3307 COGs Select Help

-  22 --m-k---vd-lb-efgh---j----  RsmC   [J]   COG2813 16S RNA G1207 methylase RsmC
-  64 -------qvdrlbcefghsnujxit-  RsuA   [J]   COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases
-  21 a-mpkz-qvd--b-ef-----j----  LigT   [J]   COG1514 2'-5' RNA ligase
-  59 aompkz-qvdr-bcefghsnujxit-  MiaB   [J]   COG0621 2-methylthioadenine synthetase
-  99 -o-pk-y-vdrlb-efgh-nujx--w  RimL   [J]   COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins
-  43 aompkzyqvdrlbcefghsnujxitw  AlaS   [J]   COG0013 Alanyl-tRNA synthetase
-   5 ---------drl---f-----j----  Aph    [J]   COG3231 Aminoglycoside phosphotransferase
-   9 aompkz--------------------  GatE   [J]   COG2511 Archaeal Glu-tRNAGln amidotransferase subunit E (contains GAD domain)
-  45 aompkzyqvdrlbcefghsnujxitw  ArgS   [J]   COG0018 Arginyl-tRNA synthetase
-  66 aom--zyqvdrlbc-f---nujxitw  GatA   [J]   COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases
-  33 aom--zyqvdrlbc-f---nujxitw  GatB   [J]   COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog)
-  30 aom--z-qvdrlbc-f---nujxitw  GatC   [J]   COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit
-  34 ------yqvdrlbcefghsnujxitw  AspS   [J]   COG0173 Aspartyl-tRNA synthetase
-  40 aompkzy--d-lbce-ghs-----tw  AsnS   [J]   COG0017 Aspartyl/asparaginyl-tRNA synthetases
-  43 ao-pkzyqvdrlbcefghsnujxitw  CysS   [J]   COG0215 Cysteinyl-tRNA synthetase
-  17 ------yqvdrlb-efgh-n------  Dtd    [J]   COG1490 D-Tyr-tRNAtyr deacylase
-  12 aompkzy--------------j----  DYS1   [J]   COG1899 Deoxyhypusine synthase
-  49 aompkzyqvdrlbcefghsnujxitw  KsgA   [J]   COG0030 Dimethyladenosine transferase (rRNA methylation)
-  10 aompkzy-------------------  DPH5   [J]   COG1798 Diphthamide biosynthesis methyltransferase DPH5
-  11 aompkzy-------------------  DPH2   [J]   COG1736 Diphthamide synthase subunit DPH2
-  10 aompkzy-------------------  TIF6   [J]   COG1976 Eukaryotic translation initiation factor 6 (EIF6)
-  10 aompkzy-------------------  NOP1   [J]   COG1889 Fibrillarin-like rRNA methylase
-  78 aompkzyqvdrlbcefghsnujxitw  TufB   [JE]  COG0050 GTPases - translation elongation factors
-  71 aompkzyqvdrlbcefghsnujxitw  GlnS   [J]   COG0008 Glutamyl- and glutaminyl-tRNA synthetases
-  25 -------qv--lbcefghsnujxi--  GlyQ   [J]   COG0752 Glycyl-tRNA synthetase, alpha subunit
-  25 -------qv--lbcefghsnujxi--  GlyS   [J]   COG0751 Glycyl-tRNA synthetase, beta subunit
-  19 aompkzy--dr-------------tw  GRS1   [J]   COG0423 Glycyl-tRNA synthetase, class II
-  49 aompkzyqvdrlbcefghsnujxitw  HisS   [J]   COG0124 Histidyl-tRNA synthetase
-   3 a-m----q------------------   -     [J]   COG1431 Homologs of the eukaryotic argonaute protein, possible role in translation
-  44 aompkzyqvdrlbcefghsnujxitw  IleS   [J]   COG0060 Isoleucyl-tRNA synthetase
-  45 aompkzyqvdrlbcefghsnujxitw  LeuS   [J]   COG0495 Leucyl-tRNA synthetase
-  14 aompkz---------------jx-t-  LysS   [J]   COG1384 Lysyl-tRNA synthetase class I
-  35 ------yqvdrlbcefghsnu--i-w  LysU   [J]   COG1190 Lysyl-tRNA synthetase class II
-  51 aompkzyqvdrlbcefghsnujxitw  Map    [J]   COG0024 Methionine aminopeptidase
