein - 4 a-m-----v----------------- - [E] COG1037 Ferredoxin-like domain of glutamine synthase alpha chain - 39 ----------rlb-ef---------- AnsP [E] COG1113 Gamma-aminobutyrate permease and related permeases - 25 ------yqvdrlbcefghsnuj--t- ProA [E] COG0014 Gamma-glutamyl phosphate reductase - 28 ---p-zy--dr-bcefg-snuj---- Ggt [E] COG0405 Gamma-glutamyltranspeptidase - 27 ------yqvdrlbcefghsnuj--t- ProB [E] COG0263 Glutamate 5-kinase - 30 aom-kzy---rlbce-gh---j---- GadB [E] COG0076 Glutamate decarboxylase and related PLP-dependent proteins - 43 ao-pkzy-vd--bcef-h-nuj-i-- GdhA [E] COG0334 Glutamate dehydrogenase/leucine dehydrogenase - 4 ---p----v--l-------------- - [E] COG3643 Glutamate formiminotransferase - 24 a-m---yqvdrlbcefg-s-uj---- GltB [E] COG0067 Glutamate synthase domain 1 - 29 a-m---yqvdrlbcefg-s-uj---- GltB [E] COG0069 Glutamate synthase domain 2 - 25 a-m---yqvdrlbcefg-s-uj---- GltB [E] COG0070 Glutamate synthase domain 3 - 13 ------------bcefg----j---- GlsA [E] COG2066 Glutaminase - 29 aom---yqvdrlbcefghsnuj---- HisH [E] COG0118 Glutamine amidotransferase - 61 aompkzyqvdrlbcefghsnujx--- GlnA [E] COG0174 Glutamine synthase - 12 -------------ce--h--uj---- Gsp [E] COG0754 Glutathionylspermidine synthase - 33 -o-pkzyqvdrlbcefg-sn-j-i-- GcvH [E] COG0509 Glycine cleavage system H protein (lipoate-binding) - 46 -o-pkzyqvdr-bcef--sn-j---- GcvT [E] COG0404 Glycine cleavage system T protein (aminomethyltransferase) - 23 -o-pkzyqvdr-bcef--sn-j---- GcvP [E] COG1003 Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain - 23 -o-pkzyqvdr-bcef--sn-j---- GcvP [E] COG0403 Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain - 8 --------------efg-s--j---- GcvR [E] COG2716 Glycine cleavage system regulatory protein - 50 aompkzyqvdrlbcefghsnujxitw GlyA [E] COG0112 Glycine hydroxymethyltransferase - 115 ao-pkzyq--rlbcefghsnuj-it- DadA [E] COG0665 Glycine/D-amino acid oxidases (deaminating) - 15 -o-p-----d-lb--fg----j---- HutH [E] COG2986 Histidine ammonia-lyase - 30 aom---yqvdrlbcefghsnuj---- HisD [E] COG0141 Histidinol dehydrogenase - 23 a-mpk-yqvdrlb-e-g--------- HIS2 [ER] COG1387 Histidinol phosphatase and related hydrolases of the PHP family - 26 --mp------r--cefghsnuj---- HisB [E] COG0241 Histidinol phosphatase and related phosphatases - 53 aompkzyqvdrlbcefghsnuj---- HisC [E] COG0079 Histidinol-phosphate aminotransferase/Tyrosine aminotransferase - 9 ------y---r-bce------j---- MHT1 [E] COG2040 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) - 16 -om---y--dr----f-hsn-j---- MET2 [E] COG2021 Homoserine acetyltransferase - 43 aompkzyqvdrlbcefghsnuj---- ThrA [E] COG0460 Homoserine dehydrogenase - 28 -ompkzyqvdrlbce-ghs-uj---- ThrB [E] COG0083 Homoserine kinase - 8 --------v--lb-e-g---u----- MetA [E] COG1897 Homoserine trans-succinylase - 27 aom---yqvdrlbcefghsnuj---- HisB [E] COG0131 Imidazoleglycerol-phosphate dehydratase - 29 aom---yqvdrlbcefghsnuj---- HisF [E] COG0107 Imidazoleglycerol-phosphate synthase - 33 aompkzyqvdrlbcefghsnuj---- TrpC [E] COG0134 Indole-3-glycerol phosphate synthase - 42 a-m-k-yqvdrlbcefghsnujx--- LeuB [E] COG0473 Isocitrate/isopropylmalate dehydrogenase - 52 a-mpk-yqvdr-bcefghsnuj---- LeuA [E] COG0119 Isopropylmalate/homocitrate/citramalate synthases - 29 a-m-k-yqvdrlbcefghsnuj---- IlvC [EH] COG0059 Ketol-acid reductoisomerase - 5 -o----y--d-----f-----j---- - [E] COG3844 Kynureninase - 10 ----k----dr----f-----j---- DmpA [EQ] COG3191 L-aminopeptidase/D-esterase - 40 aompkzy--drlb-efghsnu----- AnsB [EJ] COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D - 32 ---------drlb-efgh-nuj---- SdaA [E] COG1760 L-serine deaminase - 135 aom-kzy--drlbcefghsnuj---- GloA [E] COG0346 Lactoylglutathione lyase and related lyases - 38 -----z-q-dr-bcefghsnujxi-w PepB [E] COG0260 Leucyl aminopeptidase - 16 -o--kz-q-d--b--------j--t- AmpS [E] COG2309 Leucyl aminopeptidase (aminopeptidase T) - 18 --m----qvd--b-e-ghs--j--t- KamA [E] COG1509 Lysine 2,3-aminomutase - 35 ------y---rlbcefgh-nuj---- TesA [E] COG2755 Lysophospholipase L1 and related esterases - 5 ---p----vd-l-------------- - [E] COG3404 Methenyl tetrahydrofolate cyclohydrolase - 14 --------vdr-bcefg----j---- MetH [E] COG0646 Methionine synthase I (cobalamin-dependent), methyltransferase domain - 19 a-m-----vdr-bcefgh---j---- MetH [E] COG1410 Methionine synthase I, cobalamin-binding domain - 39 a-mpkzyqv-rlb-efghsnuj-i-- MetE [E] COG0620 Methionine synthase II (cobalamin-independent) - 4 -o------------e------j---- Mal [E] COG3799 Methylaspartate ammonia-lyase - 8 ---------dr-bc-f-----j---- - [E] COG1231 Monoamine oxidase - 8 -----z----r-bc-f-----j---- - [E] COG1834 N-Dimethylarginine dimethylaminohydrolase - 12 -------q-dr---efgh-n------ ArgA [E] COG1246 N-acetylglutamate synthase and related acetyltransferases - 5 ---------------f-----j---- HutG [E] COG3741 N-formylglutamate amidohydrolase - 21 a-mp-zyq--r-bc------uj---- HyuA [E] COG0145 N-methylhydantoinase A - 16 --mp-zyq--r--c------uj---- HyuB [E] COG0146 N-methylhydantoinase B - 9 ------y---r----fg-s--jx--- - [E] COG2902 NAD-specific glutamate dehydrogenase - 45 ---pkzyqvdrlbcefg-s-ujx-t- GltD [ER] COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases - 40 ----k----d-lb-efgh-nu--it- AlsT [E] COG1115 Na+/alanine symporter - 11 -------------cefgh-nu----- GltS [E] COG0786 Na+/glutamate symporter - 72 aompkzyq-d--bcefghsnujxit- PutP [EHR] COG0591 Na+/proline, Na+/panthothenate symporters and related permeases - 10 -----------l--efgh-nu----- SstT [E] COG3633 Na+/serine symporter - 35 a-m----qvdrlbcefghsn-j---- GlnK [E] COG0347 Nitrogen regulatory protein PII - 11 -o----y-vdrlb--f-h--uj---- MET17 [E] COG2873 O-acetylhomoserine sulfhydrylase - 26 -o------vd-lb-------uj-itw - [E] COG1164 Oligoendopeptidase F - 41 aompkzyqvdrlbcefghsnuj--tw ArgF [E] COG0078 Ornithine carbamoyltransferase - 10 ---------drlb-e--h-------- MalY [E] COG1168 PLP-dependent aminotransferase - 79 aompkzyqvdrlbcefghsnuj---- ArgD [E] COG0160 PLP-dependent aminotransferases - 119 aompkzyqvdrlbcefghsnujxit- AvtA [E] COG0436 PLP-dependent aminotransferases - 8 ---------d--b-e--h-------- PepE [E] COG3340 Peptidase E - 8 ---------d-l---f--s-uj---- - [E] COG2957 Peptidylarginine deiminase and related enzymes - 5 ---------------fg----j-i-- - [E] COG3186 Phenylalanine-4-hydroxylase - 60 aompkzyqvdrlbcefghs-uj---- SerA [E] COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases - 27 aom---yqvdrlbcefghsnuj---- HisI [E] COG0139 Phosphoribosyl-AMP cyclohydrolase - 26 -om---yqvdrlbcefghsnuj---- HisI [E] COG0140 Phosphoribosyl-ATP pyrophosphohydrolase - 32 aompkzyqvd-lbcefghsnuj-i-- TrpF [E] COG0135 Phosphoribosylanthranilate isomerase - 27 aom---yqvdrlbcefghsnuj---- HisA [E] COG0106 Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase - 47 aompkzy---rl--efghsnuj---- SerB [E] COG0560 Phosphoserine phosphatase - 8 ---------dr-b-----sn----t- - [E] COG2856 Predicted Zn peptidase - 5 aom----q------------------ - [E] COG1465 Predicted alternative 3-dehydroquinate synthase - 8 ----------r----f-----j---- - [E] COG3616 Predicted amino acid aldolase or racemase - 4 --------v---b-e------j---- - [E] COG3457 Predicted amino acid racemase - 17 a--------d-lb-efgh-nuj---- AzlC [E] COG1296 Predicted branched-chain amino acid permease (azaleucine resistance) - 5 ------------b----h--u----- AzlD [E] COG1687 Predicted branched-chain amino acid permeases (azaleucine resistance) - 13 ------y-----bcef---n-j---- - [E] COG2866 Predicted carboxypeptidase - 15 aomp-zy--------f-----j---- - [E] COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog - 29 aomp--yqvdrlbcefghsnuj---- PheA [E] COG0077 Prephenate dehydratase - 31 aomp-zyqvdrlbcefghsnuj---- TyrA [E] COG0287 Prephenate dehydrogenase - 20 -o----y--dr-bcef-h-nuj---- PutA [E] COG0506 Proline dehydrogenase - 12 ----------r---efg-s--jx--- PtrB [E] COG1770 Protease II - 16 ao-pkz---dr-b-e------j---- ArgK [E] COG1703 Putative periplasmic protein kinase ArgK and related GTPases of G3E family - 68 a-mp-z--vd--bcefghs-uj---- RhtB [E] COG1280 Putative threonine efflux protein - 35 --mp-zyqvdrlbcefghsnuj--t- ProC [E] COG0345 Pyrroline-5-carboxylate reductase - 19 a-mpkz-qv---b-ef--s------- SpeD [E] COG1586 S-adenosylmethionine decarboxylase - 17 a--pkzy--d--bc--gh--uj---- LYS9 [E] COG1748 Saccharopine dehydrogenase and related proteins - 53 -om-kz--vdrlbcefghs-uj-itw CsdB [E] COG0520 Selenocysteine lyase - 13 --mp---q------ef-h--uj---- SelA [E] COG1921 Selenocysteine synthase [seryl-tRNASer selenium transferase] - 8 --m----q------ef-h--u----- SelD [E] COG0709 Selenophosphate synthase - 29 -o------v-rlbcefgh-nuj---- CysE [E] COG1045 Serine acetyltransferase - 10 ----k----dr--------n-jx--- - [E] COG1505 Serine proteases of the peptidase family S9A - 28 aompkzyqvd-lbc-fg---uj---- - [E] COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase - 43 aompkzyqvdrlbcefghsnuj-i-- AroE [E] COG0169 Shikimate 5-dehydrogenase - 32 ------yqvdrlbcefghsnuj-i-- AroK [E] COG0703 Shikimate kinase - 31 a-mpkzyqvdr-b-ef--snuj---- SpeE [E] COG0421 Spermidine synthase - 72 ao---z--vd-l-cefgh-n-j--tw PotD [E] COG0687 Spermidine/putrescine-binding periplasmic protein - 5 --------------ef-----j---- AstB [E] COG3724 Succinylarginine dihydrolase - 5 -------------cefg--------- - [E] COG2988 Succinylglutamate desuccinylase - 22 --------v-rlb-efghsnujx--- DapD [E] COG2171 Tetrahydrodipicolinate N-succinyltransferase - 97 a-mpkzyqvdrlbcefghsnuj---- IlvB [EH] COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] - 13 -o----y-vd--b-efg----j---- GLY1 [E] COG2008 Threonine aldolase - 42 -o-p-zy-vdrlbcefghsnujx--- IlvA [E] COG1171 Threonine dehydratase - 81 ao-pkzy-vdrlb-efghsn-j---w Tdh [ER] COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases - 47 aompkzyqvdrlbcefghsnuj---- ThrC [E] COG0498 Threonine synthase - 5 --------------e-gh-------- MetJ [EK] COG3060 Transcriptional regulator of met regulon - 44 a-m-k--qvdr-bc-f-hs--j---- - [E] COG1305 Transglutaminase-like enzymes, putative cysteine proteases - 4 ---------d-----f-----j---- TDO2 [E] COG3483 Tryptophan 2,3-dioxygenase (vermilion) - 34 aompkzyqvdrlbcefghsnuj-i-- TrpA [E] COG0159 Tryptophan synthase alpha chain - 31 aom-k-yqvdrlbcefghsnuj-i-- TrpB [E] COG0133 Tryptophan synthase beta chain - 7 -o---z--------e-gh-------- TnaA [E] COG3033 Tryptophanase - 7 -------------cefgh-------- CysZ [E] COG2981 Uncharacterized protein involved in cysteine biosynthesis - 13 ---------dr-bcef-h--uj---w UreC [E] COG0804 Urea amidohydrolase (urease) alpha subunit - 13 ---------dr-bcef-h--uj---w UreB [E] COG0832 Urea amidohydrolase (urease) beta subunit - 13 ---------dr-bcef-h--uj---w UreA [E] COG0831 Urea amidohydrolase (urease) gamma subunit - 5 ------y-------ef-----j---- DAL3 [E] COG3194 Ureidoglycolate hydrolase - 11 -o-p-----d-lb--fg----j---- HutU [E] COG2987 Urocanate hydratase - 5 ------------b-e------j---- - [E] COG3591 V8-like Glu-specific endopeptidase - 24 --------v--lbcefgh---jxi-- PhnK [EPGR]COG1101 Various ABC transport systems, ATPase components - 79 aompkzyqvdrlbcefghsnujxitw PepP [E] COG0006 Xaa-Pro aminopeptidase - 4 ------------b--fg--------- LasB [E] COG3227 Zinc metalloprotease (elastase) - 9 -o--kz---d--b---g----j---- - [E] COG2317 Zn-dependent carboxypeptidases - 13 ----kz---d--b--f-----j-i-- - [E] COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog - 19 ------y--d---cefghsn-j---- Dcp [E] COG0339 Zn-dependent oligopeptidases - 40 aom---yqvd-lbce-gh--uj--t- UshA [F] COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases - 27 a-m-kz-q-dr--c-fg--n-j---- - [F] COG1051 ADP-ribose pyrophosphatase - 28 ao-p--yqvdrlbcefghsnuj---- PurH [F] COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) - 12 a-m------d--b-e------j--t- AdeC [F] COG1001 Adenine deaminase - 54 -om-kzy-vdrlbcefgh-nuj--tw Apt [F] COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins - 11 ------y---rl--efg----j--t- Add [F] COG1816 Adenosine deaminase - 11 ----------rlb-efg----j---- Ada [F] COG2169 Adenosine deaminase - 6 --------------efgh-------- CyaA [F] COG3072 Adenylate cyclase - 10 aom-kz------------------t- CyaB [F] COG1437 Adenylate cyclase, class 2 (thermophilic) - 53 ao--k-yqvdrlbcefghsnujxitw Adk [F] COG0563 Adenylate kinase and related kinases - 40 aompk-yqvdrlbcefghsnuj---- PurB [F] COG0015 Adenylosuccinate lyase - 34 aompk-yqvdrlbcefghsnuj---- PurA [F] COG0104 Adenylosuccinate synthase - 8 --mpkz-------------------- AdkA [F] COG2019 Archaeal adenylate kinase - 16 aompkz--v-----e-g--n------ PyrI [F] COG1781 Aspartate carbamoyltransferase regulatory subunit - 33 aompkzyqvdrlbcefg-snuj---- PyrB [F] COG0540 Aspartate carbamoyltransferase, catalytic chain - 43 aompkzyqvdrlbcefghsnujxitw PyrG [F] COG0504 CTP synthase (UTP-ammonia lyase) - 22 -o---zy-vdrlb-e-gh---j--tw Cdd [F] COG0295 Cytidine deaminase - 30 -------qvdrlbcefghsn-jxitw Cmk [F] COG0283 Cytidylate kinase - 11 aompkz------------------t- Cmk [F] COG1102 Cytidylate kinase 2 - 52 aompkzyqvd--bcef-hs-uj---- SsnA [FR] COG0402 Cytosine deaminase and related metal-dependent hydrolases - 35 ------yq-drlbcefghsn-jxi-- - [FJ] COG0590 Cytosine/adenosine deaminases - 14 -----zy-----b-ef-----j---- FUI1 [FH] COG1953 Cytosine/uracil/thiamine/allantoin permeases - 7 ------y--------f----uj--t- NUC1 [F] COG1864 DNA/RNA endonuclease G, NUC1 - 35 aompkz-q--r-bcef-hsnujxi-- Dcd [F] COG0717 Deoxycytidine deaminase - 15 a--pk-y-vd-lb---g-------t- ComEB [F] COG2131 Deoxycytidylate deaminase - 11 ---------d-lb-----------tw - [F] COG1428 Deoxynucleoside kinases - 25 -omp-z-qvdrlbce-gh---j--tw DeoC [F] COG0274 Deoxyribose-phosphate aldolase - 70 aompkzyq-drlbcefghsnujxitw Hit [FGR] COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases - 12 ------y------cefg--nu----- PyrC [F] COG0418 Dihydroorotase - 42 aompkzyqvdrlbcef--s-uj---- PyrC [F] COG0044 Dihydroorotase and related cyclic amidohydrolases - 41 aompkzyqvdrlbcefghsnuj---- PyrD [F] COG0167 Dihydroorotate dehydrogenase - 31 ------yqvdr-bcefghsnujx--- GppA [FP] COG0248 Exopolyphosphatase - 27 -o-p--yqvdrlbcefghsnuj---- PurN [F] COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN - 11 --m-k-----r-bcefgh-------- PurT [F] COG0027 Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) - 19 -o-----q-dr-bcefghs-uj---- PurU [F] COG0788 Formyltetrahydrofolate hydrolase - 13 ---p--y-v--l----g--n-j---w MIS1 [F] COG2759 Formyltetrahydrofolate synthetase - 50 aompkzyqvdrlbcefghsnuj-it- GuaA [F] COG0518 GMP synthase - Glutamine amidotransferase domain - 36 aompkzyqvdrlbcefghsnuj-it- GuaA [F] COG0519 GMP synthase - PP-ATPase domain - 31 aompk-yqvdrlbcefghsnuj---- PurF [F] COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase - 32 ------yqvdrlbcefghsnujxi-w Gmk [F] COG0194 Guanylate kinase - 24 -------qvdrlb-efghsn-j---w Hpt [F] COG0634 Hypoxanthine-guanine phosphoribosyltransferase - 92 -ompkzyqvdrlbcefghsnuj-it- GuaB [F] COG0516 IMP dehydrogenase/GMP reductase - 17 ------y--dr-b-ef-h--uj---- URH1 [F] COG1957 Inosine-uridine nucleoside N-ribohydrolase - 7 -----------l---f-----j--tw - [F] COG3613 Nucleoside 2-deoxyribosyltransferase - 36 aompkzyq-dr-bcefghsnujxit- Ndk [F] COG0105 Nucleoside diphosphate kinase - 19 -----------lb-e-gh--uj---- NupC [F] COG1972 Nucleoside permease - 37 --------vdrlb-efgh-nuj-itw Pfs [F] COG0775 Nucleoside phosphorylase - 13 ------y---r---efghsn------ Orn [F] COG1949 Oligoribonuclease (3'->5' exoribonuclease) - 38 aompkzyqvdrlbcefghsnuj-i-- PyrE [F] COG0461 Orotate phosphoribosyltransferase - 6 aomp---------------------- - [F] COG0856 Orotate phosphoribosyltransferase homologs - 35 aompkzyqvdrlbcefghsnuj---- PyrF [F] COG0284 Orotidine-5'-phosphate decarboxylase - 15 --m-k---v--l--efgh-------- NrdD [F] COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase - 33 aompk-yqvdrlbcefghsnuj---- PurD [F] COG0151 Phosphoribosylamine-glycine ligase - 31 aompk-yqvdrlbcefghsnuj---- PurM [F] COG0150 Phosphoribosylaminoimidazol (AIR) synthetase - 25 -o-p--yqvdrlbcefghsn-j---- PurK [F] COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) - 34 aompk-yqvdrlbcefghsnujx--- PurC [F] COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase - 31 aompk-yqvdrlbcefghsnuj---- PurE [F] COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase - 20 aompk--qvdrlbc------uj---- PurS [F] COG1828 Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component - 31 aompk-yqvdrlbcefghsnuj---- PurL [F] COG0047 Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain - 31 aompk-yqvdrlbcefghsnuj---- PurL [F] COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain - 47 aompkzyqvdrlbcefghsnuj--tw PrsA [FE] COG0462 Phosphoribosylpyrophosphate synthetase - 19 -o-pkz-qv-r--c------u-xit- THY1 [F] COG1351 Predicted alternative thymidylate synthase - 10 aompkzy------------------- - [F] COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) - 12 ---------drlb-e----------w NrdI [F] COG1780 Protein involved in ribonucleotide reduction - 30 aompkzyqv-rlbcef--s--j---- Pnp [F] COG0005 Purine nucleoside phosphorylase - 20 ---pk-y-----b-ef-h-n------ CodB [F] COG1457 Purine-cytosine permease and related proteins - 19 -----z---d-lb-e-gh--uj--tw DeoD [F] COG0813 Purine-nucleoside phosphorylase - 10 ---------drlbc-f-h-------- PyrR [F] COG2065 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase - 58 aompkzyqvdrlbcefghsnujxitw NrdA [F] COG0209 Ribonucleotide reductase alpha subunit - 39 -o----yq-drlbcefghsnujxitw NrdF [F] COG0208 Ribonucleotide reductase beta subunit - 18 -o-p----vd-lb-e-gh---j--tw Tdk [F] COG1435 Thymidine kinase - 18 a-m-k---vdrlb-e-g----j---w DeoA [F] COG0213 Thymidine phosphorylase - 46 aompkzyqvdrlbcefghsnujxitw Tmk [F] COG0125 Thymidylate kinase - 26 a-m---y--drlb-efghsn-j---w ThyA [F] COG0207 Thymidylate synthase - 17 -------q-dr-bcefg-snuj---- ThiG [F] COG2022 Uncharacterized enzyme of thiazol biosynthesis - 30 -om-kzyqvdrlbcefgh-nuj--tw Upp [F] COG0035 Uracil phosphoribosyltransferase - 23 -o----y-vd-lbce-gh-----itw Udk [F] COG0572 Uridine kinase - 13 -o---z----rl--e-gh------t- Udp [F] COG2820 Uridine phosphorylase - 42 aompkz-qvdrlbcefghsnujxitw PyrH [F] COG0528 Uridylate kinase - 39 ----k---vd-lb-efgh-n------ UraA [F] COG2233 Xanthine/uracil permeases - 37 aompkzyqvdrlbcefghsnuj-it- - [F] COG0127 Xanthosine triphosphate pyrophosphatase - 17 ---------dr--cefgh---jx--- Dgt [F] COG0232 dGTP triphosphohydrolase - 28 ------yq--rlb-ef-hsnujxit- Dut [F] COG0756 dUTPase - 14 -o------v-rlbce-gh-------- MenA [H] COG1575 1,4-dihydroxy-2-naphthoate octaprenyltransferase - 12 ------y-------efghsn-jx--- UbiG [H] COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase - 55 ------y--dr-bcefghsn-jx--- UbiH [HC] COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases - 39 a-mpk-yqv-rlb-efg--n----t- UbiB [HC] COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases - 11 -o--------rlbce-gh-------- MenD [H] COG1165 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase - 35 aom--zyqvdrlbcefghsnuj-i-- RibB [H] COG0108 3,4-dihydroxy-2-butanone 4-phosphate synthase - 29 a-mpkzyq-d--bcefgh-nujxi-- UbiX [H] COG0163 3-polyprenyl-4-hydroxybenzoate decarboxylase - 33 a-mpkzyq-d--bcefgh-nujxi-- UbiD [H] COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases - 12 a-m-------r---efgh-n------ UbiC [H] COG3161 4-Hydroxybenzoate synthetase (chorismate lyase) - 45 aompkzyq-dr-bcefghsnujxi-- UbiA [H] COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases - 39 -o-p--yqvdrlbcefghsnujxitw FolD [H] COG0190 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase - 34 -om--zyq-drlbcefghsnujxitw - [H] COG0212 5-formyltetrahydrofolate cyclo-ligase - 33 aompk--qv---bcefghsnujx--- - [H] COG0720 6-pyruvoyl-tetrahydropterin synthase - 30 ------yqvdrlbcefghsnuj-i-- FolK [H] COG0801 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase - 49 --mpk-yq-dr-bcefghsnujxi-- BioF [H] COG0156 7-keto-8-aminopelargonate synthetase and related enzymes - 46 -o--kz---d-lbcefghsnuj--t- TbpA [H] COG1840 ABC-type iron/thiamine transport systems, periplasmic component - 38 -o--kz---d--bcefgh-nuj--t- ThiP [H] COG1178 ABC-type iron/thiamine transport systems, permease components - 6 --------------e-gh---j---- ThiQ [H] COG3840 ABC-type thiamine transport systems, ATPase components - 15 -o-pk---vdr--cefg----j---- BtuR [H] COG2109 ATP:corrinoid adenosyltransferase - 10 ---------dr-bcefg----j---- CobU [H] COG2087 Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase - 49 --m---yq-dr-b-efghsnuj-i-- BioA [H] COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase - 4 a-m--z-------------------- - [H] COG1731 Archaeal riboflavin synthase - 20 -------qvdr-bcef--snuj---- PanD [H] COG0853 Aspartate 1-decarboxylase - 19 -o--k--q--r-bcefg-sn-j---- NadB [H] COG0029 Aspartate oxidase - 33 --m---yqv-r-bcefghsnuj-i-- BioB [H] COG0502 Biotin synthase and related enzymes - 38 aom-k-yqvdrlbcefghsnujxit- BirA [H] COG0340 Biotin-(acetyl-CoA carboxylase) ligase - 7 a-mp---------c-f---------- CbiD [H] COG1903 Cobalamin biosynthesis protein CbiD - 10 aomp---------c-f-----j---- CbiG [H] COG2073 Cobalamin biosynthesis protein CbiG - 10 aom----------c---h-------- CbiM [H] COG0310 Cobalamin biosynthesis protein CbiM - 16 aompkz---dr-bc-fg----j---- CbiB [H] COG1270 Cobalamin biosynthesis protein CobD/CbiB - 21 -om-------r--c-f-----j---- CobN [H] COG1429 Cobalamin biosynthesis protein CobN and related Mg-chelatases - 19 aompkz---dr-bcefg----j---- CobS [H] COG0368 Cobalamin-5-phosphate synthase - 17 aomp-----dr-bc-fg----j---- CobQ [H] COG1492 Cobyric acid synthase - 12 aomp-----dr-bc-f-----j---- CobB [H] COG1797 Cobyrinic acid a,c-diamide synthase - 11 a-m------d--b-e-g-s------- PaaK [H] COG1541 Coenzyme F390 synthetase - 10 ------y------cefg-s--jx--- HemF [H] COG0408 Coproporphyrinogen III oxidase - 54 -------qvdrlbcefghsnujxitw HemN [H] COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases - 31 aomp-zyq-dr-bcefghsnujxi-- HemB [H] COG0113 Delta-aminolevulinic acid dehydratase - 16 a-m---y--dr-b-efgh---j---- MenG [H] COG0684 Demethylmenaquinone methyltransferase - 29 -------qvdrlbcefghsnuj-it- Dxs [HI] COG1154 Deoxyxylulose-5-phosphate synthase - 44 aompkzyqvdrlbcefghsnujxitw CoaE [H] COG0237 Dephospho-CoA kinase - 31 --m---yq--r-bcefghsnuj-i-- BioD [H] COG0132 Dethiobiotin synthetase - 39 ------y-vdrlb-efghsn-j-i-w FolA [H] COG0262 Dihydrofolate reductase - 27 ------y--drlbcefghsnuj-i-- FolB [H] COG1539 Dihydroneopterin aldolase - 42 aompkzyqvdrlbcefghsnuj-i-- FolP [H] COG0294 Dihydropteroate synthase and related enzymes - 12 ao--------rlbce-gh-------- MenB [H] COG0447 Dihydroxynaphthoic acid synthase - 16 ------y-----b-efghsnu----- - [H] COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 - 48 aompkzyq-dr-bcefghsnuj---- ThiF [H] COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 - 33 ------yqvdrlbcefghsnuj-itw RibF [H] COG0196 FAD synthase - 35 -o-p--yqvdrlbcefghsnujx-t- FolC [H] COG0285 Folylpolyglutamate synthase - 25 ------yq-drlbcefghs-ujx--- FolE [H] COG0302 GTP cyclohydrolase I - 39 a--p--yqvdrlbcefghsnuj-i-- RibA [H] COG0807 GTP cyclohydrolase II - 9 aompkz-------------------- - [H] COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase - 6 --------------efgh-------- GshA [H] COG2918 Gamma-glutamylcysteine synthetase - 4 ----------r-------s--j---- GshA [H] COG3572 Gamma-glutamylcysteine synthetase - 74 aompkzyqvdrlbcefghsnujxit- IspA [H] COG0142 Geranylgeranyl pyrophosphate synthase - 35 aomp-z-q-dr-bcefghsnuj-i-- DodA [H] COG0001 Glutamate-1-semialdehyde aminotransferase - 27 aomp-z-q-dr-bcefghsnu--i-- HemA [H] COG0373 Glutamyl-tRNA reductase - 34 aom-kz---d--bcefghsn-j---w RimK [HJ] COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) - 13 a---k-y----lb-e--h--u----- ThiM [H] COG2145 Hydroxyethylthiazole kinase, sugar kinase family - 38 aompkzyqvdrlb-efghsnuj--t- ThiD [H] COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase - 16 -o--------rlbcefgh-------- MenF [HQ] COG1169 Isochorismate synthase - 29 -o--kzyqvdr-bcefg-snuj---- PanB [H] COG0413 Ketopantoate hydroxymethyltransferase - 25 ao--kzyq--rlb-efg----j---- ApbA [H] COG1893 Ketopantoate reductase - 26 -o---zyq-dr-bcefghsn-jxi-- LipA [H] COG0320 Lipoate synthase - 41 -o-pkzyqv--lbcefg------i-w LplA [H] COG0095 Lipoate-protein ligase A - 18 ------y--dr--cefghsn-jx--- LipB [H] COG0321 Lipoate-protein ligase B - 21 -------qvd-l--efghsn-j-it- ApbE [H] COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis - 4 aom----------------------- - [H] COG3252 Methenyltetrahydromethanopterin cyclohydrolase - 27 ---p--yqvdr-bcefghsnujxi-- UbiE [H] COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis - 9 -omp------r--c-f---------- ChlD [H] COG1240 Mg-chelatase subunit ChlD - 13 aomp-----dr--c-f---------- ChlI [H] COG1239 Mg-chelatase subunit ChlI - 28 aompkz-q-dr-bcefgh--uj---- MoaC [H] COG0315 Molybdenum cofactor biosynthesis enzyme - 28 aompkz-q-dr-bcefgh--uj---- MoaA [H] COG2896 Molybdenum cofactor biosynthesis enzyme - 42 aompkz-q-dr-bcefgh--uj---- MoeA [H] COG0303 Molybdopterin biosynthesis enzyme - 30 aompkz-q-dr-b-efgh--uj---- MoaB [H] COG0521 Molybdopterin biosynthesis enzymes - 28 aompkz-q-dr-bcefgh--uj---- MoaE [H] COG0314 Molybdopterin converting factor, large subunit - 33 ao-pk--q-dr-bcefgh--uj---- MoaD [H] COG1977 Molybdopterin converting factor, small subunit - 4 ---------------f-h---j---- MopI [H] COG3585 Molybdopterin-binding protein - 19 aompkz-q----b-e-gh--uj---- MobB [H] COG1763 Molybdopterin-guanine dinucleotide biosynthesis protein - 29 aompkz-q-dr-bcefgh-nuj---- MobA [H] COG0746 Molybdopterin-guanine dinucleotide biosynthesis protein A - 3 a-m----------------------- MtrH [H] COG1962 N5-methyl-tetrahydromethanopterin--coenzyme M methyltransferase - 40 aompkzyqvdrlbcefg-snuj--tw NadE [H] COG0171 NAD synthase - 28 a---kzyqvdrlb-efgh--uj---- SIR2 [H] COG0846 NAD-dependent protein deacetylases, SIR2 family - 21 aompkz---dr-bcefg----j---- CobT [H] COG2038 NaMN:DMB phosphoribosyltransferase - 20 aompkz---drl-ce--h-------- NadR [H] COG1056 Nicotinamide mononucleotide adenylyltransferase - 9 -----------l--ef-h--u----- PnuC [H] COG3201 Nicotinamide mononucleotide transporter - 31 aom-k-yqv-rlbcefghsnuj---- NadC [H] COG0157 Nicotinate-nucleotide pyrophosphorylase - 31 ------yqv-rlbcefg-snuj--tw NadD [H] COG1057 Nicotinic acid mononucleotide adenylyltransferase - 36 ao-pkzyqvdrlbcefghsnuj--tw PncB [H] COG1488 Nicotinic acid phosphoribosyltransferase - 61 ao-p-z--vdrlbcefgh---j---- DgoA [H] COG1441 O-succinylbenzoate synthase and related enzymes - 15 ----------rlb-e-gh---j---- CoaA [H] COG1072 Panthothenate kinase - 22 ------yqvdr-bcefg-snuj---- PanC [H] COG0414 Panthothenate synthetase - 27 -------qvdrlbcefghsnuj--t- CoaD [H] COG0669 Phosphopantetheine adenylyltransferase - 42 aompkzyqvdrlbcefghsnuj--t- Dfp [H] COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase - 5 -----------l--e-gh-------- CitX [HI] COG3697 Phosphoribosyl-dephospho-CoA transferase (holo-ACP synthetase) - 19 ------y---rlb-efghsnuj---- SerC [HE] COG1932 Phosphoserine aminotransferase - 8 --mp----vd--bc------------ - [HR] COG2045 Phosphosulfolactate phosphohydrolase and related enzymes - 3 --m----q----b------------- BioW [H] COG1424 Pimeloyl-CoA synthetase - 24 ao-p-zyq-dr-bcef--s--jx--- CyoE [H] COG0109 Polyprenyltransferase (cytochrome oxidase assembly factor) - 32 aomp-zyq-dr-bcefghsnujxi-- HemC [H] COG0181 Porphobilinogen deaminase - 12 aomp------r--c-f-----j---- CobH [H] COG2082 Precorrin isomerase - 11 aomp------r--c-f-----j---- CobF [H] COG2243 Precorrin-2 methylase - 11 aomp------r--c-f-----j---- CobJ [H] COG1010 Precorrin-3B methylase - 10 aomp------r--c-f-----j---- CobM [H] COG2875 Precorrin-4 methylase - 10 aomp------r--c-f-----j---- CobL [H] COG2241 Precorrin-6B methylase 1 - 11 aomp------r--c-f-----j---- CobL [H] COG2242 Precorrin-6B methylase 2 - 6 --m-------r--c-f-----j---- CobK [H] COG2099 Precorrin-6x reductase - 7 ----------rl--ef-h-------- NadR [H] COG3172 Predicted ATPase/kinase involved in NAD metabolism - 13 --------vd-lbc----------tw - [H] COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism - 20 aompkzy-vdr-b----h-------- PDX2 [H] COG0311 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis - 28 ---p--yq-drlbcefghsnujxi-- HemH [H] COG0276 Protoheme ferro-lyase (ferrochelatase) - 13 ao--k-yq-dr-b--------j-i-- HemY [H] COG1232 Protoporphyrinogen oxidase - 11 -o----yq--r--c-fg-s--j---- - [H] COG2154 Pterin-4a-carbinolamine dehydratase - 12 ------------b-e-gh-n-j---- AbgT [H] COG2978 Putative p-aminobenzoyl-glutamate transporter - 14 -------q-----cefg-snuj---- PdxJ [H] COG0854 Pyridoxal phosphate biosynthesis protein - 17 -------q----bcefghsnuj---- PdxA [H] COG1995 Pyridoxal phosphate biosynthesis protein - 14 ------y--d-l--ef-h---j--t- PdxK [H] COG2240 Pyridoxal/pyridoxine/pyridoxamine kinase - 17 ------y--dr--cefghsn-j---- PdxH [H] COG0259 Pyridoxamine phosphate oxidase - 20 aompkzy-vdr-b----h-------- SNZ1 [H] COG0214 Pyridoxine biosynthesis enzyme - 27 ------yqvdrlbcefghsnuj-i-- RibD [H] COG0117 Pyrimidine deaminase - 36 aom--zyqvdrlbcefghsnuj-i-- RibD [H] COG1985 Pyrimidine reductase, riboflavin biosynthesis - 25 aom-k--qv-r-bcefg-snuj---- NadA [H] COG0379 Quinolinate synthase - 28 -o----yqvdrlbcefghsnuj-i-- RibC [H] COG0307 Riboflavin synthase alpha chain - 34 aom--zyqvdrlbcefghsnuj-i-- RibH [H] COG0054 Riboflavin synthase beta-chain - 20 aompkzyqv-r--c-f--s--j---- SAM1 [H] COG0499 S-adenosylhomocysteine hydrolase - 33 ------yqvdrlbcefghsnuj--tw MetK [H] COG0192 S-adenosylmethionine synthetase - 24 aomp-zyq--r-b-efg-sn-j---- CysG [H] COG1648 Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) - 24 aompk--q-dr-bcefg-snuj---- ThiS [H] COG2104 Sulfur transfer protein involved in thiamine biosynthesis - 26 aompkz--v--lb-efgh------tw ThiI [H] COG0301 Thiamine biosynthesis ATP pyrophosphatase - 42 aomp-z-qvdr-bce-g---u--i-- ThiH [HR] COG1060 Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes - 24 aom-k--qvdr-bcefg-snuj---- ThiC [H] COG0422 Thiamine biosynthesis protein ThiC - 27 aompkz-q--r-bcefghsnuj---- ThiL [H] COG0611 Thiamine monophosphate kinase - 35 a--pk-yq-drlbcefghsnuj---- ThiE [H] COG0352 Thiamine monophosphate synthase - 10 ------y-vd-lb-------uj--t- THI80 [H] COG1564 Thiamine pyrophosphokinase - 12 a-m-kz-----l--efgh-------- CitG [H] COG1767 Triphosphoribosyl-dephospho-CoA synthetase - 5 ------y--------f--s--jx--- CAT5 [H] COG2941 Ubiquinone biosynthesis protein COQ7 - 8 --------------efgh-n------ HemY [H] COG3071 Uncharacterized enzyme of heme biosynthesis - 26 ---p--yq-dr-bcefghsnujxi-- HemE [H] COG0407 Uroporphyrinogen-III decarboxylase - 38 aomp-zyq-dr-bcefg-sn-j---- CysG [H] COG0007 Uroporphyrinogen-III methylase - 34 aomp--yq-dr-bcefghsnu-xi-- HemD [H] COG1587 Uroporphyrinogen-III synthase - 38 ------yqvdrlbcefghsnujxi-- FabD [I] COG0331 (acyl-carrier-protein) S-malonyltransferase - 78 ------yqvdrlbcefghsnujxitw PlsC [I] COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase - 25 -------qvdr-bcefghsnuj-it- Dxr [I] COG0743 1-deoxy-D-xylulose 5-phosphate reductoisomerase - 28 -------qvdr-bcefghsnuj-itw IspF [I] COG0245 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase - 58 ao-p-z---dr-b-efg----jx--- FadB [I] COG1250 3-Hydroxyacyl-CoA dehydrogenase - 16 aompkzy----lb--------j--t- PksG [I] COG3425 3-hydroxy-3-methylglutaryl CoA synthase - 39 --mp-z-q-drlbcefgh-nuj---- MmsB [I] COG2084 3-hydroxyisobutyrate dehydrogenase and related proteins - 41 -------qvd-lbcefghsnujxi-- FabA [I] COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases - 57 ------yqvdrlbcefghsnujxi-- FabB [IQ] COG0304 3-oxoacyl-(acyl-carrier-protein) synthase - 41 -------q-drlbcefghsnujxi-- FabH [I] COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III - 29 ----k--qvdr-bcefghsnuj-itw IspD [I] COG1211 4-diphosphocytidyl-2-methyl-D-erithritol synthase - 26 -------qvdr-bcefghsnuj-itw IspE [I] COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase - 19 ------y---r--ce--h-nuj---- SbmA [I] COG1133 ABC-type long-chain fatty acid transport system, fused permease and ATPase components - 116 aompkzy--drlbcefgh--ujx-t- PaaJ [I] COG0183 Acetyl-CoA acetyltransferases - 58 ao--k-yqvdrlbcefghsnujxi-- AccA [I] COG0825 Acetyl-CoA carboxylase alpha subunit - 58 ao--k-yqvdrlbcefghsnujxi-- AccD [I] COG0777 Acetyl-CoA carboxylase beta subunit - 9 a-m----qv--l--e----------- - [I] COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) - 27 ao-p-z---drlb-ef-h--uj---- AtoD [I] COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit - 26 -o-p-z---drlb-ef-h--uj---- AtoA [I] COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit - 60 ------yqvdrlbcefghsnujxitw AcpP [IQ] COG0236 Acyl carrier protein - 16 -----------lb-ef-h---j---w AcpD [I] COG1182 Acyl carrier protein phosphodiesterase - 182 ao-p-zy--dr-b-efg--n-j---- CaiA [I] COG1960 Acyl-CoA dehydrogenases - 33 -o-p-z---d--b-efgh-nuj-i-- - [I] COG1607 Acyl-CoA hydrolase - 163 aomp-zy--drlbcefghsnujxi-- CaiC [IQ] COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II - 15 ------y---r---efghs--j---- TesB [I] COG1946 Acyl-CoA thioesterase - 62 aomp-zyq-dr-bcefghs-uj---- Acs [I] COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases - 59 ao--k-yqvdrlbcefghsnujxit- AccB [I] COG0511 Biotin carboxyl carrier protein - 68 aom---yq-drlbcefghsnujxit- AccC [I] COG0439 Biotin carboxylase - 6 ----------r---e-----u----- Cdh [I] COG2134 CDP-diacylglycerol pyrophosphatase - 47 aompkzyqvdrlbcefghsnujxitw CdsA [I] COG0575 CDP-diglyceride synthetase - 7 ---------dr-b--------j---- PnbA [I] COG2272 Carboxylesterase type B - 16 a-mpk-yq-----c--------x-t- SEC59 [I] COG0170 Dolichol kinase - 147 ao-p-zyq-drlb-efg-s--jx--- CaiD [I] COG1024 Enoyl-CoA hydratase/carnithine racemase - 25 -------q-drlbcef-h-nujxi-- FabI [I] COG0623 Enoyl-[acyl-carrier-protein] reductase (NADH) - 52 a--p--y-vdrlbcefg-s--j--t- Aes [I] COG0657 Esterase/lipase - 16 ----------r-bc-f-----j---- DesA [I] COG3239 Fatty acid desaturase - 25 -------qvd-lbcefgh-nuj-i-w PlsX [I] COG0416 Fatty acid/phospholipid biosynthesis enzyme - 4 ------y------c-f------x--- OLE1 [I] COG1398 Fatty-acid desaturase - 10 ----------r---efghs------- PlsB [I] COG2937 Glycerol-3-phosphate O-acyltransferase - 15 aompkzy----l----g-------t- HMG1 [I] COG1257 Hydroxymethylglutaryl-CoA reductase - 5 -o----y---r---e----------- Idi [I] COG1443 Isopentenyldiphosphate isomerase - 23 ao---zyq--r--c-fgh------t- FAA1 [I] COG1022 Long-chain acyl-CoA synthetases (AMP-forming) - 19 -------q------efghsnuj---- FadL [I] COG2067 Long-chain fatty acid transport protein - 28 a---k-y-vdrlb-efgh---j---- PldB [I] COG2267 Lysophospholipase - 66 -om-k-yq-drlbcefghs-ujx-t- PgpB [I] COG0671 Membrane-associated phospholipid phosphatase - 24 ao-pkz---dr-b-e------j---- Sbm [I] COG2185 Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) - 25 ao-pkz---dr-b-e------j---- Sbm [I] COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit - 13 aom-kzy----l------------t- ERG12 [I] COG1577 Mevalonate kinase - 11 -o-p--y----l------------t- MVD1 [I] COG3407 Mevalonate pyrophosphate decarboxylase - 11 a-m-kzyqv-r--------------- INO1 [I] COG1260 Myo-inositol-1-phosphate synthase - 17 ------y---r---efghsn-jx--- - [I] COG2867 Oligoketide cyclase/lipid transport protein - 27 -------qvdr-bcefghsnuj-it- LytB [IM] COG0761 Penicillin tolerance protein - 15 -------q-dr-bcefg----j---- PspA [I] COG1842 Phage shock protein A (IM30), suppresses sigma54-dependent transcription - 23 --m-kz-q---lb-efgh-nu-x--- PgpA [I] COG1267 Phosphatidlglycerophosphatase A and related proteins - 69 aompkzyqv-rlbcefghsnujxitw PgsA [I] COG0558 Phosphatidylglycerophosphate synthase - 28 aom---y--dr-b-efghsnujxi-- Psd [I] COG0688 Phosphatidylserine decarboxylase - 23 aom---y---r-b--f--snujxit- PssA [I] COG1183 Phosphatidylserine synthase - 60 a--p--y-v--lbcefghsnujxi-w Cls [I] COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes - 5 ---------------fghs------- - [I] COG3240 Phospholipase/lecithinase/hemolysin - 31 ------yqvdrlb-e-g--nujxitw AcpS [I] COG0736 Phosphopantetheinyl transferase (holo-ACP synthase) - 17 -om---y--dr-bc-----n-j---- ERG9 [I] COG1562 Phytoene/squalene synthetase - 6 ---------------fg----jx--- PhaC [I] COG3243 Poly(3-hydroxyalkanoate) synthetase - 6 a---------r--c--------x--- - [I] COG1870 Poly-beta-hydroxyalkanoate (PHB) synthetases - 45 ao----y--dr-b-efg----j---- MaoC [I] COG2030 Predicted acyl dehydratase - 49 ----------rlb-ef-hsn-j---- - [I] COG1835 Predicted acyltransferases - 3 ------y------c--g--------- - [I] COG3675 Predicted lipase - 4 --------------efg--------- - [I] COG3154 Putative lipid carrier protein - 14 a--p-z-q----b--f-----j---- - [I] COG3255 Putative sterol carrier protein - 9 a----z-----lb-ef-h--u----- AtoE [I] COG2031 Short chain fatty acids transporter - 3 ------y-----bc------------ SqhC [I] COG1657 Squalene cyclase - 17 ------y---r--c-fg----j---- ERG3 [I] COG3000 Sterol desaturase - 46 aompkzyqvdrlbcefghsnujxit- UppS [I] COG0020 Undecaprenyl pyrophosphate synthase - 51 aompkzy--dr-bcefgh-nuj---- MhpD [Q] COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) - 19 -----------lbcefg-sn-j---w SunT [Q] COG2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain - 211 aompkzy-vdrlbcefghsnujx-tw CcmA [Q] COG1131 ABC-type multidrug transport system, ATPase component - 188 -o--k-yqvdrlbcefghsnujxi-w MdlB [Q] COG1132 ABC-type multidrug/protein/lipid transport system, ATPase component - 5 --------v---b--------j---- - [Q] COG3458 Acetyl esterase (deacetylase) - 7 ------y---r---efg----j---- - [Q] COG2015 Alkyl sulfatase and related hydrolases - 4 -----------lb---g--------- AlsD [Q] COG3527 Alpha-acetolactate decarboxylase - 68 ao-pkzyqv-rlb-efg-snuj--t- PncA [Q] COG1335 Amidases related to nicotinamidase - 6 ---------d--b-------u----- - [Q] COG2746 Aminoglycoside N3'-acetyltransferase - 9 a--------d--b--f-h-------- - [Q] COG2368 Aromatic ring hydroxylase - 6 ----------r-b-efg--------- - [Q] COG3433 Aryl carrier domain - 10 ----------r-b-ef-----j---- NhoA [Q] COG2162 Arylamine N-acetyltransferase - 73 -------qvd--bcefghsnujx-t- AcrB [Q] COG0841 Cation/multidrug efflux pump - 4 ----------r--c-------j---- CmcI [Q] COG3510 Cephalosporin hydroxylase - 3 ---------d----e------j---- TynA [Q] COG3733 Cu2+-containing amine oxidase - 60 -o----y--dr-bc-f--s-uj---- CypX [Q] COG2124 Cytochrome P450 - 448 ao-pkzyqvdrlbcefghsnujxi-- FabG [QR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) - 25 ---p--yq--r-bcef-----j---- - [Q] COG0412 Dienelactone hydrolase and related enzymes - 4 ------------b-ef---------- - [Q] COG3435 Gentisate 1,2-dioxygenase - 4 ---------------fg----j---- HmgA [Q] COG3508 Homogentisate 1,2-dioxygenase - 29 aompk-y-vdrlb--fg----j---- HutI [Q] COG1228 Imidazolonepropionase and related amidohydrolases - 7 --------v---b-efg--------- EntB [Q] COG1535 Isochorismate hydrolase - 6 ----------r--c-------j---- - [Q] COG3670 Lignostilbene-alpha,beta-dioxygenase and related enzymes - 4 -o----------b--f-----j---- IucD [Q] COG3486 Lysine/ornithine N-monooxygenase - 5 ----kz---------------j---- - [Q] COG3473 Maleate cis-trans isomerase - 140 -------qvd-lbcefghsnujx-t- AcrA [Q] COG0845 Membrane-fusion protein - 36 -------q----b-efgh-n-jx--- EmrA [Q] COG1566 Multidrug resistance efflux pump - 3 ----k-----r----------j---- - [Q] COG3653 N-acyl-D-aspartate/D-glutamate deacylase - 79 aom-kzyqvdrlbcefghsnuj--tw NorM [Q] COG0534 Na+-driven multidrug efflux pump - 68 ------y---rlb-efg-s-uj---- EntF [Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins - 24 ----------r-b--fgh---j---- - [Q] COG3315 O-Methyltransferase involved in polyketide biosynthesis - 6 ----------r-b-efg--------- EntE [Q] COG1021 Peptide arylation enzymes - 3 -----------lb---g--------- - [Q] COG3479 Phenolic acid decarboxylase - 9 ------y-----bce--hs------- Sfp [Q] COG2091 Phosphopantetheinyl transferase - 7 ----------r---efg----j---- EntD [Q] COG2977 Phosphopantetheinyl transferase component of siderophore synthetase - 26 -om--z---dr-bc-------j---- - [Q] COG1233 Phytoene dehydrogenase and related proteins - 6 ----------r----f-----j---- LpqC [Q] COG3509 Poly(3-hydroxybutyrate) depolymerase - 47 ----------r-b--------j---- - [Q] COG3321 Polyketide synthase modules and related proteins - 8 -o-------d--b---g-s--j---- FrnE [Q] COG2761 Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis - 7 ---------dr-b------------- BcsA [Q] COG3424 Predicted naringenin-chalcone synthase - 10 ----------r-b--f-----j---- GrsT [Q] COG3208 Predicted thioesterase involved in non-ribosomal peptide biosynthesis - 16 ------y---r---efg----j---- TauD [Q] COG2175 Probable taurine catabolism dioxygenase - 8 ---------------f-----jx--- PcaH [Q] COG3485 Protocatechuate 3,4-dioxygenase beta subunit - 5 ------y---r----f---------- - [Q] COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes synthetases - 27 -o----yq--r-b-ef-hsnuj---- SufI [Q] COG2132 Putative multicopper oxidases - 3 ------y--------fg--------- DIT1 [Q] COG3207 Pyoverdine/dityrosine biosynthesis protein - 21 -------q-----c-fg-sn-j---- - [Q] COG2931 RTX toxins and related Ca2+-binding proteins - 484 aompkzyqvdrlbcefghsnujxitw SmtA [QR] COG0500 SAM-dependent methyltransferases - 3 ---------d-----f-----j---- StrB [Q] COG3570 Streptomycin 6-kinase - 13 ----------r-b-ef-----j---- - [Q] COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases - 8 ------------b-efg----j---- AcoR [Q] COG3284 Transcriptional activator of acetoin/glycerol metabolism - 5 --------vd----e------j---- IndA [Q] COG2313 Uncharacterized enzyme involved in pigment biosynthesis - 3 ---------d--b-e----------- - [Q] COG3460 Uncharacterized enzyme of phenylacetate metabolism - 7 ---------d----efg----j---- BenE [Q] COG3135 Uncharacterized protein involved in benzoate metabolism - 54 ao-pk--q-drlb-efgh--uj---- PaaI [Q] COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism - 6 ----k---v-r--c------------ - [R] COG2251 "Predicted RecB family nuclease (associated with helicases in Pyrococcus and Mtub) - 23 -------qvd---cefghsnujxit- - [R] COG1137 ABC-type (unclassified) transport system, ATPase component - 114 aompkzy-vdrlbcefghs-uj---- - [R] COG0842 ABC-type multidrug transport system, permease component - 32 -------q--r--cefghsnujx--- - [R] COG0767 ABC-type toluene export system, permease component - 33 ao-pkz--vd--bc-f--------tw NosY [R] COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component - 123 aom--z-qvdrlbcefghsnujxitw PhnL [R] COG1136 ABC-type transport systems, involved in lipoprotein release, ATPase components - 104 aom----qvdrlbcefghsnujxit- - [R] COG0577 ABC-type transport systems, involved in lipoprotein release, permease components - 22 ao--kz--vd-lb--f-----j--tw - [R] COG3845 ABC-type uncharacterized transport systems, ATPase components - 33 ---------d-lb-efghsnuj-it- NlpA [R] COG1464 ABC-type uncharacterized transport systems, periplasmic component - 3 a-m----------------------- - [R] COG1707 ACT domain-containing protein - 7 --------vd-lb------------- - [R] COG2344 AT-rich DNA-binding protein - 8 a-m-k--------------------- - [R] COG1759 ATP-utilizing enzymes of ATP-grasp superfamily (probably carboligases) - 7 a-m-----v----c------------ - [R] COG1606 ATP-utilizing enzymes of the PP-loop superfamily - 88 ------y--drlbcefghsnujxit- Uup [R] COG0488 ATPase components of ABC transporters with duplicated ATPase domains - 38 -omp------r--cefg---uj---- - [R] COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase - 14 aompkz---d-lbc------------ - [R] COG1855 ATPases of the PilT family - 57 aompkzyqvdrlbcefghsnuj---w RimI [R] COG0456 Acetyltransferases - 59 -om-k-y-vdrlbcefgh-nuj-i-- WbbJ [R] COG0110 Acetyltransferases (the isoleucine patch superfamily) - 4 -----------l--e--h-------- AphA [R] COG3700 Acid phosphatase (class B) - 5 --------------e-gh-------- - [R] COG3445 Acid-induced glycyl radical enzyme - 48 -o-pkzy-v-rlbcefg----j---- ARA1 [R] COG0656 Aldo/keto reductases, related to diketogulonate reductase - 14 --------------e-gh--u----- DcuB [R] COG2704 Anaerobic C4-dicarboxylate transporter - 51 ---p--y--d---cefghsnujx-t- Arp [R] COG0666 Ankyrin repeat proteins - 4 a-m----------------------- - [R] COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes - 9 aompkz-------------------- - [R] COG1938 Archaeal enzymes of ATP-grasp superfamily - 6 a-m-kz-------------------- - [R] COG1750 Archaeal serine proteases - 13 --m-----v----ce--h-------- AslB [R] COG0641 Arylsulfatase regulator (Fe-S oxidoreductase) - 14 --------v----cef-h---j--t- - [R] COG1512 Beta-propeller domains of methanol dehydrogenase type - 18 ao-------dr--cefgh-nu----- Pta [R] COG0857 BioD-like N-terminal domain of phosphotransacetylase - 4 ----k--qv----------------- - [R] COG2516 Biotin synthase-related enzyme - 9 a-mpkzy------------------- - [R] COG1779 C4-type Zn finger - 202 aompkzyqvdrlbcefghsnujxit- - [R] COG0517 CBS domains - 34 --mpk--q-dr-bcefg-snujx--- PaaY [R] COG0663 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily - 43 a-mpkz-qvdrlbcef-h-n-jx--- - [R] COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family - 9 -------q------e--h---j---- DmsC [R] COG3302 DMSO reductase anchor subunit - 10 aompkzy------------------- - [R] COG2118 DNA-binding protein - 10 --------------e-ghs------- Hns [R] COG2916 DNA-binding protein H-NS - 5 -om----------c--g----j---- - [R] COG3046 Deoxyribodipyrimidine photolyase-related proteins - 29 a-----yqvdrlb--f--snuj---- - [R] COG2070 Dioxygenases related to 2-nitropropane dioxygenase - 14 a-m-k-y--dr-b-e----------- - [R] COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster - 79 aompkzyqvdrlbcefghsnujxitw ARC1 [R] COG0073 EMAP domain - 22 -----z-qv---bcefghsnujx--- - [R] COG0780 Enzyme related to GTP cyclohydrolase I - 7 -o-------dr-b--------j---- - [R] COG2312 Erythromycin esterase homolog - 4 --------v---b-----------t- - [R] COG1647 Esterase/lipase - 37 aom-kz-qvdrlbc--g-------tw - [R] COG0618 Exopolyphosphatase-related proteins - 8 ------------b-------u----- - [R] COG3401 Fibronectin type 3 domain-containing protein - 9 aom-kzy-v----------------- - [R] COG1635 Flavoproteins, possibly involved in thiazole biosynthesis - 59 aompkzyq-d---c-------j---- - [R] COG1100 GTPases - 31 -------qvdrlbcefghsnujx-tw Era [R] COG1159 GTPases - 28 -om-kz-qvdrlbcefghsn-j-i-- HflX [R] COG2262 GTPases - 7 ------------b-ef-----j---- GsiB [R] COG3729 General stress protein - 23 aompkz-qv--lb------------w - [R] COG1078 HD superfamily phosphohydrolases - 10 ---------dr-bc------uj---- - [R] COG2346 Hemoglobin-like proteins - 12 --------------efg----j--t- Hcp [R] COG3157 Hemolysin-coregulated protein (uncharacterized) - 16 aomp-z-q-dr-b--------j-i-- - [R] COG1331 Highly conserved protein containing a thioredoxin domain - 49 ao--kzy-vdrlb-efg-s--j-i-- - [R] COG1073 Hydrolases of the alpha/beta superfamily - 27 ------y--d-lbcefgh-nujxit- - [R] COG0670 Integral membrane protein, interacts with FtsH - 28 aompkz--vdrlbce---s--j-it- - [R] COG0396 Iron-regulated ABC transporter ATPase subunit SufC - 7 ---------------f----uj---- PcbC [R] COG3491 Isopenicillin N synthase and related dioxygenases - 12 -o-------dr-b--f-----j---- - [R] COG3631 Ketosteroid isomerase-related protein - 13 --------vd----ef-hs--jx--- - [R] COG2373 Large extracellular alpha-helical protein - 23 aompkz----r---ef-----j---- Lhr [R] COG1201 Lhr-like helicases - 11 ----------r-b-efgh--u----- - [R] COG1279 Lysine efflux permease - 59 aompk---vd-lb-efghsn-j---- RfbX [R] COG2244 Membrane protein involved in the export of O-antigen and teichoic acid - 42 -o-pk---vdrlbcef-h--uj---- AbgB [R] COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase - 7 --------------ef--s--j---- ElsH [R] COG3568 Metal-dependent hydrolase - 32 aompk--q---lbcef-----jxit- PhnP [R] COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I - 11 a-m-k---v----------------- - [R] COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II - 38 aompkzy-vdrlbce--h---j-it- ElaC [R] COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III - 70 aompkzyqvdr-bcefg-s--j--t- - [R] COG0714 MoxR-like ATPases - 28 a-m---yq-dr-b-efg-s--j---- WrbA [R] COG0655 Multimeric flavodoxin WrbA - 10 a-m-----------ef-h--uj---- ModE [R] COG2005 N-terminal domain of molybdenum-binding protein - 5 a-m-----v----c------------ - [R] COG1691 NCAIR mutase (PurE)-related proteins - 34 aom-k--q----b---gh-nu--it- - [R] COG0733 Na+-dependent transporters of the SNF family - 6 --------------efgh-------- - [R] COG3081 Nucleoid-associated protein - 11 a-m-kz-----lb---g--------- - [R] COG3291 PKD repeat proteins - 11 --------------efgh-n------ PqiB [R] COG3008 Paraquat-inducible protein B - 3 ------------b---g-----x--- - [R] COG3621 Patatin - 8 -----------lb------------w PrfA [R] COG3331 Penicillin-binding protein-related factor A, putative recombinase - 53 -------q--r--cefghsnujx--- - [R] COG1463 Permease component of an ABC-transporter - 22 ---------d-lb-efghsnuj-it- - [R] COG2011 Permease component of an uncharacterized ABC transporter - 38 -om-k---vd-lb-efgh-nuj--t- - [R] COG2252 Permeases - 8 ------yq--r-b--------j---- - [R] COG2270 Permeases of the major facilitator superfamily - 4 ---------------f--s--j---- - [R] COG3628 Phage baseplate assembly protein W - 7 ----------rl--e------j---- - [R] COG3740 Phage head maturation protease - 4 --------------ef--s------- - [R] COG3500 Phage protein D - 4 --------------ef--s------- - [R] COG3499 Phage protein U - 5 --------------ef--s--j---- - [R] COG3497 