-  39 ------yqvdrlbcefghsnujxitw  Fmt    [J]   COG0223 Methionyl-tRNA formyltransferase
-  45 aompkzyqvdrlbcefghsnujxitw  MetG   [J]   COG0143 Methionyl-tRNA synthetase
-  25 aomp--y-------efghsn-jx-t-  FtsJ   [J]   COG0293 Methyltransferase involved in cell division
-  37 -------qvdrlbcefghsnujxitw  Def    [J]   COG0242 N-formylmethionyl-tRNA deformylase
-  11 aompkzyq------------------  TRM1   [J]   COG1867 N2,N2-dimethylguanosine tRNA methyltransferase
-  11 aompkzy-------------------  NMD3   [J]   COG1499 NMD protein affecting ribosome stability and mRNA decay
-  14 aompkzy-------------------   -     [J]   COG2016 PUA domain (predicted RNA-binding domain)
-  11 aompkzyq------------------  eRF1   [J]   COG1503 Peptide chain release factor eRF1
-  34 ------yqvdrlbcefghsnujxitw  Pth    [J]   COG0193 Peptidyl-tRNA hydrolase
-  44 aompkzyqvdrlbcefghsnujxitw  PheS   [J]   COG0016 Phenylalanyl-tRNA synthetase alpha subunit
-   3 a-m-----------------------   -     [J]   COG2024 Phenylalanyl-tRNA synthetase alpha subunit, archaeal type
-  44 aompkzyqvdrlbcefghsnujxitw  PheT   [J]   COG0072 Phenylalanyl-tRNA synthetase beta subunit
-  30 -------qvdrlbcefghsnujxit-  Pnp    [J]   COG1185 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase)
-   9 aompkz--------------------   -     [J]   COG2263 Predicted RNA methylase
-   9 aompkz--------------------   -     [J]   COG1491 Predicted RNA-binding protein
-   7 a-mpkz--------------------   -     [J]   COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain)
-  20 aom-kz-----lb-efghsn------   -     [J]   COG1534 Predicted RNA-binding protein containing KH domain, possibly ribosomal protein
-  14 aompkzyqv-r---------------  GCD14  [J]   COG2519 Predicted SAM-dependent methyltransferase involved in tRNA-Met maturation
-  10 aompkzy-------------------   -     [J]   COG2260 Predicted Zn-ribbon RNA-binding protein
-   9 aompkz--------------------   -     [J]   COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation
-  19 aompkzy--d---c-fg----j----  YSH1   [J]   COG1236 Predicted exonuclease of the beta-lactamase fold involved in RNA processing
-   7 aom-kz--------------------   -     [J]   COG1325 Predicted exosome subunit
-  10 aompkzy-------------------   -     [J]   COG1500 Predicted exosome subunit
-   9 aompkz--------------------   -     [J]   COG1258 Predicted pseudouridylate synthase
-  26 ---------drlbcefghsnuj-i-w  CspR   [J]   COG0219 Predicted rRNA methylase (SpoU class)
-  18 a------qv-rlbc------ujx-tw   -     [J]   COG1189 Predicted rRNA methylases
-  56 aompk-yqvdrlbcefghsnujxitw  HemK   [J]   COG2890 Predicted rRNA or tRNA methylase
-  10 --------v--lb-----------tw   -     [J]   COG2868 Predicted ribosomal protein
-   5 -om-k---------------------   -     [J]   COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain
-  38 ------yqvdrlbcefghsnujxitw  TrmU   [J]   COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain
-  44 aompkzyqvdrlbcefghsnujxitw  ProS   [J]   COG0442 Prolyl-tRNA synthetase
-  34 ------yqvdrlbcefghsnujxitw  PrfA   [J]   COG0216 Protein chain release factor A
-  39 ------yqvdrlbcefghsnujxit-  PrfB   [J]   COG1186 Protein chain release factor B
-   8 a-m-kzy-------------------  IMP4   [J]   COG2136 Protein containing the IMP4 domain present in small nuclear ribonucleoproteins; implicated in RNA processing
-  12 aompkzy-------------------  SIK1   [J]   COG1498 Protein implicated in ribosomal biogenesis, Nop56p homolog
-   6 a-m-kzy-------------------  NIP7   [J]   COG1374 Protein involved in ribosomal biogenesis, contains PUA domain
-  42 aompkzyqvdrlbcefghsnujxitw  TruB   [J]   COG0130 Pseudouridine synthase
-  44 aompk-yqvdrlbcefghsnujxitw  TruA   [J]   COG0101 Pseudouridylate synthase (tRNA psi55)
-  97 ------yqvdrlbcefghsnujxitw  RluA   [J]   COG0564 Pseudouridylate synthases, 23S RNA-specific
-  53 aompkzyqvdrlbcefghsn-jxitw  SUA5   [J]   COG0009 Putative translation factor (SUA5)
-  74 -o--kzyqvdrlbcefghsnuj----  TdcF   [J]   COG0251 Putative translation initiation inhibitor
-   8 aompk---------------------   -     [J]   COG1549 Queuine tRNA-ribosyltransferases, contain PUA domain
-  38 aompkz-qvd-lbcefghsnujxit-  Tgt    [J]   COG0343 Queuine/archaeosine tRNA-ribosyltransferase
-   9 a-mpkzy-------------------  RRP4   [J]   COG1097 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain)
-  10 aompkzy-------------------  GAR1   [J]   COG3277 RNA-binding protein involved in rRNA processing
-  12 a--pkzy--d----ef----------  KptA   [J]   COG1859 RNA:NAD 2'-phosphotransferase
-  10 aompkzy-------------------  POP4   [J]   COG1588 RNAse P protein subunit P29
-  10 aompkzy-------------------  RPR2   [J]   COG2023 RNAse P protein subunit RPR2
-  32 --------vdrlbcefghsnujxitw  RnpA   [J]   COG0594 RNase P protein component
-   8 aom-kzy-------------------  POP5   [J]   COG1369 RNase P subunit P14 and its archaeal orthologs
-  28 a-mpkzyq-dr-b-efghsn-jx---  Rph    [J]   COG0689 RNase PH
-   9 a-mpkzy-------------------   -     [J]   COG2123 RNase PH-related exoribonuclease
-  17 ------y---r--cefghs--jx---  Rnd    [J]   COG0349 Ribonuclease D
-   6 --------------e--h---j----  Rna    [J]   COG3719 Ribonuclease I
-   8 aom-kzy-------------------   -     [J]   COG1603 Ribonuclease P subunit Rpp30
-  36 -o--kz-qv-r-bcefghsnujxi--  CafA   [J]   COG1530 Ribonucleases G and E
-  21 aompkzy-v--lb-------------  RPL8A  [J]   COG1358 Ribosomal protein HS6-type (S12/L30/L7a)
-  45 aompkzyqvdrlbcefghsnujxitw  RplA   [J]   COG0081 Ribosomal protein L1
-  45 aompkzyqvdrlbcefghsnujxitw  RplJ   [J]   COG0244 Ribosomal protein L10
-  46 aompkzyqvdrlbcefghsnujxitw  RplK   [J]   COG0080 Ribosomal protein L11
-  22 -------qvd-lbcefghsnuj----  PrmA   [J]   COG2264 Ribosomal protein L11 methylase
-  13 aompkzy-------------------  RPP1A  [J]   COG2058 Ribosomal protein L12E/L44/L45/RPP1/RPP2
-  45 aompkzyqvdrlbcefghsnujxitw  RplM   [J]   COG0102 Ribosomal protein L13
-  45 aompkzyqvdrlbcefghsnujxitw  RplN   [J]   COG0093 Ribosomal protein L14
-   7 --m-kzy-------------------  RPL14A [J]   COG2163 Ribosomal protein L14E
-  44 aompkzyqvdrlbcefghsnujxitw  RplO   [J]   COG0200 Ribosomal protein L15
-  11 aompkzy-------------------  RPL15A [J]   COG1632 Ribosomal protein L15E