Phage tail sheath protein FI - 4 --------------ef--s------- - [R] COG3498 Phage tail tube protein FII - 4 ------------b----h------t- XtmB [R] COG1783 Phage terminase large subunit - 23 --------------e---s--j---- - [R] COG3772 Phage-related lysozyme (muraminidase) - 29 aompk-yq--r-b-e-ghsnuj-i-w - [R] COG1881 Phospholipid-binding protein - 19 ---p------r--cefgh---j---- - [R] COG1741 Pirin-related protein - 4 ----kz--v----------------- - [R] COG2446 Predicted ABC-type transport system, periplasmic component - 3 a-m----------------------- - [R] COG2232 Predicted ATP-dependent carboligases related to biotin carboxylase - 3 a-m----------------------- - [R] COG1821 Predicted ATP-utilizing enzymes of ATP-grasp superfamily - 39 aompkz-qvdrlbcef-h---j---- - [R] COG0433 Predicted ATPase - 15 ------y--dr---efg-sn-jx--- - [R] COG1485 Predicted ATPase - 6 --m-----------ef----u----- - [R] COG2603 Predicted ATPase - 6 --------------e-gh---j---- - [R] COG3106 Predicted ATPase - 7 -o--------rl--e---s------- - [R] COG3378 Predicted ATPase - 31 aompkz-q----bcefghsnujx--- - [R] COG0603 Predicted ATPase (PP-loop superfamily), confers aluminum resistance - 39 --m-k---v----------------- - [R] COG1672 Predicted ATPase of the AAA superfamily - 6 a---kz--v----------------- - [R] COG1483 Predicted ATPase of the AAA+ class - 8 -------q-----c-f---nuj---- - [R] COG2607 Predicted ATPase of the AAA+ class - 3 --m--z----------g--------- - [R] COG3044 Predicted ATPase of the ABC class - 29 -------qvdrlbcefghsnujxit- - [R] COG0802 Predicted ATPase or kinase - 7 --m-k---------------u----- - [R] COG1106 Predicted ATPases - 14 aompkzy------------------- - [R] COG2102 Predicted ATPases of PP-loop superfamily - 10 a-mpkz-qv----------------- - [R] COG1618 Predicted ATPases or kinases - 17 -o-pkz-qvd-lb-e-----uj---- - [R] COG1832 Predicted CoA-binding protein - 23 ao-p---------------------- - [R] COG3413 Predicted DNA binding domain - 4 --m---------b------------- - [R] COG3849 Predicted DNA binding protein - 11 aompkz-------------------- - [R] COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain - 6 a-m-k-----------g--------- - [R] COG1342 Predicted DNA-binding proteins - 11 aompkz--------e-g----j---- - [R] COG1661 Predicted DNA-binding proteins with PD1-like DNA-binding motif - 5 a-m-kz-------------------- - [R] COG2100 Predicted Fe-S oxidoreductase - 53 aompkz-qvdrlbc-f-----j---- - [R] COG0535 Predicted Fe-S oxidoreductases - 8 aompk--------------------- - [R] COG1244 Predicted Fe-S oxidoreductases - 10 a-mpkz----r--------------- - [R] COG1964 Predicted Fe-S oxidoreductases - 8 --------------efg----j---- - [R] COG3313 Predicted Fe-S protein - 3 --m-----v----------------- - [R] COG2000 Predicted Fe-S proteins - 28 aom-k----d-l-cef--s-uj---- - [R] COG0727 Predicted Fe-S-cluster oxidoreductase - 30 -------qvdrlbcefghsnuj--tw - [R] COG0820 Predicted Fe-S-cluster redox enzyme - 46 aompkzyqvdrlbcefghsnujxitw - [R] COG0012 Predicted GTPase - 32 ------yqvd-lbcefghsnujxitw ThdF [R] COG0486 Predicted GTPase - 34 ------yqvdrlbcefghsnujxitw Obg [R] COG0536 Predicted GTPase - 10 aompkzy------------------- - [R] COG1084 Predicted GTPase - 11 aompkzy------------------- - [R] COG1163 Predicted GTPase - 8 --m----q-dr--------n------ - [R] COG2229 Predicted GTPase - 10 -------------ce-g--nu----- - [R] COG3596 Predicted GTPase - 7 a-m-kzy------------------- - [R] COG1341 Predicted GTPase or GTP-binding protein - 31 aom-k-yqv--lb-efghsnujx--w - [R] COG0218 Predicted GTPases - 34 -------qvdrlbcefghsnujxitw - [R] COG1160 Predicted GTPases - 28 --m-kzy-v--lbc--g--n----tw - [R] COG1161 Predicted GTPases - 24 -------qv-rlbcefghsn-j--tw - [R] COG1162 Predicted GTPases - 24 ------y--dr-bcef----u----- - [R] COG0699 Predicted GTPases (dynamin-related) - 31 aompk--qvd-lb-e-----u---tw - [R] COG1418 Predicted HD superfamily hydrolase - 3 a-------vd---------------- - [R] COG2316 Predicted HD superfamily hydrolase - 3 --------------e------j---- - [R] COG3810 Predicted HD superfamily hydrolase - 6 --m--------lb------------- - [R] COG3481 Predicted HD-superfamily hydrolase - 15 aompkz---------------j---- - [R] COG1407 Predicted ICC-like phosphoesterases - 7 ----------r-----g--n-j---- - [R] COG2907 Predicted NAD/FAD-binding protein - 3 -o-----------c-f---------- - [R] COG3380 Predicted NAD/FAD-dependent oxidoreductase - 18 ------yq--r-bcef---n-j---- - [R] COG0385 Predicted Na+-dependent transporter - 8 ------------b-e-gh--u---t- - [R] COG1823 Predicted Na+/dicarboxylate symporter - 14 ao--kzy-------e-gh-------- - [R] COG1444 Predicted P-loop ATPase fused to an acetyltransferase - 16 ---------drlb-efghsn------ - [R] COG1660 Predicted P-loop-containing kinase - 16 -----------lb-efghsn-j--tw - [R] COG2183 Predicted RNA binding protein, contains S1 domain - 11 --------vdrlbc----------t- Jag [R] COG1847 Predicted RNA-binding protein - 19 -------qvdrlbc------u--it- - [R] COG1837 Predicted RNA-binding protein (KH domain) - 11 aompkzy------------------- - [R] COG1094 Predicted RNA-binding protein (contains KH domains) - 4 -----------lbc------------ - [R] COG3688 Predicted RNA-binding protein containing a PIN domain - 10 a-m-kzy------------------- - [R] COG1818 Predicted RNA-binding protein, contains THUMP domain - 3 a-m----------------------- - [R] COG1532 Predicted RNA-binding proteins - 11 aompkzy------------------- - [R] COG1537 Predicted RNA-binding proteins - 34 a--pk-yqvdrlb-efghsnuj-i-- - [R] COG1611 Predicted Rossmann fold nucleotide-binding protein - 33 ------yqvdrlbcefghsnujxitw - [R] COG0220 Predicted S-adenosylmethionine-dependent methyltransferase - 9 ---------d-lb---g--------w - [R] COG2384 Predicted SAM-dependent methyltransferase - 6 --------------ef-hs------- - [R] COG2933 Predicted SAM-dependent methyltransferase - 33 --m-kz-qvd-lb-efghsn-j-i-- - [R] COG1092 Predicted SAM-dependent methyltransferases - 4 --------------efg--------- - [R] COG3129 Predicted SAM-dependent methyltransferases - 9 aom-kz-------ce------j---- SgcQ [R] COG0434 Predicted TIM-barrel enzyme - 59 aom---yqvdrlbcefghsnujxit- - [R] COG0042 Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family - 40 aompkzy-vdrlbcefghs-uj---- - [R] COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold - 58 -----zyqvdrlbcefghs-ujx-t- PqqL [R] COG0612 Predicted Zn-dependent peptidases - 7 ------y--d-------------it- - [R] COG1026 Predicted Zn-dependent peptidases, insulinase-like - 5 --------vd--b------------- - [R] COG2738 Predicted Zn-dependent protease - 9 aom-kz-q------------------ - [R] COG1913 Predicted Zn-dependent proteases - 65 a-mpkz-qvdr-bcefghsn-j---- TldD [R] COG0312 Predicted Zn-dependent proteases and their inactivated homologs - 11 a----z---d-l--efgh---j---- - [R] COG2388 Predicted acetyltransferase - 11 -----------l--efg----j---- - [R] COG3153 Predicted acetyltransferase - 3 ----------r-b-----------t- - [R] COG3393 Predicted acetyltransferase - 3 ------------------s--j---- - [R] COG3818 Predicted acetyltransferase, GNAT superfamily - 21 a-----y--d--bc-fg-s------w LipA [R] COG1075 Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold - 10 ----------rl-c----s--j---- - [R] COG2936 Predicted acyl esterases - 8 ----------rlbcefg--------- ElaA [R] COG2153 Predicted acyltransferases - 10 a-mpkz-qv----------------- - [R] COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) - 77 aompkzyqvdr-bcefg-snuj--t- - [R] COG0388 Predicted amidohydrolase - 26 -------qvdrlbcefghsnuj--t- ComFC [R] COG1040 Predicted amidophosphoribosyltransferases - 11 -o-------dr-b--f-----j---- - [R] COG3173 Predicted aminoglycoside phosphotransferase - 19 ------yq-dr--cefghsn-jx--- - [R] COG0354 Predicted aminomethyltransferase related to GcvT - 29 aom-k-yq--r-b-efg-s--j---- Iap [R] COG2234 Predicted aminopeptidases - 9 aompkz-------------------- - [R] COG1608 Predicted archaeal kinases - 7 aom-kz-------------------- - [R] COG1829 Predicted archaeal kinases of the sugar kinase superfamily - 5 --m-kz------------s------- - [R] COG2521 Predicted archaeal methyltransferase - 9 a-m-kz-------------------- - [R] COG1907 Predicted archaeal sugar kinases - 6 ---------------f-----jx--- - [R] COG3577 Predicted aspartyl protease - 3 ---------d-----f-h-------- - [R] COG3179 Predicted chitinase - 5 --m-k-----r----f---------- - [R] COG3233 Predicted deacetylase - 5 -o--------------g----j---- - [R] COG3608 Predicted deacylase - 27 a--pkz--v-r-bcefg-snuj---w - [R] COG0579 Predicted dehydrogenase - 99 --mpk-yqvd-lbcefgh--uj---- MviM [R] COG0673 Predicted dehydrogenases and related proteins - 10 aom--------l------s--j---- - [R] COG2085 Predicted dinucleotide-binding enzymes - 5 a-m-----v------f---------- - [R] COG1712 Predicted dinucleotide-utilizing enzyme - 13 a-mpkzyqv------------j---- - [R] COG1355 Predicted dioxygenase - 3 -------------c-f-----j---- - [R] COG3565 Predicted dioxygenase of extradiol dioxygenase family - 16 --m------------f---nu----- - [R] COG3271 Predicted double-glycine peptidase - 3 ------y-v---b------------- - [R] COG3341 Predicted double-stranded RNA/RNA-DNA hybrid binding protein - 25 ---p-z---dr-b------------- - [R] COG2409 Predicted drug exporters of the RND superfamily - 13 --------v------f-----j---- - [R] COG3450 Predicted enzyme of the cupin superfamily - 12 ----------r-b--fgh---j---- - [R] COG3324 Predicted enzyme related to lactoylglutathione lyase - 26 ------yqvdrlbcefghsnuj---- - [R] COG0325 Predicted enzyme with a TIM-barrel fold - 24 -o----y--dr-bcefgh---j---- - [R] COG0384 Predicted epimerase, PhzC/PhzF homolog - 15 ------y--d-lbcef--s--jxi-- - [R] COG0400 Predicted esterase - 24 ------y---rl-cef-h-n-j---- - [R] COG0627 Predicted esterase - 8 --------------efgh-------- - [R] COG3150 Predicted esterase - 40 ------yqv-rlbcefghsn-jx-t- RssA [R] COG1752 Predicted esterase of the alpha-beta hydrolase superfamily - 7 ---------d--b--f-----j---- - [R] COG3545 Predicted esterase of the alpha/beta hydrolase fold - 13 aom-k---v---b--f----u---t- - [R] COG1033 Predicted exporters of the RND superfamily - 6 ---------d-l-c-fg-------t- - [R] COG2374 Predicted extracellular nuclease - 15 -omp------rlb------n-j---- - [R] COG3467 Predicted flavin-nucleotide-binding protein - 11 --m------drl---f-----j---- - [R] COG3576 Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase - 34 -o----y--drlbcefgh-n-j---w - [R] COG0431 Predicted flavoprotein - 14 -----------lbcefgh---j---- - [R] COG2081 Predicted flavoproteins - 21 --mpk-y---r--cefgh-n-j---- - [R] COG0121 Predicted glutamine amidotransferase - 5 ----------rl-c------------ - [R] COG3442 Predicted glutamine amidotransferase - 13 ----------rl--ef----ujx--- - [R] COG2071 Predicted glutamine amidotransferases - 23 a-m-kz---dr--cef--s--j---- - [R] COG1216 Predicted glycosyltransferases - 17 a-m-kz-qv--lb-e--h-------- - [R] COG1203 Predicted helicases - 15 aompkzyq------------------ - [R] COG1204 Predicted helicases - 12 --m----q-----c------------ - [R] COG1719 Predicted hydrocarbon binding protein (contains V4R domain) - 7 --------------efgh-------- - [R] COG3083 Predicted hydrolase of alkaline phosphatase superfamily - 8 ------y-vd-lbc------------ - [R] COG2179 Predicted hydrolase of the HAD superfamily - 10 a-mpk--qv-r-b------------- - [R] COG1353 Predicted hydrolase of the HD superfamily (permuted catalytic motifs) - 8 ---------d--b-ef---nuj---- - [R] COG2819 Predicted hydrolase of the alpha/beta superfamily - 9 ao-------------f--sn-jx--- - [R] COG2945 Predicted hydrolase of the alpha/beta superfamily - 10 ------y------cefg--n------ - [R] COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold - 3 ----------r----f-----j---- - [R] COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold - 33 -om-k---vdrlbc------ujx--w - [R] COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily - 5 a-m-kz-------------------- - [R] COG2248 Predicted hydrolase of the metallo-beta-lactamase superfamily - 16 ao--kzy--d----efgh--u----- - [R] COG1896 Predicted hydrolases of HD superfamily - 17 -o-------d-lb-efghsn------ ComEC [R] COG2333 Predicted hydrolases of metallo-beta-lactamase fold - 89 aompkzy-vdrlbce-gh-n-j-itw Cof [R] COG0561 Predicted hydrolases of the HAD superfamily - 82 -ompk-yqvdrlb-efghsn-j--t- - [R] COG1011 Predicted hydrolases of the HAD superfamily - 5 ----kz--------e----------- - [R] COG3769 Predicted hydrolases of the HAD superfamily - 257 ao-p-zyq-drlbcefghsnujx-tw MhpC [R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) - 33 aom-k--qv-r-bcef--s--j---w - [R] COG0392 Predicted integral membrane protein - 46 aompkzyqv-rlbcefghsnujx-tw - [R] COG0061 Predicted kinase - 11 -o-----q-dr--c-f-----j---- - [R] COG0645 Predicted kinase - 29 ---p--y-vdrlbcef-----j---- BmrU [R] COG1597 Predicted kinase related to diacylglycerol kinase - 12 --------vdrlb------------w - [R] COG1461 Predicted kinase related to dihydroxyacetone kinase - 7 ---p------r--c------u----- - [R] COG2605 Predicted kinase related to galactokinase and mevalonate kinase - 18 a-m---yqvdrlbc-f---n-j---- ArgJ [R] COG1364 Predicted kinase related to thiamine pyrophosphokinase - 3 -----------lb--------j---- - [R] COG3607 Predicted lactoylglutathione lyase - 51 aompkz--vdrlbce---s--j-it- - [R] COG0719 Predicted membrane components of an uncharacterized iron-regulated ABC-type transporter SufB - 10 --mp--y-------e-gh-------- - [R] COG1584 Predicted membrane protein - 4 -----------lb-----------t- PfoR [R] COG3641 Predicted membrane protein, putative toxin regulator - 21 ------y--drlb-efg-sn-j--t- - [R] COG1272 Predicted membrane proteins, hemolysin III homologs - 6 --------v---bc---------it- - [R] COG1480 Predicted membrane-associated HD superfamily hydrolase - 33 ----k---------efghsnu-x--- - [R] COG2194 Predicted membrane-associated, metal-dependent hydrolase - 13 a-m-k-------b-ef---------- - [R] COG1988 Predicted membrane-bound metal-dependent hydrolases - 10 ------------b-efg--n---i-- - [R] COG3318 Predicted metal-binding protein related to the C-terminal domain of SecA - 17 -------qvdr-bcefghsn------ - [R] COG1399 Predicted metal-binding, possibly nucleic acid-binding protein - 9 aompkz-------------------- - [R] COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain - 33 -------qvdrlbcefghsnujxitw - [R] COG0319 Predicted metal-dependent hydrolase - 28 aom-k--q-d----efg-snuj---w - [R] COG1451 Predicted metal-dependent hydrolase - 5 ----------r----f-----j---- - [R] COG3687 Predicted metal-dependent hydrolase - 11 -o--kz----r--c-------j---- - [R] COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold - 5 ---------------f----uj---- - [R] COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold - 17 -o-pkz-qvdr-b--f-----j---- - [R] COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold - 7 ---------dr-b-e------j---w Php [R] COG1735 Predicted metal-dependent hydrolase with the TIM-barrel fold - 9 aompkz-------------------- - [R] COG1831 Predicted metal-dependent hydrolases of the urease superfamily - 18 ---pkzy-vd--b--fg----j---- - [R] COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain - 4 a-m----------------------- - [R] COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold - 48 -om-kz-qvdrlbcefg----j-it- - [R] COG1266 Predicted metal-dependent membrane protease - 24 aom--z-qvd--bcefgh-n------ - [R] COG0613 Predicted metal-dependent phosphoesterases (PHP family) - 22 --mpkz--vdrlb-e---s--j---- PaaD [R] COG2151 Predicted metal-sulfur cluster biosynthetic enzyme - 9 ---------drl--ef-h---j---- - [R] COG2321 Predicted metalloprotease - 22 aompkzy------------------- - [R] COG2520 Predicted methyltransferase - 35 -------qvdrlbcefghsnujxitw - [R] COG0313 Predicted methyltransferases - 6 a-m-k--q------------------ - [R] COG1568 Predicted methyltransferases - 35 -------q-drlbcefghsnujxi-- Rbn [R] COG1295 Predicted multitransmembrane protein - 30 -------qvdrlbcefghsnuj-itw ComEC [R] COG0658 Predicted multitransmembrane, metal-binding protein - 6 ao----y------------------- - [R] COG3582 Predicted nucleic acid binding protein containing the AN1-type Zn-finger - 10 aompkzy------------------- - [R] COG1439 Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module - 4 a------qv---b------------- - [R] COG1367 Predicted nucleic acid-binding protein, contains PIN domain - 34 a-m-k----dr--c---hs--j---- VapC [R] COG1487 Predicted nucleic acid-binding protein, contains PIN domain - 8 a-m-k--------c----s------- - [R] COG1569 Predicted nucleic acid-binding protein, contains PIN domain - 38 a-m-kz----r--------------- - [R] COG1848 Predicted nucleic acid-binding protein, contains PIN domain - 11 ao--k--q--r--c------------ - [R] COG2402 Predicted nucleic acid-binding protein, contains PIN domain - 5 a----z-------c------------ - [R] COG2405 Predicted nucleic acid-binding protein, contains PIN domain - 4 --------v-r-b------------- - [R] COG1623 Predicted nucleic-acid-binding protein (contains the HHH domain) - 30 aompkz----r----------j---- - [R] COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon - 3 --m--------lb------------- - [R] COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain - 3 --------------efg--------- - [R] COG3529 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain - 13 ---p------r-bcef-hs------- - [R] COG1090 Predicted nucleoside-diphosphate sugar epimerases (SulA family) - 3 a-m----------------------- - [R] COG1548 Predicted nucleotide-binding enzyme - 23 ao-pkzy-vdrlbce-g--n-j---- CinA [R] COG1058 Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA - 9 aompk-y------------------- - [R] COG1019 Predicted nucleotidyltransferase - 4 a---kz-------------------- - [R] COG2413 Predicted nucleotidyltransferase - 4 --m---------b--f-----j---- - [R] COG3541 Predicted nucleotidyltransferase - 16 a-m-----vd---c-----n-j---- - [R] COG1669 Predicted nucleotidyltransferases - 34 a-m-kz-qv--------h-------- - [R] COG1708 Predicted nucleotidyltransferases - 3 ---------dr----------j---- - [R] COG3573 Predicted oxidoreductase - 6 ------y----l---f---n------ FMR2 [R] COG3560 Predicted oxidoreductase related to nitroreductase - 4 --m-----v----c------------ - [R] COG1453 Predicted oxidoreductases of the aldo/keto reductase family - 18 ao---z---d--bc-fgh----x--- - [R] COG2358 Predicted periplasmic binding protein - 3 --m-------------g---u----- - [R] COG2998 Predicted periplasmic ligand-binding protein - 12 --------------efgh-n--x--- OsmY [R] COG2823 Predicted periplasmic or secreted lipoprotein - 5 -----------lb-e----------- - [R] COG3443 Predicted periplasmic or secreted protein - 12 a--p-z-q-d--b-------u--i-- - [R] COG1427 Predicted periplasmic solute-binding protein - 25 -------q-drlb-efghsnujx-t- - [R] COG1559 Predicted periplasmic solute-binding protein - 12 a--p-z-q-d--b-------u--i-- - [R] COG2107 Predicted periplasmic solute-binding protein - 8 --m----qv-r-bce----------- - [R] COG0390 Predicted permease - 71 aom-k--qvdrlbcefghsnujx-t- PerM [R] COG0628 Predicted permease - 12 ------------b--fgh-nu----- - [R] COG2056 Predicted permease - 8 -o------------e-gh-------- - [R] COG2985 Predicted permease - 4 ----------r-bc-------j---- - [R] COG3329 Predicted permease - 6 a--pk--------------------- - [R] COG3368 Predicted permease - 26 --m---yqv---bcefghs-ujx--- - [R] COG0679 Predicted permeases - 14 a-m----qv-rlbce-----u----- - [R] COG0701 Predicted permeases - 93 aompkz-qvdrlbcefghsnuj---- - [R] COG0730 Predicted permeases - 46 --------vd---cefghsnujxit- - [R] COG0795 Predicted permeases - 12 ------------b-efgh---j---- RarD [R] COG2962 Predicted permeases - 7 a-m----q-------f---------- - [R] COG2044 Predicted peroxiredoxins - 7 ------------b--fg---uj---- PhoX [R] COG3211 Predicted phosphatase - 54 ----k-y-vdrlbcefghsn-j-i-- - [R] COG0637 Predicted phosphatase/phosphohexomutase - 52 aom-k-yq-drlbcefghsnuj--tw Gph [R] COG0546 Predicted phosphatases - 12 aompkz------b------------- - [R] COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold - 29 aom-kzy-v-rlb-efg-------tw - [R] COG0622 Predicted phosphoesterase - 8 aom-kz-q------------------ - [R] COG2129 Predicted phosphoesterases, related to the Icc protein - 6 -o---z------b-------u----- - [R] COG2404 Predicted phosphohydrolase of the DHH superfamily - 18 --m----q-drlb-e-----uj-i-- - [R] COG1408 Predicted phosphohydrolases - 30 a-m-kzyq--r--cefgh---j-i-- Icc [R] COG1409 Predicted phosphohydrolases - 5 --m----q-d-------------i-- - [R] COG1768 Predicted phosphohydrolases - 9 ---p---q--r---------uj---- - [R] COG1926 Predicted phosphoribosyltransferases - 20 ao-pkzy------------nu---t- - [R] COG2236 Predicted phosphoribosyltransferases - 6 ---------------f--sn-j---- - [R] COG3178 Predicted phosphotransferases related to Ser/Thr protein kinases - 38 a---kz-qvdrlbcefghs--j-it- MazG [R] COG1694 Predicted pyrophosphatase - 11 aompk--------------------- - [R] COG2150 Predicted regulator of amino acid metabolism, contains ACT domain - 6 -----z---d-lb--------j---- - [R] COG2514 Predicted ring-cleavage extradiol dioxygenase - 6 --m-----v--lb------------- - [R] COG1827 Predicted small molecule binding protein (contains 3H domain) - 13 ---------d-lbce-gh---j---- - [R] COG2103 Predicted sugar phosphate isomerase - 45 -omp-z-q-dr-bcefghsnuj--t- FcbC [R] COG0824 Predicted thioesterase - 7 ao--kz-------------------- - [R] COG2522 Predicted transcriptional regulator - 5 --------------e-gh-------- - [R] COG3054 Predicted transcriptional regulator - 4 ----------r----------j---- - [R] COG3800 Predicted transcriptional regulator - 6 a-m-k--------------------- - [R] COG1800 Predicted transglutaminase-like proteases - 29 -o-p----vd----efg-s-uj---- - [R] COG2391 Predicted transporter components - 30 -omp--y---r-bcefghsn-jx--- AarF [R] COG0661 Predicted unusual protein kinase - 13 -o--------r-b-efgh-n-j---- FxsA [R] COG3030 Protein affecting phage T7 exclusion by the F plasmid - 11 a------q-d--bce------j---- - [R] COG2304 Protein containing von Willebrand factor (vWF) type A domain - 11 --------------efghsn-j---- ComJ [R] COG2961 Protein involved in catabolism of external DNA - 13 a--p-z---d---c-f-----j---- - [R] COG2366 Protein related to penicillin acylase - 9 ------y-----------s--j-i-- - [R] COG2940 Proteins containing SET domain - 28 ------yq-dr-bcefg-snuj---- - [R] COG0523 Putative GTPases (G3E family) - 9 -----------lb-efg-s-uj---- - [R] COG2910 Putative NADH-flavin reductase - 9 -o----y-----b-ef-----j---- - [R] COG2130 Putative NADP-dependent oxidoreductases - 35 ------------b-efgh-nuj---w MdaB [R] COG2249 Putative NADPH-quinone reductase (modulator of drug activity B) - 7 ------------b-efg----j---- AbrB [R] COG3180 Putative ammonia monooxygenase - 17 ----k----d-lb-efgh-n------ - [R] COG1380 Putative effector of murein hydrolase LrgA - 14 ---------d--bcefg--n-j---- - [R] COG2334 Putative homoserine kinase type II (protein kinase fold) - 76 aompkzyq-dr-bcefghs-uj--tw ThiJ [R] COG0693 Putative intracellular protease/amidase - 7 --------------efghs------- LppC [R] COG3107 Putative lipoprotein - 10 aompkzy------------------- - [R] COG1245 RNase L inhibitor homolog, predicted ATPase - 8 --------------e-ghsn------ - [R] COG3113 STAS domain protein - 4 --m----------c------------ - [R] COG2144 Selenophosphate synthetase-related proteins - 31 -o----y---rlb-ef-hsnuj---- DltE [R] COG0300 Short-chain dehydrogenases of various substrate specificities - 5 -om-k--------------------- - [R] COG1202 Specific archaeal helicases - 9 --------------efghsn------ SspB [R] COG2969 Stringent starvation protein B - 16 ---------dr--cefghs--j-i-- - [R] COG2166 SufE protein probably involved in Fe-S center assembly - 28 aom--zyqvd---cefghsnuj-it- SurE [R] COG0496 Survival protein, predicted acid phosphatase - 57 ------y--d----efgh-nuj---- - [R] COG0790 TPR repeat proteins - 294 aompk-yqvd-lbcefghsnujxit- NrfG [R] COG0457 TPR-repeat-containing proteins - 9 ---------d--b-ef----uj---- - [R] COG2351 Transthyretin-like protein - 24 ---------d-lbcefghsnuj-it- Abc [R] COG1135 Uncharacterized ABC-type transport system ATPase component - 48 ao--kz--vd-lb--f-----j--tw - [R] COG1079 Uncharacterized ABC-type transport system, permease component - 4 a---kz-------------------- - [R] COG2401 Uncharacterized ABC-type transporter - 19 aom-k---vd-lbc-------jxit- BioY [R] COG1268 Uncharacterized ACR - 6 aom-kz-------------------- - [R] COG2108 Uncharacterized ACR related to pyruvate formate-lyase activating enzyme - 16 --m----qv---b-efghsn-j---- Hfq [R] COG1923 Uncharacterized ACR, host factor I protein - 18 aompk---v-r-bc-f-h---j---- - [R] COG1878 Uncharacterized ACR, predicted metal-dependent hydrolases - 17 a-m----q-dr--------n------ - [R] COG2018 Uncharacterized ACR; distantly related to eukaryotic homeotic protein bithoraxoid - 5 ---------d-------h-n------ - [R] COG2842 Uncharacterized ATPase, putative transposase - 23 --mpk---v-r------h--uj---- - [R] COG1373 Uncharacterized ATPases of the AAA superfamily - 4 --m-k--------------------- - [R] COG1365 Uncharacterized ATPases of the PP-loop superfamily - 4 a-m-k--------------------- - [R] COG2517 Uncharacterized ArCR (contains C-terminal EMAP domain) - 17 --------vdrlb-efgh-n----t- OraA [R] COG2137 Uncharacterized BCR - 4 --------------e-g----j---- - [R] COG3788 Uncharacterized BCR related to glutathione S-transferase, MAPEG superfamily - 9 ---------dr--c----s--jx-t- - [R] COG1754 Uncharacterized C-terminal domain of topoisomerase IA - 9 a---k---v--lbc--g----j---- - [R] COG2509 Uncharacterized FAD-dependent dehydrogenases - 3 a-m-----v----------------- - [R] COG2768 Uncharacterized Fe-S center protein - 10 --m----qv--lb-e-g--------- - [R] COG1242 Uncharacterized Fe-S oxidoreductases - 7 -o------------efg----j---- - [R] COG3217 Uncharacterized Fe-S protein - 9 a-m-kz-qv----------------- PflX [R] COG1313 Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins - 4 --------------e-g---u----- Bax [R] COG2992 Uncharacterized FlgJ-related protein - 11 --m--z---dr-b-e------j---- - [R] COG2068 Uncharacterized MobA-related protein - 98 aompkzyqvdrlbcefgh---j--tw HcaD [R] COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases - 9 aompkz-------------------- - [R] COG1634 Uncharacterized Rossmann fold enzyme - 6 aom-kz-------------------- - [R] COG1645 Uncharacterized Zn-finger containing protein - 6 --mp--------b--------j---- - [R] COG3383 Uncharacterized anaerobic dehydrogenase - 3 a-m----------------------- - [R] COG2054 Uncharacterized archaeal kinases related to aspartokinases, uridylate kinases - 14 -o------------e-gh-------- TorD [R] COG3381 Uncharacterized component of anaerobic dehydrogenases - 18 -o-p-z---dr-b--f-----j---- - [R] COG2329 Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides - 16 ---------d-lbcefg-s--jxi-- - [R] COG1054 Uncharacterized enzyme related to sulfurtransferases - 21 ao-p-z-q-dr-b-ef-h--uj---- - [R] COG2041 Uncharacterized enzymes, related to nitrate reductase - 14 -o-------d--b-e---s--j---- - [R] COG2311 Uncharacterized membrane protein - 7 ---------d--b----h-------- - [R] COG2364 Uncharacterized membrane protein - 39 aompkzyqvdrlbcefghs-uj--t- GlpG [R] COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid) - 5 --------------efg----j---- GlpM [R] COG3136 Uncharacterized membrane protein required for alginate biosynthesis - 7 a-------vd--b-e----------- - [R] COG1811 Uncharacterized membrane protein, possible Na+ channel or pump - 28 -------qvdr--cefghsnujxit- MviN [R] COG0728 Uncharacterized membrane protein, putative virulence factor - 18 aompk-y-------------u----- - [R] COG1287 Uncharacterized membrane protein, required for N-linked glycosylation - 17 ------------b-efghsnuj--t- CvpA [R] COG1286 Uncharacterized membrane protein, required for colicin V production - 4 ------------bc-f---------- SpmA [R] COG2715 Uncharacterized membrane protein, required for spore maturation in B.subtilis. - 29 -o-----qvdrlbcefg-snuj---w CinA [R] COG1546 Uncharacterized protein (competence- and mitomycin-induced) - 24 -o---zyq-d--b--fg-snujx--- - [R] COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems - 17 --mp-zy---r-b-ef-----j---- PrpD [R] COG2079 Uncharacterized protein involved in propionate catabolism - 8 --------------efghs------- - [R] COG2915 Uncharacterized protein involved in purine metabolism - 9 --------------e--h-n-j---- HipA [R] COG3550 Uncharacterized protein related to capsule biosynthesis enzymes - 18 a-m--------lb-e---snuj---- - [R] COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog - 6 ---------d--b-e------j---- CopC [R] COG2372 Uncharacterized protein, homolog of Cu resistance protein CopC - 14 -om--z--v-r-bc-------j---- - [R] COG1402 Uncharacterized protein, putative amidase - 7 ---------dr--c-fg----j---- - [R] COG2802 Uncharacterized protein, similar to the N-terminal domain of Lon protease - 13 -------q------efghsnu----- - [R] COG1778 Uncharacterized proteins of HAD superfamily, CMP-Neu5Ac homologs - 11 aompkzy------------------- - [R] COG1412 Uncharacterized proteins of PilT N-term./Vapc superfamily - 21 a--pk-y-v---b--f--s-uj---- - [R] COG1524 Uncharacterized proteins of the AP superfamily - 8 aompk--------------------- - [R] COG2047 Uncharacterized proteins of the ATP-grasp superfamily - 16 ----k----dr-b-efgh-nu----- - [R] COG1540 Uncharacterized proteins, homologs of lactam utilization protein B - 6 --m--z----r----------j---- CoxE [R] COG3552 Von Willebrand A-domain-containing protein - 86 ------y-vd---c--g----j---- - [R] COG2319 WD40 repeat protein - 16 a-m-k--q-d---ce-----u----- HybF [R] COG0375 Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) - 37 ---p-zy---rlbcef--snuj---- AdhP [R] COG1064 Zn-dependent alcohol dehydrogenases - 156 aompkzyqvdrlbcefghsnuj---- GloB [R] COG0491 Zn-dependent hydrolases, including glyoxylases - 27 aompkz-qvdr-bc--g--nuj---- SpoIVFB [R] COG1994 Zn-dependent proteases - 3 a-m----------------------- - [R] COG2158 Zn-finger-like domain - 3 aom----------------------- - [R] COG3364 Zn-ribbon containing protein - 11 -------q-dr---------u--it- - [R] COG1579 Zn-ribbon protein, possibly nucleic acid-binding - 40 ao---z--vd--bcefgh---j--t- - [S] COG1593 Integral membrane protein, possible transporter - 41 a-mpkz-q-d--b-efghsnuj-it- MarC [S] COG2095 Integral membrane proteins of the MarC family - 8 --m-k--------------------- - [S] COG1822 Predicted archaeal membrane protein - 24 --------v-rlbcefgh--uj-it- - [S] COG0762 Predicted integral membrane protein - 11 --m------d-l---------j---- - [S] COG3548 Predicted integral membrane protein - 27 -------qvd-lbcefgh-nuj---w - [S] COG0344 Predicted membrane protein - 5 a---k---v---b------------- - [S] COG1470 Predicted membrane protein - 9 --m------drlb------------- - [S] COG1511 Predicted membrane protein - 5 a-m------d--b------------- - [S] COG1557 Predicted membrane protein - 6 aom-k--------------------- - [S] COG1784 Predicted membrane protein - 6 aom--z-------c------------ - [S] COG1808 Predicted membrane protein - 10 aompk-------bc------------ - [S] COG1836 Predicted membrane protein - 5 ---------dr-bc------------ - [S] COG1950 Predicted membrane protein - 12 --m---------b-ef--snu----- - [S] COG1971 Predicted membrane protein - 11 -------------c-f--snujx--- - [S] COG1981 Predicted membrane protein - 8 -om-----v--lb---g-------t- - [S] COG2035 Predicted membrane protein - 29 aompkz---------f-h---j---- - [S] COG2064 Predicted membrane protein - 9 -o----y---r--c-fg----j---- - [S] COG2119 Predicted membrane protein - 5 -------q--r--ce----------- - [S] COG2149 Predicted membrane protein - 7 --m-----------e--h---j--t- - [S] COG2215 Predicted membrane protein - 9 aompkz-------------------- - [S] COG2237 Predicted membrane protein - 28 -o-------dr-b-efgh-n-j---- - [S] COG2259 Predicted membrane protein - 14 --m------drlbc-f--------t- XynA [S] COG2314 Predicted membrane protein - 6 -o-----q-d--b------------- - [S] COG2322 Predicted membrane protein - 19 ---------d-lb-e----------- - [S] COG2323 Predicted membrane protein - 4 -om------d---c------------ - [S] COG2324 Predicted membrane protein - 8 --m-k--q-------f---n------ - [S] COG2510 Predicted membrane protein - 18 -o-------d-lb-efgh--uj---- - [S] COG2860 Predicted membrane protein - 8 -----------lb--f---nu----- - [S] COG3326 Predicted membrane protein - 5 ---------dr-b------------- - [S] COG3336 Predicted membrane protein - 5 aomp---------------------- - [S] COG3356 Predicted membrane protein - 10 ---pkz-------------------- - [S] COG3371 Predicted membrane protein - 5 a--p----v----------------- - [S] COG3374 Predicted membrane protein - 4 -o--------r-b------------- - [S] COG3428 Predicted membrane protein - 9 -o-pk--q-----c------------ - [S] COG3431 Predicted membrane protein - 5 -o-p----v----------------- - [S] COG3462 Predicted membrane protein - 5 a-m------------f-----j---- - [S] COG3503 Predicted membrane protein - 3 -------------c-f-----j---- - [S] COG3556 Predicted membrane protein - 4 --------------e-gh-------- - [S] COG3647 Predicted membrane protein - 3 ---------------fg----j---- - [S] COG3650 