-  44 aompkzyqvdrlbcefghsnujxitw  RplP   [J]   COG0197 Ribosomal protein L16/L10E
-  34 ------yqvdrlbcefghsnujxitw  RplQ   [J]   COG0203 Ribosomal protein L17
-  43 aompkzyqvdrlbcefghsnujxitw  RplR   [J]   COG0256 Ribosomal protein L18
-  11 aompkzy-------------------  RPL18A [J]   COG1727 Ribosomal protein L18E
-  34 ------yqvdrlbcefghsnujxitw  RplS   [J]   COG0335 Ribosomal protein L19
-  11 aompkzy-------------------  RPL19A [J]   COG2147 Ribosomal protein L19E
-  45 aompkzyqvdrlbcefghsnujxitw  RplB   [J]   COG0090 Ribosomal protein L2
-  33 -------qvdrlbcefghsnujxitw  RplT   [J]   COG0292 Ribosomal protein L20
-   8 a-m-kzy-------------------  RPL20A [J]   COG2157 Ribosomal protein L20A (L18A)
-  33 -------qvdrlbcefghsnujxitw  RplU   [J]   COG0261 Ribosomal protein L21
-  11 aompkzy-------------------  RPL21A [J]   COG2139 Ribosomal protein L21E
-  45 aompkzyqvdrlbcefghsnujxitw  RplV   [J]   COG0091 Ribosomal protein L22
-  43 aompkzyqvdrlbcefghsnujxitw  RplW   [J]   COG0089 Ribosomal protein L23
-  44 aompkzyqvdrlbcefghsnujxitw  RplX   [J]   COG0198 Ribosomal protein L24
-  12 aompkzy-------------------  RPL24A [J]   COG2075 Ribosomal protein L24E
-  28 -------qvdr-bcefghsnujxit-  RplY   [J]   COG1825 Ribosomal protein L25 (general stress protein Ctc)
-  34 ------yqvdrlbcefghsnujxitw  RpmA   [J]   COG0211 Ribosomal protein L27
-  34 ------yqvdrlbcefghsnujxitw  RpmB   [J]   COG0227 Ribosomal protein L28
-  44 aompkzyqvdrlbcefghsnujxitw  RpmC   [J]   COG0255 Ribosomal protein L29
-  44 aompkzyqvdrlbcefghsnujxitw  RplC   [J]   COG0087 Ribosomal protein L3
-  37 aompkzyqvdrlb-efghsn-jx-t-  RpmD   [J]   COG1841 Ribosomal protein L30/L7E
-   7 a-m-kzy-------------------  RPL30  [J]   COG1911 Ribosomal protein L30E
-  43 -------qvdrlbcefghsnujxitw  RpmE   [J]   COG0254 Ribosomal protein L31
-  11 aompkzy-------------------  RPL31A [J]   COG2097 Ribosomal protein L31E
-  32 ------yqvd-lbcefghsnujxitw  RpmF   [J]   COG0333 Ribosomal protein L32
-  10 aompkzy-------------------  RPL32  [J]   COG1717 Ribosomal protein L32E
-  40 ------yqvdrlbcefghsnujxitw  RpmG   [J]   COG0267 Ribosomal protein L33
-  34 ------yqvdrlbcefghsnujxitw  RpmH   [J]   COG0230 Ribosomal protein L34
-   7 --m-kzy-------------------  RPL34A [J]   COG2174 Ribosomal protein L34E
-  34 ------yqvdrlbcefghsnujxitw  RpmI   [J]   COG0291 Ribosomal protein L35
-   5 ----kzy-------------------   -     [J]   COG2451 Ribosomal protein L35AE/L33A
-  38 ------yqvdrlbcefghsnujxitw  RpmJ   [J]   COG0257 Ribosomal protein L36
-  11 aompkzy-------------------  RPL43A [J]   COG1997 Ribosomal protein L37AE/L43A
-  11 aompkzy-------------------  RPL37A [J]   COG2126 Ribosomal protein L37E
-  10 aompkzy-------------------  RPL39  [J]   COG2167 Ribosomal protein L39E
-  45 aompkzyqvdrlbcefghsnujxitw  RplD   [J]   COG0088 Ribosomal protein L4
-  11 aompkzy-------------------  RPL40A [J]   COG1552 Ribosomal protein L40E
-  11 aompkzy-------------------  RPL42A [J]   COG1631 Ribosomal protein L44E
-  45 aompkzyqvdrlbcefghsnujxitw  RplE   [J]   COG0094 Ribosomal protein L5
-  45 aompkzyqvdrlbcefghsnujxitw  RplF   [J]   COG0097 Ribosomal protein L6
-  35 ------yqvdrlbcefghsnujxitw  RplL   [J]   COG0222 Ribosomal protein L7/L12
-  33 -------qvdrlbcefghsnujxitw  RplI   [J]   COG0359 Ribosomal protein L9
-  33 ------yqvdrlbcefghsnujxit-  RpsA   [J]   COG0539 Ribosomal protein S1
-   9 ------y-vd-lb-------------  VacB   [J]   COG1098 Ribosomal protein S1 domains
-  45 aompkzyqvdrlbcefghsnujxitw  RpsJ   [J]   COG0051 Ribosomal protein S10
-  45 aompkzyqvdrlbcefghsnujxitw  RpsK   [J]   COG0100 Ribosomal protein S11
-  46 aompkzyqvdrlbcefghsnujxitw  RpsL   [J]   COG0048 Ribosomal protein S12
-  45 aompkzyqvdrlbcefghsnujxitw  RpsM   [J]   COG0099 Ribosomal protein S13
-  49 aompkzyqvdrlbcefghsnujxitw  RpsN   [J]   COG0199 Ribosomal protein S14
-  45 aompkzyqvdrlbcefghsnujxitw  RpsO   [J]   COG0184 Ribosomal protein S15P/S13E
-  34 ------yqvdrlbcefghsnujxitw  RpsP   [J]   COG0228 Ribosomal protein S16
-  45 aompkzyqvdrlbcefghsnujxitw  RpsQ   [J]   COG0186 Ribosomal protein S17
-  11 aompkzy-------------------  RPS17A [J]   COG1383 Ribosomal protein S17E
-  35 ------yqvdrlbcefghsnujxitw  RpsR   [J]   COG0238 Ribosomal protein S18
-  44 aompkzyqvdrlbcefghsnujxitw  RpsS   [J]   COG0185 Ribosomal protein S19
-  11 aompkzy-------------------  RPS19A [J]   COG2238 Ribosomal protein S19E (S16A)
-  45 aompkzyqvdrlbcefghsnujxitw  RpsB   [J]   COG0052 Ribosomal protein S2
-  33 -------qvdrlbcefghsnujxitw  RpsT   [J]   COG0268 Ribosomal protein S20
-  29 -------q---lbcefghsnujxitw  RpsU   [J]   COG0828 Ribosomal protein S21
-  11 aompkzy-------------------  RPS24A [J]   COG2004 Ribosomal protein S24E
-  10 aompkzy-------------------  RPS31  [J]   COG1998 Ribosomal protein S27AE
-  11 aompkzy-------------------  RPS27A [J]   COG2051 Ribosomal protein S27E
-  11 aompkzy-------------------  RPS28A [J]   COG2053 Ribosomal protein S28E/S33
-  43 aompkzyqvdrlbcefghsnujxitw  RpsC   [J]   COG0092 Ribosomal protein S3
-  11 aompkzy-------------------  RPS1A  [J]   COG1890 Ribosomal protein S3AE
-  46 aompkzyqvdrlbcefghsnujxitw  RpsD   [J]   COG0522 Ribosomal protein S4 and related proteins
-  11 aompkzy-------------------  RPS4A  [J]   COG1471 Ribosomal protein S4E
-  44 aompkzyqvdrlbcefghsnujxitw  RpsE   [J]   COG0098 Ribosomal protein S5
-  34 ------yqvdrlbcefghsnujxitw  RpsF   [J]   COG0360 Ribosomal protein S6
-  11 aompkzy-------------------  RPS6A  [J]   COG2125 Ribosomal protein S6E (S10)
-  45 aompkzyqvdrlbcefghsnujxitw  RpsG   [J]   COG0049 Ribosomal protein S7
-  45 aompkzyqvdrlbcefghsnujxitw  RpsH   [J]   COG0096 Ribosomal protein S8
-  12 aompkzy-------------------  RPS8A  [J]   COG2007 Ribosomal protein S8E
-  45 aompkzyqvdrlbcefghsnujxitw  RpsI   [J]   COG0103 Ribosomal protein S9
-   4 --------------efg---------  Rmf    [J]   COG3130 Ribosome modulation factor
-  34 ------yqvdrlbcefghsnujxitw  Frr    [J]   COG0233 Ribosome recycling factor
-  19 --------v--lb-efgh-nuj----   -     [J]   COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)
-  25 -------qvdrlbcefghs--jxit-   -     [J]   COG1544 Ribosome-associated protein Y (PSrp-1)
-  33 -------qvdrlbcefghsnujxitw  RbfA   [J]   COG0858 Ribosome-binding factor A