Predicted membrane protein - 5 -------------------n-jx--- - [S] COG3671 Predicted membrane protein - 4 -----------lbc------------ - [S] COG3689 Predicted membrane protein - 4 ---------d-l-c------------ - [S] COG3694 Predicted membrane protein - 5 -----------l-----h-n-j---- - [S] COG3759 Predicted membrane protein - 4 -----------------h---j--t- - [S] COG3762 Predicted membrane protein - 6 ------------b-e------j---- - [S] COG3766 Predicted membrane protein - 5 --------------e--h---j---- - [S] COG3768 Predicted membrane protein - 5 --------------e-gh-------- - [S] COG3771 Predicted membrane protein - 5 --------------efg--------- - [S] COG3776 Predicted membrane protein - 4 -------------ce------j---- - [S] COG3781 Predicted membrane protein - 3 -om----------------------- - [S] COG3815 Predicted membrane protein - 3 -----------l--------uj---- - [S] COG3817 Predicted membrane protein - 3 -----------l--------uj---- - [S] COG3819 Predicted membrane protein - 7 a-m-k--------------------- - [S] COG1967 Predicted membrane proteins - 20 ---------drlb-ef-----j---- - [S] COG2261 Predicted membrane proteins - 5 -------q-------fgh--u----- - [S] COG3019 Predicted metal-binding protein - 5 ---------d-----f-----j---- - [S] COG3652 Predicted outer membrane protein - 4 -----------------h---j--t- - [S] COG3683 Predicted periplasmic metal-binding protein - 3 ---------d--------s--j---- - [S] COG3656 Predicted periplasmic protein - 7 ---------------fg----j---- - [S] COG3672 Predicted periplasmic protein - 4 ---------d----e------j---- - [S] COG3698 Predicted periplasmic protein - 4 ---------------f-h-n------ - [S] COG3471 Predicted periplasmic/secreted protein - 4 -----------l--e-----u----- - [S] COG3477 Predicted periplasmic/secreted protein - 9 a-mp---------------------- ISA1214 [S] COG3466 Putative transposon-encoded protein - 3 ------------------s--j---- VirB3 [S] COG3702 Type IV secretory pathway, VirB3 components - 16 aompk-yqv-r-bc------------ - [S] COG0011 Uncharacterized ACR - 27 aompkzyqvdr--cefg-s-uj---- - [S] COG0062 Uncharacterized ACR - 36 ------yqvdrlbcefghsnujxitw - [S] COG0217 Uncharacterized ACR - 49 ------yq-dr-bcefghsn-jx--- IscA [S] COG0316 Uncharacterized ACR - 36 aom-k-y--drlb-efgh-nu--itw - [S] COG0327 Uncharacterized ACR - 21 aom---yqvdrlbce-gh-------- - [S] COG0391 Uncharacterized ACR - 22 aompk---v-rlbce-gh---j---- - [S] COG0393 Uncharacterized ACR - 10 ------y-----bcefg-s--j---- - [S] COG0397 Uncharacterized ACR - 19 ------y---rlbce-g----j---- - [S] COG0398 Uncharacterized ACR - 22 a-m-kz-qvdr-bcefg--------- - [S] COG0432 Uncharacterized ACR - 22 aompkzyq-d----efgh--u----- - [S] COG0585 Uncharacterized ACR - 27 -------qvdrlbcefghsnujxit- - [S] COG0759 Uncharacterized ACR - 10 ao---z-qv-r--c---------i-- - [S] COG1259 Uncharacterized ACR - 9 a---------r-b--f-----j---- - [S] COG1273 Uncharacterized ACR - 3 --m---------------------t- - [S] COG1306 Uncharacterized ACR - 8 --m-----v--lb------------- - [S] COG1323 Uncharacterized ACR - 6 --mpk---v-r--------------- - [S] COG1332 Uncharacterized ACR - 6 a-m----qv---b------------- - [S] COG1336 Uncharacterized ACR - 6 --mpk---v-r--------------- - [S] COG1337 Uncharacterized ACR - 9 a-mp----v-rlb------------- - [S] COG1343 Uncharacterized ACR - 28 aompk--qvdrlbc-f--sn-j--tw - [S] COG1354 Uncharacterized ACR - 30 -o-------drlbcefgh-n-j---- - [S] COG1359 Uncharacterized ACR - 12 aompkz-qv-r--------------- - [S] COG1371 Uncharacterized ACR - 7 --m-k-------b------------- - [S] COG1379 Uncharacterized ACR - 9 a-mpkz---------------j---- - [S] COG1415 Uncharacterized ACR - 9 aomp---q-d-----------j---- - [S] COG1416 Uncharacterized ACR - 8 a-m----------------------- - [S] COG1417 Uncharacterized ACR - 5 --mpk---v----------------- - [S] COG1421 Uncharacterized ACR - 12 -om-k---v----c----s--j--t- - [S] COG1430 Uncharacterized ACR - 31 aom-k--q-d---c-fg--nuj--t- - [S] COG1432 Uncharacterized ACR - 21 a-mpk---v-------g--------- - [S] COG1433 Uncharacterized ACR - 24 -------qvd-l-cefghsn-jx--- - [S] COG1434 Uncharacterized ACR - 7 a-m-kz-q------------------ - [S] COG1458 Uncharacterized ACR - 16 aompkz--v---b--f--sn------ - [S] COG1469 Uncharacterized ACR - 11 aom-------rl-----------i-- - [S] COG1478 Uncharacterized ACR - 37 -om-k---v-----e-gh-nu----w - [S] COG1479 Uncharacterized ACR - 24 -------q-dr-bcefghsnujxit- - [S] COG1496 Uncharacterized ACR - 4 a-m-k--------------------- - [S] COG1504 Uncharacterized ACR - 4 -------qv-r--------------- - [S] COG1507 Uncharacterized ACR - 6 --mpk--q------------------ - [S] COG1517 Uncharacterized ACR - 21 a-mpkz-qv-rlb-e--h-nu----- - [S] COG1518 Uncharacterized ACR - 3 --m----qv----------------- - [S] COG1542 Uncharacterized ACR - 8 ----k-----r-bc----------t- - [S] COG1543 Uncharacterized ACR - 14 ao-------d-lb-e--h-nu----- - [S] COG1556 Uncharacterized ACR - 11 -------q-----c----snujx--- - [S] COG1565 Uncharacterized ACR - 6 --mpk---v-r--------------- - [S] COG1567 Uncharacterized ACR - 5 a-m-k--------------------- - [S] COG1572 Uncharacterized ACR - 21 --------vd-lb-efghsnuj---w - [S] COG1576 Uncharacterized ACR - 7 a-m-k--qv----------------- - [S] COG1578 Uncharacterized ACR - 13 a-mpk--qv----------------- - [S] COG1583 Uncharacterized ACR - 8 a-m-kzy------------------- - [S] COG1590 Uncharacterized ACR - 18 a-mp----v----ce----nuj---- - [S] COG1598 Uncharacterized ACR - 11 aompkz-------------------- - [S] COG1602 Uncharacterized ACR - 4 a------qv---b------------- - [S] COG1604 Uncharacterized ACR - 12 ------y-v-r-b--fg-snuj---- - [S] COG1610 Uncharacterized ACR - 5 a---------r--c------------ - [S] COG1615 Uncharacterized ACR - 5 a-m-k--------------------- - [S] COG1617 Uncharacterized ACR - 19 aom-k--q-d-lbc---------itw - [S] COG1624 Uncharacterized ACR - 10 aompkz---d---------------- - [S] COG1628 Uncharacterized ACR - 16 --m-k--qv---b--------j---- - [S] COG1633 Uncharacterized ACR - 5 a-m-----v----c------------ - [S] COG1641 Uncharacterized ACR - 11 a--pkz-qv-r-------------t- - [S] COG1656 Uncharacterized ACR - 8 a-m-kz---------f-----j---- - [S] COG1679 Uncharacterized ACR - 12 --m-k--qv---b--fg----j---- - [S] COG1683 Uncharacterized ACR - 13 a-m-kz-qv-----e----------- - [S] COG1688 Uncharacterized ACR - 23 aompkz-qvdr-b-ef---------- RtcB [S] COG1690 Uncharacterized ACR - 3 --m-k--q------------------ - [S] COG1700 Uncharacterized ACR - 11 --m-----v--l--ef-h---j--tw LemA [S] COG1704 Uncharacterized ACR - 20 aom-kz--v-----efgh-n-j---- - [S] COG1720 Uncharacterized ACR - 35 ao-pkz-qvdr-bc-fg----j--t- - [S] COG1721 Uncharacterized ACR - 6 ------y---------------xi-- - [S] COG1723 Uncharacterized ACR - 21 ao---z--vd--b-efgh-n-j-it- - [S] COG1738 Uncharacterized ACR - 22 -o----y-vd-lb-efgh-nu---tw - [S] COG1739 Uncharacterized ACR - 4 a-m-----v----------------- - [S] COG1751 Uncharacterized ACR - 7 a-m-k--------------------- - [S] COG1753 Uncharacterized ACR - 8 a-mpkzy------------------- Mra1 [S] COG1756 Uncharacterized ACR - 3 a------qv----------------- - [S] COG1769 Uncharacterized ACR - 8 a-m-kz---------f-----j---- - [S] COG1786 Uncharacterized ACR - 24 a--pkz-qvd--b-efgh---j---- - [S] COG1801 Uncharacterized ACR - 3 --m---------b------------- - [S] COG1809 Uncharacterized ACR - 11 aompkz-q---l-------------- - [S] COG1812 Uncharacterized ACR - 8 aompk---v----------------- - [S] COG1833 Uncharacterized ACR - 9 a-mpkz--v-r--------------- - [S] COG1839 Uncharacterized ACR - 4 --m-k--q------------------ - [S] COG1851 Uncharacterized ACR - 10 a-m-kz-q------------------ - [S] COG1857 Uncharacterized ACR - 10 aompkz------b------------- - [S] COG1865 Uncharacterized ACR - 14 a-m-kz--------e-gh---jxi-- - [S] COG1872 Uncharacterized ACR - 18 aompk-------b------------- - [S] COG1873 Uncharacterized ACR - 5 a-m-k---v----------------- - [S] COG1895 Uncharacterized ACR - 6 a-m----------c------------ - [S] COG1900 Uncharacterized ACR - 7 aom-kz----------g--------- - [S] COG1901 Uncharacterized ACR - 4 a---k---v----------------- - [S] COG1906 Uncharacterized ACR - 11 aom-kz-qv-----e-----u----- - [S] COG1912 Uncharacterized ACR - 4 a-m----------c------------ - [S] COG1915 Uncharacterized ACR - 6 aom-------r--------------- - [S] COG1920 Uncharacterized ACR - 4 a-m-k--------------------- - [S] COG1935 Uncharacterized ACR - 10 -om-------r---ef-h---j---- - [S] COG1944 Uncharacterized ACR - 12 aompk------------------i-- - [S] COG1945 Uncharacterized ACR - 9 a-mpkz-q------------------ - [S] COG1980 Uncharacterized ACR - 10 a-mp-z------b-e-g--------- - [S] COG1986 Uncharacterized ACR - 10 aompkzy------------------- - [S] COG1990 Uncharacterized ACR - 8 --m-k--------------------- - [S] COG1991 Uncharacterized ACR - 10 -om-kz--v----------------- - [S] COG1992 Uncharacterized ACR - 8 --m-k--qv-r----------j---- - [S] COG1993 Uncharacterized ACR - 5 a-m-----v----c------------ - [S] COG2006 Uncharacterized ACR - 20 aompkz--vd-l-c-f-----j---- - [S] COG2013 Uncharacterized ACR - 4 --m-k--------------------- - [S] COG2014 Uncharacterized ACR - 16 a-m-kz----r--ce-g--------- RelE [S] COG2026 Uncharacterized ACR - 4 a-m-k--------------------- - [S] COG2028 Uncharacterized ACR - 4 --m-k--------------------- - [S] COG2029 Uncharacterized ACR - 6 -omp--y------------------- - [S] COG2042 Uncharacterized ACR - 12 aompkzyqv----------------- - [S] COG2078 Uncharacterized ACR - 15 ao-pkz---dr-b--f-----j---- - [S] COG2096 Uncharacterized ACR - 10 --m-k----d--bcefg--------- - [S] COG2105 Uncharacterized ACR - 8 aom-kzy------------------- - [S] COG2106 Uncharacterized ACR - 18 ---------dr--cefg-snuj---- - [S] COG2127 Uncharacterized ACR - 24 ---------dr-b-ef---n-j---- - [S] COG2128 Uncharacterized ACR - 17 -o----y---r-b-ef-----j---- - [S] COG2135 Uncharacterized ACR - 14 aom------dr-bc------------ - [S] COG2138 Uncharacterized ACR - 7 ----------r--ce----------- - [S] COG2161 Uncharacterized ACR - 3 a-m-----v----------------- - [S] COG2164 Uncharacterized ACR - 12 ao-p---q----b------------- - [S] COG2210 Uncharacterized ACR - 13 a-m-kz--v----------------- - [S] COG2250 Uncharacterized ACR - 4 ----k-----r---------u----- - [S] COG2253 Uncharacterized ACR - 4 ----k----dr--------------- - [S] COG2306 Uncharacterized ACR - 8 -o-------dr-b--fg--------- GrpB [S] COG2320 Uncharacterized ACR - 6 --m-----vd---ce----------- WcaK [S] COG2327 Uncharacterized ACR - 12 --m------d---c-----n-j---- - [S] COG2361 Uncharacterized ACR - 5 --m-kz---d---------------- - [S] COG2383 Uncharacterized ACR - 4 ----kz-------c------------ - [S] COG2403 Uncharacterized ACR - 3 --m--z--v----------------- - [S] COG2406 Uncharacterized ACR - 3 a-m--z-------------------- - [S] COG2410 Uncharacterized ACR - 7 a---kz-------------------- - [S] COG2411 Uncharacterized ACR - 7 ao-pkz-------------------- - [S] COG2412 Uncharacterized ACR - 4 a---kz-------------------- - [S] COG2419 Uncharacterized ACR - 6 --m--z--------e-g--------- - [S] COG2425 Uncharacterized ACR - 6 a----z------b------------- - [S] COG2427 Uncharacterized ACR - 4 ----kzy------------------- - [S] COG2428 Uncharacterized ACR - 5 -om--z-------------------- - [S] COG2429 Uncharacterized ACR - 5 a---kz-------------------- - [S] COG2430 Uncharacterized ACR - 7 aom-kz-------------------- - [S] COG2433 Uncharacterized ACR - 5 a----z------b------------- - [S] COG2436 Uncharacterized ACR - 9 ----kz----r--c----s------- - [S] COG2442 Uncharacterized ACR - 11 a-m-k--q----b------------- - [S] COG2445 Uncharacterized ACR - 8 aompk--------------------- - [S] COG2450 Uncharacterized ACR - 5 --m-k--------------------- - [S] COG2454 Uncharacterized ACR - 4 --m-k--------------------- - [S] COG2456 Uncharacterized ACR - 5 a-m-k--------------------- - [S] COG2457 Uncharacterized ACR - 6 a---k---v--lb------------- - [S] COG2461 Uncharacterized ACR - 6 aom-k--------------------- - [S] COG2469 Uncharacterized ACR - 11 ---------d-lb-e-g--n-----w - [S] COG2501 Uncharacterized ACR - 23 -----z----rlb-efgh-n-j---- EbsC [S] COG2606 Uncharacterized ACR - 5 --m--z-----l-------n------ - [S] COG2848 Uncharacterized ACR - 9 ------------b-ef-hsn------ - [S] COG2850 Uncharacterized ACR - 9 --------------efghs--j---- - [S] COG2912 Uncharacterized ACR - 10 --------------efghsn------ - [S] COG2921 Uncharacterized ACR - 5 ------y-v---------s------- - [S] COG2930 Uncharacterized ACR - 13 ------y-------efghsn-jx--- - [S] COG2938 Uncharacterized ACR - 9 --m-----------efgh---j---- - [S] COG2983 Uncharacterized ACR - 5 --m-----------e-gh-------- - [S] COG3013 Uncharacterized ACR - 8 --------------efgh---j---- - [S] COG3025 Uncharacterized ACR - 10 --------------efgh-------- - [S] COG3111 Uncharacterized ACR - 7 --------------efg--------- - [S] COG3148 Uncharacterized ACR - 4 --m---y---r-------s------- - [S] COG3163 Uncharacterized ACR - 7 -o-pkz---------f---------- - [S] COG3199 Uncharacterized ACR - 9 a--------dr----f-----j---- - [S] COG3246 Uncharacterized ACR - 9 -o-p-z---dr-b------------- - [S] COG3253 Uncharacterized ACR - 9 ---p--------b-e-----uj---- - [S] COG3254 Uncharacterized ACR - 6 -o--------r--c-f---------- - [S] COG3268 Uncharacterized ACR - 6 a---k---------e-g--------- - [S] COG3270 Uncharacterized ACR - 5 --m-----------efg--------- - [S] COG3272 Uncharacterized ACR - 8 aom-kz-------------------- - [S] COG3273 Uncharacterized ACR - 5 --m------------fg----j---- - [S] COG3287 Uncharacterized ACR - 4 -om--z---d---------------- - [S] COG3294 Uncharacterized ACR - 3 ------y-----b--f---------- - [S] COG3332 Uncharacterized ACR - 7 --m---------bc-------j---- - [S] COG3339 Uncharacterized ACR - 5 -o---z------b--f---------- - [S] COG3342 Uncharacterized ACR - 9 ------y---r----f-----jx--- - [S] COG3346 Uncharacterized ACR - 8 ---p--------bc-------j---- - [S] COG3347 Uncharacterized ACR - 4 -o--------r--c------------ - [S] COG3349 Uncharacterized ACR - 5 ---p----v-------g---u----- - [S] COG3350 Uncharacterized ACR - 3 -o-------d--------s------- - [S] COG3358 Uncharacterized ACR - 3 -o--------r----f---------- - [S] COG3360 Uncharacterized ACR - 3 -o--------r-b------------- - [S] COG3361 Uncharacterized ACR - 5 -omp----v----------------- - [S] COG3367 Uncharacterized ACR - 5 ---p-z---d---------------- - [S] COG3375 Uncharacterized ACR - 5 a--p--------b------------- - [S] COG3377 Uncharacterized ACR - 4 -o--kz-------------------- - [S] COG3379 Uncharacterized ACR - 7 -----z-----lb--f-----j---- - [S] COG3382 Uncharacterized ACR - 7 ---p----------ef-h---j---- - [S] COG3384 Uncharacterized ACR - 8 --mp------r----------j---- - [S] COG3387 Uncharacterized ACR - 10 ---p------r-b-e------j---- - [S] COG3391 Uncharacterized ACR - 4 -o--------r-b------------- - [S] COG3402 Uncharacterized ACR - 4 -o-------d--b------------- - [S] COG3403 Uncharacterized ACR - 8 ------y--d-------h-n------ ZEO1 [S] COG3406 Uncharacterized ACR - 3 ---p--y-----b------------- - [S] COG3410 Uncharacterized ACR - 6 -o-p-z---d-----------j---- - [S] COG3427 Uncharacterized ACR - 10 -o-p---q-----------n----t- - [S] COG3439 Uncharacterized ACR - 4 ---p----v------------j---- - [S] COG3461 Uncharacterized ACR - 5 a--p--------b------------- - [S] COG3465 Uncharacterized ACR - 4 ----------r-----g----j---- - [S] COG3496 Uncharacterized ACR - 3 ------y---------g----j---- - [S] COG3506 Uncharacterized ACR - 4 ----k-------b--------j---- - [S] COG3535 Uncharacterized ACR - 4 -----------lb-----s------- - [S] COG3538 Uncharacterized ACR - 4 ------y------c-------j---- - [S] COG3542 Uncharacterized ACR - 3 a-m------------------j---- - [S] COG3543 Uncharacterized ACR - 3 a--------d-----------j---- - [S] COG3603 Uncharacterized ACR - 3 ------y--------f-----j---- - [S] COG3673 Uncharacterized ACR - 9 ao---------lb------------- - [S] COG3679 Uncharacterized ACR - 4 --m-----------e--h-------- - [S] COG3681 Uncharacterized ACR - 5 ------------------sn-j---- - [S] COG3737 Uncharacterized ACR - 4 -----------l---f-----j---- - [S] COG3760 Uncharacterized ACR - 3 ------y--------f-----j---- - [S] COG3777 Uncharacterized ACR - 4 --------------e------j---- - [S] COG3785 Uncharacterized ACR - 20 ---------------f-----j---- - [S] COG3791 Uncharacterized ACR - 8 ---------d----e------j---- - [S] COG3831 Uncharacterized ACR - 29 -------qvdrlbcefghsnujxit- - [S] COG0799 Uncharacterized ACR (homolog of plant Iojap proteins) - 4 a---------r----------j---- - [S] COG3804 Uncharacterized ACR related to dihydrodipicolinate reductase - 19 a--pkzyqvdrl--ef-----j---- - [S] COG2110 Uncharacterized ACR related to the C-terminal domain of histone macroH2A1 - 8 ------y------cef---------- - [S] COG0401 Uncharacterized ACR, Blt101 homolog - 25 aompkz-q-dr--cef---------- - [S] COG1310 Uncharacterized ACR, PAD1/JAB1-related - 9 ------yqvd-lb-----------t- - [S] COG1774 Uncharacterized ACR, PSP1 homologs - 9 aom-k-------------s-----t- - [S] COG1916 Uncharacterized ACR, PrgY homolog (pheromone shutdown protein) - 26 --m----qvdrlbcefg-snuj--t- BacA [S] COG1968 Uncharacterized ACR, bacitracin resistance protein - 4 ----k--qv----------------- - [S] COG1856 Uncharacterized ACR, biotin synthetase homolog - 5 ------yq----b--f--s------- - [S] COG1791 Uncharacterized ACR, double-stranded beta-helix domain - 25 -ompk--qv-rlbc------uj---- - [S] COG1917 Uncharacterized ACR, double-stranded beta-helix domain - 3 ----------------g----j---- - [S] COG3837 Uncharacterized ACR, double-stranded beta-helix domain - 33 a-mp--y-vdrlbc-f-hsn-j---- - [S] COG0599 Uncharacterized ACR, homolog of gamma-carboxymuconolactone decarboxylase subunit - 7 a-------------e-g--n-j---- Hlx [S] COG3042 Uncharacterized ACR, putative hemolysin - 7 ao--kz-------c------------ - [S] COG2886 Uncharacterized ACR, small protein - 6 aom-k--------------------- - [S] COG1255 Uncharacterized ArCR - 9 aompkz-------------------- - [S] COG1303 Uncharacterized ArCR - 5 -om-k--------------------- - [S] COG1356 Uncharacterized ArCR - 9 aompkz-------------------- - [S] COG1460 Uncharacterized ArCR - 5 a-m-kz-------------------- - [S] COG1531 Uncharacterized ArCR - 4 --m-k--------------------- - [S] COG1627 Uncharacterized ArCR - 9 a-mpkz-------------------- - [S] COG1630 Uncharacterized ArCR - 8 aompkz-------------------- - [S] COG1650 Uncharacterized ArCR - 3 a-m----------------------- - [S] COG1665 Uncharacterized ArCR - 3 a-m----------------------- - [S] COG1667 Uncharacterized ArCR - 7 a-m-k--------------------- - [S] COG1673 Uncharacterized ArCR - 4 a-m-k--------------------- - [S] COG1689 Uncharacterized ArCR - 3 a-m----------------------- - [S] COG1693 Uncharacterized ArCR - 8 a-mpkz-------------------- - [S] COG1698 Uncharacterized ArCR - 7 aom-kz-------------------- - [S] COG1701 Uncharacterized ArCR - 4 --m-k--------------------- - [S] COG1710 Uncharacterized ArCR - 7 aompk--------------------- - [S] COG1711 Uncharacterized ArCR - 4 --m-k--------------------- - [S] COG1771 Uncharacterized ArCR - 4 a-m-k--------------------- - [S] COG1772 Uncharacterized ArCR - 3 a-m----------------------- - [S] COG1790 Uncharacterized ArCR - 8 a-m----------------------- - [S] COG1810 Uncharacterized ArCR - 5 --m-k--------------------- - [S] COG1817 Uncharacterized ArCR - 4 --m-k--------------------- - [S] COG1844 Uncharacterized ArCR - 9 aompkz-------------------- - [S] COG1849 Uncharacterized ArCR - 4 a-m-k--------------------- - [S] COG1852 Uncharacterized ArCR - 7 aompk--------------------- - [S] COG1860 Uncharacterized ArCR - 6 aom-k--------------------- - [S] COG1885 Uncharacterized ArCR - 8 a-mpkz-------------------- - [S] COG1888 Uncharacterized ArCR - 3 a-m----------------------- - [S] COG1891 Uncharacterized ArCR - 5 aom-k--------------------- - [S] COG1892 Uncharacterized ArCR - 8 a-mpkz-------------------- - [S] COG1909 Uncharacterized ArCR - 7 aom-kz-------------------- - [S] COG1931 Uncharacterized ArCR - 9 a-m----------------------- - [S] COG2043 Uncharacterized ArCR - 5 a-m-k--------------------- - [S] COG2083 Uncharacterized ArCR - 7 aom-kz-------------------- - [S] COG2090 Uncharacterized ArCR - 6 aomp---------------------- - [S] COG2098 Uncharacterized ArCR - 4 a-m------------------j---- - [S] COG2122 Uncharacterized ArCR - 18 a-m-kz-------------------- - [S] COG2880 Uncharacterized ArCR - 6 aom----------------------- - [S] COG2881 Uncharacterized ArCR - 6 a-m-kz-------------------- - [S] COG2892 Uncharacterized ArCR - 12 aomp---------------------- - [S] COG3269 Uncharacterized ArCR - 4 --m-kz-------------------- - [S] COG3286 Uncharacterized ArCR - 3 -om----------------------- - [S] COG3363 Uncharacterized ArCR - 3 aom----------------------- - [S] COG3365 Uncharacterized ArCR - 6 aom----------------------- - [S] COG3366 Uncharacterized ArCR - 5 --mp-z---------------j---- - [S] COG3369 Uncharacterized ArCR - 4 a--p-z-------------------- - [S] COG3370 Uncharacterized ArCR - 7 ao-pk--------------------- - [S] COG3372 Uncharacterized ArCR - 5 --mpk--------------------- - [S] COG3373 Uncharacterized ArCR - 4 ao-p---------------------- - [S] COG3388 Uncharacterized ArCR - 4 ao-p---------------------- - [S] COG3389 Uncharacterized ArCR - 7 ao-pk--------------------- - [S] COG3390 Uncharacterized ArCR - 3 aom----------------------- - [S] COG3398 Uncharacterized ArCR - 10 ao-p-z-------------------- - [S] COG3430 Uncharacterized ArCR - 4 ao-p---------------------- - [S] COG3612 Uncharacterized ArCR - 7 aom----------------------- - [S] COG1745 Uncharacterized ArCR; probably metal-binding - 31 --------vdrlbcefghsnujxitw - [S] COG0718 Uncharacterized BCR - 26 -------qvdrlbcefghsnujx-t- - [S] COG0779 Uncharacterized BCR - 16 ----------r-bc-fghsn-j-i-- - [S] COG1262 Uncharacterized BCR - 31 --------v--lb---g------itw - [S] COG1284 Uncharacterized BCR - 18 --------vd-lb----------i-- - [S] COG1302 Uncharacterized BCR - 26 --------vdrlb--f---------w DegV [S] COG1307 Uncharacterized BCR - 5 --------v---b---g-------t- - [S] COG1315 Uncharacterized BCR - 16 -----------l--efghsn-jxi-- - [S] COG1322 Uncharacterized BCR - 44 --------v-r-bcefg--n-j---- ErfK [S] COG1376 Uncharacterized BCR - 32 -------qvdrlbcefghsnujx-tw - [S] COG1385 Uncharacterized BCR - 17 --------v--lb-efghs---xit- - [S] COG1426 Uncharacterized BCR - 10 --------v-rlb------------w - [S] COG1481 Uncharacterized BCR - 9 -o-p-z-q-d--bc------------ - [S] COG1547 Uncharacterized BCR - 6 --------vdr-b------------- - [S] COG1550 Uncharacterized BCR - 13 -------qv--l-----hsnu-x--- - [S] COG1636 Uncharacterized BCR - 7 ---------d--bce----------- - [S] COG1649 Uncharacterized BCR - 3 --------v---------------t- - [S] COG1655 Uncharacterized BCR - 18 ------------b--fg-s-uj-it- - [S] COG1664 Uncharacterized BCR - 10 ----------r-b-efgh--u----- - [S] COG1666 Uncharacterized BCR - 10 ------------b-efg----j--t- - [S] COG1671 Uncharacterized BCR - 11 -------q-d--b--------j--tw - [S] COG1692 Uncharacterized BCR - 10 --------v---b-------u---t- - [S] COG1699 Uncharacterized BCR - 5 --------v---b-----------t- - [S] COG1728 Uncharacterized BCR - 9 -------q------efg-s--jx--- - [S] COG1729 Uncharacterized BCR - 9 ----------r-bcef-----j---- - [S] COG1742 Uncharacterized BCR - 10 ---------drlb----h-n------ - [S] COG1755 Uncharacterized BCR - 7 ----------rlbc------------ - [S] COG1799 Uncharacterized BCR - 13 ---------d--b-efg-sn-jx--- - [S] COG1806 Uncharacterized BCR - 16 -------q-----cefghsnuj---- - [S] COG1934 Uncharacterized BCR - 17 ---------drlbcef----u----- - [S] COG1937 Uncharacterized BCR - 6 --------v--lbc------------ - [S] COG1939 Uncharacterized BCR - 8 --------vd-lbc----------t- - [S] COG1963 Uncharacterized BCR - 3 -------qv---b------------- - [S] COG1978 Uncharacterized BCR - 19 ---------dr-b-ef-hsn-jx-tw - [S] COG2001 Uncharacterized BCR - 4 --------v---bc------------ - [S] COG2052 Uncharacterized BCR - 7 -------q------------ujx--- - [S] COG2121 Uncharacterized BCR - 6 ------------b--------jxi-- - [S] COG2155 Uncharacterized BCR - 6 -o--------r--cef---------- - [S] COG2170 Uncharacterized BCR - 6 -------q--r--c-f-----j---- - [S] COG2187 Uncharacterized BCR - 15 ---------dr-b-ef-h--u----- - [S] COG2258 Uncharacterized BCR - 8 -----------lbcef-----j---- - [S] COG2268 Uncharacterized BCR - 11 ---------dr--c-f-----j---- - [S] COG2307 Uncharacterized BCR - 11 ---------dr--c-f-----j---- - [S] COG2308 Uncharacterized BCR - 11 ---------d-lb-ef-----j---- MmcQ [S] COG2315 Uncharacterized BCR - 15 ---------d--bc-f-----j---- DinB [S] COG2318 Uncharacterized BCR - 11 ---------dr--c-fg---uj---- - [S] COG2326 Uncharacterized BCR - 4 --------vdr--------------- - [S] COG2331 Uncharacterized BCR - 10 ---------dr--c-------j---- - [S] COG2343 Uncharacterized BCR - 13 ---------d--bcefgh-n-j---- - [S] COG2350 Uncharacterized BCR - 23 ---p-----d----efg-snuj---- - [S] COG2353 Uncharacterized BCR - 8 ---------dr---efg--n-j---- - [S] COG2354 Uncharacterized BCR - 10 ---------drlb------------- - [S] COG2357 Uncharacterized BCR - 6 --------vd--b------------- SpoVS [S] COG2359 Uncharacterized BCR - 13 ---------d---cefghsn-j---- - [S] COG2377 Uncharacterized BCR - 3 -------qvd---------------- - [S] COG2380 Uncharacterized BCR - 13 --------------------u---t- - [S] COG2604 Uncharacterized BCR - 8 -o----------b-efg----j---- - [S] COG2718 Uncharacterized BCR - 8 -o----------b-efg----j---- SpoVR [S] COG2719 Uncharacterized BCR - 13 --------------e-gh--u----- EbgC [S] COG2731 Uncharacterized BCR - 6 -----------lb------------w - [S] COG2739 Uncharacterized BCR - 13 ----------rlb-ef-----j---- PhnB [S] COG2764 Uncharacterized BCR - 10 --------vdrlb-----------t- - [S] COG2815 Uncharacterized BCR - 9 ------------b-efg-sn-j---- - [S] COG2828 Uncharacterized BCR - 5 -----------------h-nu----- - [S] COG2830 Uncharacterized BCR - 8 ---------d----efgh-n------ - [S] COG2832 Uncharacterized BCR - 5 -----------------h-nu----- - [S] COG2833 Uncharacterized BCR - 14 -o---z----r---efghsn-j---- - [S] COG2835 Uncharacterized BCR - 8 -o-------------fg--nu----- - [S] COG2836 Uncharacterized BCR - 5 ---------d--b------n------ - [S] COG2839 Uncharacterized BCR - 16 --------------efghsn-j--t- - [S] COG2840 Uncharacterized BCR - 9 --------------ef-h-nu----- - [S] COG2841 Uncharacterized BCR - 5 -------------------nuj--t- - [S] COG2845 Uncharacterized BCR - 11 -------q-d-----fgh-nujx--- - [S] COG2847 Uncharacterized BCR - 9 ------------b--f---nu--i-- - [S] COG2849 Uncharacterized BCR - 9 ---------d----e--h-n-j---- - [S] COG2852 Uncharacterized BCR - 7 -------------ce-g---u---t- - [S] COG2859 Uncharacterized BCR - 10 ------------b-ef-h--uj--t- - [S] COG2861 Uncharacterized BCR - 9 ----------rlb--f--s--j---- - [S] COG2898 Uncharacterized BCR - 5 ---------drl------s------- - [S] COG2899 Uncharacterized BCR - 10 --------------efghsn-j---- SlyX [S] COG2900 Uncharacterized BCR - 9 --------------efghs---x--- - [S] COG2904 Uncharacterized BCR - 15 --------------efghsnuj---- - [S] COG2908 Uncharacterized BCR - 12 --------------efghsn-j---- - [S] COG2911 Uncharacterized BCR - 10 --------------efghsn------ - [S] COG2914 Uncharacterized BCR - 7 --------------e-g-sn------ Smg [S] COG2922 Uncharacterized BCR - 6 --------------e-gh-------- - [S] COG2926 Uncharacterized BCR - 9 -o----------b--f--sn-j-i-- - [S] COG2928 Uncharacterized BCR - 6 -------------c--g-sn------ - [S] COG2929 Uncharacterized BCR - 5 ---------d---c-f--s--j---- - [S] COG2947 Uncharacterized BCR - 4 -------q------------u----- - [S] COG2952 Uncharacterized BCR - 7 -------------c----sn-j---- - [S] COG2954 Uncharacterized BCR - 5 ---------------f--s-u----- - [S] COG2958 Uncharacterized BCR - 8 --------------efg-sn-j---- - [S] COG2960 Uncharacterized BCR - 8 -----------l--efgh--u----- - [S] COG2964 Uncharacterized BCR - 7 ------------b-e-gh--u----- - [S] COG2966 Uncharacterized BCR - 10 -o--------r-bce-g-s--j---- - [S] COG2968 Uncharacterized BCR - 8 --------------efgh-n------ - [S] COG2975 Uncharacterized BCR - 10 --------------efghsn------ - [S] COG2976 Uncharacterized BCR - 8 --------------efgh-n-j---- - [S] COG2979 Uncharacterized BCR - 8 -------q---l---fg----jxi-- - [S] COG2984 Uncharacterized BCR - 8 --------------e-gh---j---- - [S] COG2989 Uncharacterized BCR - 11 --------------e-gh-nuj---- VirK [S] COG2990 Uncharacterized BCR - 7 ---------------fgh-n------ - [S] COG2991 Uncharacterized BCR - 6 -----------lb--fg--------- - [S] COG2996 Uncharacterized BCR - 3 -------q----b---g--------- - [S] COG3002 Uncharacterized BCR - 6 --------------efg--n------ - [S] COG3009 Uncharacterized BCR - 8 ------------bc-fg-s--j---- - [S] COG3011 Uncharacterized BCR - 8 ---------d----efgh-n------ - [S] COG3012 Uncharacterized BCR - 4 ----------------g---u----- - [S] COG3014 Uncharacterized BCR - 5 ----------------g---u----- - [S] COG3018 Uncharacterized BCR - 6 ---------d----e-g----j---- - [S] COG3021 Uncharacterized BCR - 11 -----------l--efgh-nuj---- - [S] COG3022 Uncharacterized BCR - 10 --------------efgh-n-j---- - [S] COG3024 Uncharacterized BCR - 15 ------------b-efghsn-jxi-- - [S] COG3027 Uncharacterized BCR - 9 --------------efghsn------ - [S] COG3028 Uncharacterized BCR - 10 -------q------efg---uj---- - [S] COG3034 Uncharacterized BCR - 9 -----z----r----fg-------t- - [S] COG3035 Uncharacterized BCR - 6 --------------efgh-n------ - [S] COG3036 Uncharacterized BCR - 9 -----------lb-e-gh-------w SgaT [S] COG3037 Uncharacterized BCR - 9 --------------e-ghs-u----- - [S] COG3041 Uncharacterized BCR - 7 --------------efg--n-j---- CreA [S] COG3045 Uncharacterized BCR - 7 --------------e-gh-------- - [S] COG3055 Uncharacterized BCR - 5 --------------e-gh-------- - [S] COG3068 Uncharacterized BCR - 5 --------------e-gh-------- - [S] COG3074 Uncharacterized BCR - 5 --------------e-gh-------- - [S] COG3076 Uncharacterized BCR - 5 --------------e-gh-------- - [S] COG3078 Uncharacterized BCR - 7 --------------efghs------- - [S] COG3079 Uncharacterized BCR - 5 --------------e-gh-------- - [S] COG3082 Uncharacterized BCR - 5 --------------e-gh-------- - [S] COG3084 Uncharacterized BCR - 5 --------------e-gh-------- - [S] COG3085 Uncharacterized BCR - 6 --------------efgh-------- - [S] COG3089 Uncharacterized BCR - 21 ------------bcefgh---j---- - [S] COG3090 Uncharacterized BCR - 10 -----------lb-efgh-------- SprT [S] COG3091 Uncharacterized BCR - 5 --------------e-gh-------- - [S] COG3092 Uncharacterized BCR - 7 --------------e-gh-n------ - [S] COG3094 Uncharacterized BCR - 5 --------------e-gh-------- - [S] COG3097 Uncharacterized BCR - 6 --------------efgh-------- - [S] COG3098 Uncharacterized BCR - 5 --------------e-gh-------- - [S] COG3099 Uncharacterized BCR - 6 --------------efgh-------- - [S] COG3100 Uncharacterized BCR - 5 --------------e-gh-------- - [S] COG3101 Uncharacterized BCR - 6 --------------e-gh-------- - [S] COG3102 Uncharacterized BCR - 6 --------------efgh-------- - [S] COG3105 Uncharacterized BCR - 10 --------------e-gh---j---- - [S] COG3108 Uncharacterized BCR - 6 --------------e-gh-------- - [S] COG3110 Uncharacterized BCR - 5 --------------e-gh-------- - [S] COG3112 Uncharacterized BCR - 11 --------------efghsn------ - [S] COG3117 Uncharacterized BCR - 5 --------------e-gh-------- - [S] COG3120 Uncharacterized BCR - 4 --------------ef--s------- - [S] COG3122 Uncharacterized BCR - 4 --------------efg--------- - [S] COG3123 Uncharacterized BCR - 4 --------------efg--------- - [S] COG3124 Uncharacterized BCR - 5 --------------efg----j---- - [S] COG3126 Uncharacterized BCR - 5 --------------efg----j---- - [S] COG3132 Uncharacterized BCR - 4 --------------efg--------- - [S] COG3139 Uncharacterized BCR - 5 --------------e-gh-------- - [S] COG3140 Uncharacterized BCR - 4 --------------efg--------- - [S] COG3141 Uncharacterized BCR - 5 -------------c-f--s--j---- - [S] COG3146 Uncharacterized BCR - 5 --------------efg-s------- DedD [S] COG3147 Uncharacterized BCR - 5 --------------efg-s------- - [S] COG3151 Uncharacterized BCR - 7 --------------efghs--j---- - [S] COG3159 Uncharacterized BCR - 6 --------------efghs------- - [S] COG3165 Uncharacterized BCR - 4 ---------d-----fg-s------- - [S] COG3169 Uncharacterized BCR - 8 --------------ef-h-n------ - [S] COG3171 Uncharacterized BCR - 15 -o-----q------ef-h-nuj---- - [S] COG3177 Uncharacterized BCR - 4 ------------b--fg--------- - [S] COG3181 Uncharacterized BCR - 5 ---------------f--sn-j---- - [S] COG3184 Uncharacterized BCR - 7 ---p------r---ef-----j---- - [S] COG3189 Uncharacterized BCR - 6 ---------d--b--f-----j---- - [S] COG3195 Uncharacterized BCR - 3 ----------r---ef---------- - [S] COG3196 Uncharacterized BCR - 4 ---------------fg--n------ - [S] COG3198 Uncharacterized BCR - 7 -------------cef---------- - [S] COG3204 Uncharacterized BCR - 6 ---------d----ef-----j---- - [S] COG3214 Uncharacterized BCR - 5 -------------c-fg----j---- - [S] COG3216 Uncharacterized BCR - 5 ---------------f--s-uj---- - [S] COG3218 Uncharacterized BCR - 6 ---------------f-h-n------ - [S] COG3219 Uncharacterized BCR - 8 ---------------f-h-n-j---- - [S] COG3220 Uncharacterized BCR - 3 ----------r--c-f---------- - [S] COG3222 Uncharacterized BCR - 4 ---------d---c-f---------- - [S] COG3224 Uncharacterized BCR - 