-  28 -------qvdrlbcefghsnujx-t-  RimM   [J]   COG0806 RimM protein, required for 16S rRNA processing
-  26 -------qvd-lbcefghsnujx-t-  QueA   [J]   COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase)
-  42 ----k-yqv-rlbcefghsnuj-i--  TrmA   [J]   COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase
-   7 -------q------ef-h--u-----  SelB   [J]   COG3276 Selenocysteine-specific translation elongation factor
-  44 aompkzyqvdrlbcefghsnujxitw  SerS   [J]   COG0172 Seryl-tRNA synthetase
-  16 --------------efghsn-jx---  SmpA   [J]   COG2913 Small protein A (tmRNA-binding)
-  48 aompkzyqvdrlbcefghsnujxitw  ThrS   [J]   COG0441 Threonyl-tRNA synthetase
-  74 aompkzyqvdrlbcefghsnujxitw  FusA   [J]   COG0480 Translation elongation and release factors (GTPases)
-  10 aompkzy-------------------  EFB1   [J]   COG2092 Translation elongation factor EF-1beta
-  51 aompkzyqvdrlbcefghsnujxitw  Efp    [J]   COG0231 Translation elongation factor P/translation initiation factor eIF-5A
-  33 -------qvdrlbcefghsnujxitw  Tsf    [J]   COG0264 Translation elongation factor Ts
-  19 aompkzy------cefgh--------  SUI1   [J]   COG0023 Translation initiation factor (SUI1)
-  47 aompkzyqvdrlbcefghsnujxitw  InfB   [J]   COG0532 Translation initiation factor 2 (GTPase)
-  45 aompkzyqvdrlbcefghsnujxitw  InfA   [J]   COG0361 Translation initiation factor IF-1
-  33 -------qvdrlbcefghsnujxitw  InfC   [J]   COG0290 Translation initiation factor IF3
-  11 aompkzy-------------------  GCD7   [J]   COG1601 Translation initiation factor eIF-2, beta subunit/eIF-5 N-terminal domain
-  16 a-mpkzyqv---bc-f--s--j----  GCN3   [J]   COG0182 Translation initiation factor eIF-2B alpha subunit
-  15 aompkzy-v-----------------  GCD2   [J]   COG1184 Translation initiation factor eIF-2B delta subunit
-  10 aompkzy-------------------  SUI2   [J]   COG1093 Translation initiation factor eIF2alpha
-  11 -------q------e-ghs--j--t-   -     [J]   COG2269 Truncated, possibly inactive Class II lysyl-tRNA synthetase
-  47 aompkzyqvdrlbcefghsnujxitw  TrpS   [J]   COG0180 Tryptophanyl-tRNA synthetase
-  48 aompkzyqvdrlbcefghsnujxitw  TyrS   [J]   COG0162 Tyrosyl-tRNA synthetase
-   5 -----------lb------------w   -     [J]   COG3557 Uncharacterized domain/protein associated with RNAses G and E
-  43 aompkzyqvdrlbcefghsnujxitw  ValS   [J]   COG0525 Valyl-tRNA synthetase
-  22 aomp-z---d---cefghsn-j----  LasT   [J]   COG0565 rRNA methylase
-  65 a-----yqvdrlbcefghsnujxitw  SpoU   [J]   COG0566 rRNA methylases
-  51 aom-kzy-vdrlbcefghsnuj-i--  Sun    [J]   COG0144 tRNA and rRNA cytosine-C5-methylases
-  31 ------yqvdrlbcefghsnujxit-  MiaA   [J]   COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase
-   9 aompkz--------------------  CCA1   [J]   COG1746 tRNA nucleotidyltransferase (CCA-adding enzyme)
-  48 ------yqvdrlbcefghsnujxit-  PcnB   [J]   COG0617 tRNA nucleotidyltransferase/poly(A) polymerase
-  12 aompkzy-------------------  SEN2   [J]   COG1676 tRNA splicing endonuclease
-  33 -------qvdrlbcefghsnujxitw  TrmD   [J]   COG0336 tRNA-(guanine-N1)-methyltransferase
-   8 ----------r---efg---------  MalT   [K]   COG2909 ATP-dependent transcriptional regulator