4 ---------------f--------t- - [S] COG3225 Uncharacterized BCR - 5 ----------r---ef---------- - [S] COG3226 Uncharacterized BCR - 4 -------------cef---------- - [S] COG3228 Uncharacterized BCR - 4 --------v-----ef---------- - [S] COG3234 Uncharacterized BCR - 3 ---------d----ef---------- - [S] COG3236 Uncharacterized BCR - 11 -----------lb-ef-----j---- - [S] COG3237 Uncharacterized BCR - 9 ---------d-l--ef-h---j---- - [S] COG3238 Uncharacterized BCR - 4 --------------efg-s------- - [S] COG3242 Uncharacterized BCR - 9 ----------rl--ef-----j---- HdeD [S] COG3247 Uncharacterized BCR - 4 ---------------fg-s--j---- - [S] COG3249 Uncharacterized BCR - 4 ----------r-b-ef---------- - [S] COG3251 Uncharacterized BCR - 5 --------------efg----j---- - [S] COG3263 Uncharacterized BCR - 5 --------------efg--------- DamX [S] COG3266 Uncharacterized BCR - 4 --------------e-g-----x--- - [S] COG3274 Uncharacterized BCR - 4 ---------d------g-s--j---- - [S] COG3295 Uncharacterized BCR - 3 ---------d---c-f---------- - [S] COG3296 Uncharacterized BCR - 4 ----------------g-sn------ - [S] COG3310 Uncharacterized BCR - 8 ------------b-e-g--------- - [S] COG3314 Uncharacterized BCR - 6 ----------r-b--f---------- - [S] COG3323 Uncharacterized BCR - 3 --------v---bc------------ - [S] COG3330 Uncharacterized BCR - 5 ------------b--fgh-------- - [S] COG3333 Uncharacterized BCR - 8 -------q----b-------uj---- - [S] COG3334 Uncharacterized BCR - 3 a------q----b------------- - [S] COG3337 Uncharacterized BCR - 5 ------------b-e-g----j---- - [S] COG3394 Uncharacterized BCR - 6 ------------bce--h---j---- - [S] COG3395 Uncharacterized BCR - 6 ---------d--b-e----------- - [S] COG3396 Uncharacterized BCR - 5 -----------lb--fg--------- - [S] COG3397 Uncharacterized BCR - 5 -------------------nu----- - [S] COG3399 Uncharacterized BCR - 4 -------q------------u----- - [S] COG3400 Uncharacterized BCR - 6 ---------d-lb-e------j---- - [S] COG3412 Uncharacterized BCR - 3 --------------ef--s------- - [S] COG3416 Uncharacterized BCR - 4 -----------------h-nu----- - [S] COG3421 Uncharacterized BCR - 9 --------------ef-h-n-j---- - [S] COG3422 Uncharacterized BCR - 6 ------------------sn-j---- - [S] COG3453 Uncharacterized BCR - 7 --------------efg----j---- - [S] COG3455 Uncharacterized BCR - 4 -om-----v----------------- - [S] COG3472 Uncharacterized BCR - 4 --m-------r----------j---- - [S] COG3482 Uncharacterized BCR - 3 ---------------fg----j---- - [S] COG3490 Uncharacterized BCR - 4 ---------------fg----j---- - [S] COG3492 Uncharacterized BCR - 4 -------q-------------jx--- - [S] COG3494 Uncharacterized BCR - 4 ---------------fg----j---- - [S] COG3495 Uncharacterized BCR - 18 --------------efg----j---- VgrG [S] COG3501 Uncharacterized BCR - 4 ---------dr----------j---- - [S] COG3502 Uncharacterized BCR - 4 -----------l-----h-nu----- - [S] COG3512 Uncharacterized BCR - 4 -----------l-----h-nu----- - [S] COG3513 Uncharacterized BCR - 5 ------------------sn-j---- - [S] COG3514 Uncharacterized BCR - 7 --------------efg----j---- - [S] COG3515 Uncharacterized BCR - 6 --------------efg----j---- - [S] COG3516 Uncharacterized BCR - 6 --------------efg----j---- - [S] COG3517 Uncharacterized BCR - 6 --------------efg----j---- - [S] COG3518 Uncharacterized BCR - 6 --------------efg----j---- - [S] COG3519 Uncharacterized BCR - 6 --------------efg----j---- - [S] COG3520 Uncharacterized BCR - 5 --------------efg----j---- - [S] COG3521 Uncharacterized BCR - 6 --------------efg----j---- - [S] COG3522 Uncharacterized BCR - 7 --------------efg----j---- IcmF [S] COG3523 Uncharacterized BCR - 4 --------------e-g---u----- - [S] COG3528 Uncharacterized BCR - 3 --------------efg--------- - [S] COG3530 Uncharacterized BCR - 5 --------v---b-e------j---- - [S] COG3533 Uncharacterized BCR - 5 ---------------f---n-j---- - [S] COG3536 Uncharacterized BCR - 4 ---------d---c-------j---- - [S] COG3544 Uncharacterized BCR - 3 ------------b--f-----j---- - [S] COG3551 Uncharacterized BCR - 4 ---------------fg----j---- - [S] COG3553 Uncharacterized BCR - 4 ----------r----f-----j---- - [S] COG3554 Uncharacterized BCR - 3 -------------c-f-----j---- - [S] COG3558 Uncharacterized BCR - 3 ----------r-b--------j---- - [S] COG3564 Uncharacterized BCR - 4 -----------------hs--j---- - [S] COG3566 Uncharacterized BCR - 4 -----------------hs--j---- - [S] COG3567 Uncharacterized BCR - 5 ---------d-l----g----j---- - [S] COG3575 Uncharacterized BCR - 3 -------qv--l-------------- - [S] COG3580 Uncharacterized BCR - 3 -------qv--l-------------- - [S] COG3581 Uncharacterized BCR - 10 --------vd-lb------------- - [S] COG3584 Uncharacterized BCR - 4 --------------e--h--u----- - [S] COG3586 Uncharacterized BCR - 5 -----------lb-----------t- - [S] COG3589 Uncharacterized BCR - 4 -----------l--e------j---- - [S] COG3592 Uncharacterized BCR - 8 ----k------lb------------- - [S] COG3595 Uncharacterized BCR - 4 ---------------fg----j---- - [S] COG3602 Uncharacterized BCR - 7 ------------b-e-gh--u----- - [S] COG3610 Uncharacterized BCR - 3 ---------d-----f-----j---- - [S] COG3644 Uncharacterized BCR - 3 --------v--lb------------- - [S] COG3649 Uncharacterized BCR - 3 ----------r--c-------j---- - [S] COG3651 Uncharacterized BCR - 6 -----------------hs--j---- - [S] COG3657 Uncharacterized BCR - 6 ----------r----f-----j---- - [S] COG3662 Uncharacterized BCR - 4 ---------d--b--------j---- - [S] COG3665 Uncharacterized BCR - 4 ---------d----e----n------ - [S] COG3680 Uncharacterized BCR - 10 --------------ef-----j---- - [S] COG3685 Uncharacterized BCR - 8 --------------e-gh-------- - [S] COG3691 Uncharacterized BCR - 5 --------------e--h-n-j---- - [S] COG3692 Uncharacterized BCR - 12 ------------b--f-h---j---- - [S] COG3708 Uncharacterized BCR - 6 --------------e-g----j--t- - [S] COG3735 Uncharacterized BCR - 5 --------------ef-h---j---- - [S] COG3738 Uncharacterized BCR - 7 ----------r----------j---- - [S] COG3742 Uncharacterized BCR - 6 -o-------------------j---- - [S] COG3743 Uncharacterized BCR - 6 ----------r--c-----n------ - [S] COG3744 Uncharacterized BCR - 4 ---------------f-----j---- - [S] COG3749 Uncharacterized BCR - 4 ---------------------jx--- - [S] COG3750 Uncharacterized BCR - 7 --------------ef-----j---- - [S] COG3753 Uncharacterized BCR - 9 ---------d----ef-----j---- - [S] COG3755 Uncharacterized BCR - 6 --------------e---s--j---- - [S] COG3756 Uncharacterized BCR - 5 -----------l--ef-----j---- - [S] COG3758 Uncharacterized BCR - 7 -----------lb------------w - [S] COG3763 Uncharacterized BCR - 5 --------------e--h-n------ - [S] COG3778 Uncharacterized BCR - 5 --------------e----n-j---- - [S] COG3779 Uncharacterized BCR - 4 ---------------fg--n------ - [S] COG3782 Uncharacterized BCR - 4 --------------ef-----j---- - [S] COG3784 Uncharacterized BCR - 4 ----------r----------j---- - [S] COG3786 Uncharacterized BCR - 4 --------------e--h--u----- - [S] COG3787 Uncharacterized BCR - 4 --------------ef-----j---- - [S] COG3789 Uncharacterized BCR - 17 -----------------hsn------ - [S] COG3792 Uncharacterized BCR - 10 ---------------f-----j---- - [S] COG3795 Uncharacterized BCR - 7 ---------------f-----j---- - [S] COG3796 Uncharacterized BCR - 4 ----------r----------j---- - [S] COG3797 Uncharacterized BCR - 4 ---------d-----------j---- - [S] COG3798 Uncharacterized BCR - 4 ----------r----------j---- - [S] COG3801 Uncharacterized BCR - 4 ---------------f-----j---- GguC [S] COG3802 Uncharacterized BCR - 4 ---------------f-----j---- - [S] COG3803 Uncharacterized BCR - 3 ---------------------jx--- - [S] COG3807 Uncharacterized BCR - 3 --------------------uj---- - [S] COG3809 Uncharacterized BCR - 3 ---------------f-----j---- - [S] COG3811 Uncharacterized BCR - 3 ---------------f-----j---- - [S] COG3812 Uncharacterized BCR - 3 ---------------f-----j---- - [S] COG3813 Uncharacterized BCR - 3 ---------------------jx--- - [S] COG3814 Uncharacterized BCR - 3 ---------------f-----j---- - [S] COG3816 Uncharacterized BCR - 3 ---------------------jx--- - [S] COG3820 Uncharacterized BCR - 4 ------------b-e--h---j---- - [S] COG3822 Uncharacterized BCR - 3 ----------r----------j---- - [S] COG3824 Uncharacterized BCR - 3 ---------------f-----j---- - [S] COG3825 Uncharacterized BCR - 3 ----------r----------j---- - [S] COG3826 Uncharacterized BCR - 3 ---------------------jx--- - [S] COG3827 Uncharacterized BCR - 3 ------------b--------j---- - [S] COG3828 Uncharacterized BCR - 14 ----------r-b--------j---- - [S] COG3832 Uncharacterized BCR - 6 -----------------hsnu----- VapD [S] COG3309 Uncharacterized BCR (virulence-associated protein D) - 10 --------v---b--f----uj--t- - [S] COG2257 Uncharacterized BCR homologous to the cytoplasmic domain of flagellar protein FhlB - 4 -----------------------it- - [S] COG1747 Uncharacterized BCR, N-terminal domain of the transcription elongation factor GreA (in T. pallidum, a separate protein). - 6 ---------d-lbc------------ - [S] COG2302 Uncharacterized BCR, contains S4-like domain - 5 -----------lb----h---j---- - [S] COG3739 Uncharacterized BCR, integral membrane protein - 4 --------------e-gh-------- - [S] COG3790 Uncharacterized BCR, predicted membrane protein - 7 ----------r----fg----j---- - [S] COG3176 Uncharacterized BCR, putative hemolysin - 3 ---------dr--c------------ - [S] COG3429 Uncharacterized BCR, stimulates glucose-6-P dehydrogenase activity - 6 ---------d--b--f---------- - [S] COG2720 Uncharacterized BCR, vancomycin resistance protein - 6 aom-k--------------------- - [S] COG1326 Uncharacterized archaeal Zn-finger family - 8 aompkz-------------------- - [S] COG1340 Uncharacterized archaeal coiled-coil domain - 3 a-m----------------------- - [S] COG1795 Uncharacterized archaeal domain - 7 a-m-kz-------------------- - [S] COG2034 Uncharacterized archaeal membrane protein - 8 --------------efgh-n------ HemX [S] COG2959 Uncharacterized enzyme of heme biosynthesis - 9 ------------b-e--hsn------ XkdT [S] COG3299 Uncharacterized homolog of phage Mu protein gp47 - 15 ------------b--fg--n-j---- PiuB [S] COG3182 Uncharacterized iron-regulated membrane protein - 4 -------q-------fg---u----- PhuW [S] COG3016 Uncharacterized iron-regulated protein - 6 --------------ef--s--j---- PiuC [S] COG3128 Uncharacterized iron-regulated protein - 6 ---------------f-h-n------ - [S] COG3767 Uncharacterized low-complexity protein - 43 -o-------drlbcef-h---jx-t- - [S] COG1357 Uncharacterized low-complexity proteins - 7 ------------bcefg--------- SpmB [S] COG0700 Uncharacterized membrane protein - 20 --m----q------efghsnujx--- - [S] COG1238 Uncharacterized membrane protein - 16 -------q-drlbcef-h------t- SapB [S] COG1285 Uncharacterized membrane protein - 8 -----------lb-e--h---j--t- - [S] COG1288 Uncharacterized membrane protein - 32 ---------d--bcefghsnuj---- - [S] COG1289 Uncharacterized membrane protein - 12 -o--k-y---r----f-hsnuj---- - [S] COG1297 Uncharacterized membrane protein - 17 a-m-kz----r-bc-f-----j---- SpoIIM [S] COG1300 Uncharacterized membrane protein - 9 aompk--------------------- - [S] COG1422 Uncharacterized membrane protein - 5 --m-kz--v----------------- - [S] COG2245 Uncharacterized membrane protein - 19 ao-pkz----r-bce------j---- - [S] COG2246 Uncharacterized membrane protein - 6 -o--k----d--b------------- - [S] COG2339 Uncharacterized membrane protein - 5 a---kz------b------------- - [S] COG2426 Uncharacterized membrane protein - 10 ----kz--------e-gh-n------ - [S] COG2431 Uncharacterized membrane protein - 8 ------------b-e--h-n------ - [S] COG2707 Uncharacterized membrane protein - 8 ---------d----ef-h--uj--t- - [S] COG2717 Uncharacterized membrane protein - 5 ----------r---e---s--j---- - [S] COG2733 Uncharacterized membrane protein - 13 a----------l--ef-h-nuj---- - [S] COG2855 Uncharacterized membrane protein - 14 -------q-d----efgh--uj---- - [S] COG2862 Uncharacterized membrane protein - 8 ---------d----e-gh-------- SanA [S] COG2949 Uncharacterized membrane protein - 6 --------------e-gh--u----- - [S] COG3059 Uncharacterized membrane protein - 6 --------------efg----j---- - [S] COG3127 Uncharacterized membrane protein - 4 --------------ef--s------- - [S] COG3134 Uncharacterized membrane protein - 17 --------------efg----j---- - [S] COG3152 Uncharacterized membrane protein - 6 ---------d--b-ef--s------- - [S] COG3162 Uncharacterized membrane protein - 5 --------------efg-s------- - [S] COG3164 Uncharacterized membrane protein - 8 -om--z-q-------f-----j---- - [S] COG3174 Uncharacterized membrane protein - 6 -o-------------fg--n-j---- - [S] COG3205 Uncharacterized membrane protein - 12 ------------b--fg--n-j---- - [S] COG3212 Uncharacterized membrane protein - 5 ------------b-ef-h-------- - [S] COG3223 Uncharacterized membrane protein - 6 ---------------f-h-n-j---- - [S] COG3229 Uncharacterized membrane protein - 4 ---------------fg--n------ - [S] COG3235 Uncharacterized membrane protein - 6 ----------r---e-gh---j---- - [S] COG3304 Uncharacterized membrane protein - 3 ----------r-----g-s------- - [S] COG3305 Uncharacterized membrane protein - 4 ---------------fg--n------ - [S] COG3308 Uncharacterized membrane protein - 7 ---pk--------c------------ - [S] COG3463 Uncharacterized membrane protein - 6 ----k---v--lb------------- - [S] COG3601 Uncharacterized membrane protein - 7 ----------rlbc-f-----j---- - [S] COG3619 Uncharacterized membrane protein - 4 ---------------f---n-j---- - [S] COG3686 Uncharacterized membrane protein - 7 ----------r---e-g----j---- - [S] COG3714 Uncharacterized membrane protein - 4 ---------------f-----j---- - [S] COG3748 Uncharacterized membrane protein - 4 ----------rl---------j---- - [S] COG3752 Uncharacterized membrane protein - 3 ---------------f-----j---- - [S] COG3821 Uncharacterized membrane protein - 32 --m-------r-bc-fgh-nujx--- - [S] COG1714 Uncharacterized membrane protein/domain - 20 a-mpkzy-vd-l---f-----j---- - [S] COG1814 Uncharacterized membrane proteins - 57 ---p-----drlbcefghsnuj--t- DedA [S] COG0586 Uncharacterized membrane-associated protein - 9 a--pkz-------------------- - [S] COG2512 Uncharacterized membrane-associated protein/domain - 3 -------q-d---c------------ - [S] COG2389 Uncharacterized metal-binding protein - 10 --------------e-gh-n------ PqiA [S] COG2995 Uncharacterized paraquat-inducible protein A - 5 ---------------fg-s------- - [S] COG3007 Uncharacterized paraquat-inducible protein B - 8 -------------cefg--n------ Spy [S] COG3678 Uncharacterized periplasmic protein - 5 ----------rl--e----------- - [S] COG3747 Uncharacterized phage protein - 6 -----------l------s--j---w GepA [S] COG3600 Uncharacterized phage-associated protein - 6 -----------lb-e----------- - [S] COG3645 Uncharacterized phage-encoded protein - 5 -----------lb----h-------- - [S] COG3646 Uncharacterized phage-encoded protein - 20 ---------d--b-efghsn-j--t- XkdP [S] COG1652 Uncharacterized protein containing LysM domain - 6 ---------d-l------------t- - [S] COG2348 Uncharacterized protein involved in methicillin resistance - 18 a-----y--d--b--f-----j--t- - [S] COG2340 Uncharacterized protein with SCP/PR1 domains - 9 --m------d-------hsn------ - [S] COG2369 Uncharacterized protein, homolog of phage Mu protein gp30 - 3 -------qv-r--------------- - [S] COG1659 Uncharacterized protein, linocin/CFP29 homolog - 5 ---------d----ef-----j---- GlxB [S] COG3257 Uncharacterized protein, possibly involved in glyoxylate utilization - 10 ---------------fg--nuj---- FixS [S] COG3197 Uncharacterized protein, possibly involved in nitrogen fixation - 6 --------------e--h-n------ TehB [S] COG3615 Uncharacterized protein, possibly involved in tellurite resistance - 9 -------------cef-----j---- GlcG [S] COG3193 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol - 4 ---------d-l-c------u----- - [S] COG3597 Uncharacterized protein/domain associated with GTPases - 34 aom-k---vdr-b-efg-s--jx-t- - [S] COG1520 Uncharacterized proteins of WD40-like repeat family - 19 ----k-y--dr-b--------j---- - [S] COG2120 Uncharacterized proteins, LmbE homologs - 17 ---p-----d-lbcefg--n--x-t- LdcA [S] COG1619 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF - 4 --------------efg--------- ElbB [S] COG3155 Uncharacterized sigma cross-reacting protein 27A (ES1 or KNP-I alpha protein) - 10 ---------d--b-efgh---j---- - [S] COG2363 Uncharacterized small membrane protein - 7 --------------ef---nu----- - [S] COG2879 Uncharacterized small protein - 17 -------qv---b-efghsn-j--t- - [S] COG1561 Uncharacterized stress-induced protein