- 246 --------v-rlbcefghsnuj----  AraC   [K]   COG2207 AraC-type DNA-binding domain-containing proteins
-  10 a-mpkz--------------------  Ssh10b [K]   COG1581 Archaeal DNA-binding protein
-   4 ------------b-e----n------   -     [K]   COG2732 Barstar, RNAse (barnase) inhibitor
-  14 ao--k----d-lb-efghs-------  BirA   [KH]  COG1654 Biotin operon repressor
-  67 -o-----qvdrlb-efghsn-jx---  CspC   [K]   COG1278 Cold shock proteins
-  58 ---------drlbcefg----j----  CsgD   [K]   COG2771 DNA-binding HTH domains
-  14 ----------r-b-e-g----j----  CadC   [K]   COG3710 DNA-binding winged-HTH domains
-  44 aompkzyqvdrlbcefghsnujxitw  RpoA   [K]   COG0202 DNA-directed RNA polymerase alpha subunit/40 kD subunit
-  49 aompkzyqvdrlbcefghsnujxitw  RpoB   [K]   COG0085 DNA-directed RNA polymerase beta subunit/140 kD subunit (split gene in Mjan, Mthe, Aful)
-  60 aompkzyqvdrlbcefghsnujxitw  RpoC   [K]   COG0086 DNA-directed RNA polymerase beta' subunit/160 kD subunit (split gene in archaea and Syn)
-   7 -----------lb------------w  RpoE   [K]   COG3343 DNA-directed RNA polymerase delta subunit
-  66 -------qvdrlbcefghsnujxitw  RpoD   [K]   COG0568 DNA-directed RNA polymerase sigma subunits (sigma70/sigma32)
-  23 -------qv-r-bcefg---u--it-  FliA   [K]   COG1191 DNA-directed RNA polymerase specialized sigma subunit
- 109 --------vdrlbcefghsn-j--t-  RpoE   [K]   COG1595 DNA-directed RNA polymerase specialized sigma subunits, sigma24 homologs
-  20 -------q----b-efg-snuj-it-  RpoN   [K]   COG1508 DNA-directed RNA polymerase specialized sigma subunits, sigma54 homologs
-  11 aompkzy-------------------  RPB7   [K]   COG1095 DNA-directed RNA polymerase subunit E'
-   9 aompkz--------------------   -     [K]   COG2093 DNA-directed RNA polymerase subunit E''
-  37 aompkzyqvdrlbcefghsnujx-t-  RpoZ   [K]   COG1758 DNA-directed RNA polymerase subunit K/omega
-  15 aompkzy-------------------  RPB9   [K]   COG1594 DNA-directed RNA polymerase subunit M/Transcription elongation factor TFIIS
-  10 aompkzy-------------------  RPC10  [K]   COG1996 DNA-directed RNA polymerase subunit RPC10 (contains C4-type Zn-finger)
-  10 aompkzy-------------------  RPB5   [K]   COG2012 DNA-directed RNA polymerase, subunit H, RpoH/RPB5
-  11 aompkzy-------------------  RPB11  [K]   COG1761 DNA-directed RNA polymerase, subunit L
-  10 aompkzy-------------------  RPB10  [K]   COG1644 DNA-directed RNA polymerase, subunit N (RpoN/RPB10)
-  10 aompk-y-v-----------------  ELP3   [K]   COG1243 ELP3 component of the RNA polymerase II complex, consists of an N-terminal BioB/LipA-like domain and a C-terminal histone acetyltransferase domain (only BioB/LipA-like domain in Thermotoga)
-  45 -o----yqvd-lbcefghsnuj-itw  VacB   [K]   COG0557 Exoribonucleases
-  10 --------------efghsn------  Fis    [KL]  COG2901 Factor for inversion stimulation Fis, transcriptional activator
-   7 --------v---b-e-----------  GlpP   [K]   COG1954 Glycerol-3-phosphate responsive antiterminator (mRNA-binding)
- 309 aompkzyqvdrlbcefghsnuj-i-w  WecD   [KR]  COG0454 Histone acetyltransferase HPA2 and related acetyltransferases
-  35 aompkz--vdrlb-e---s--j-it-  TroR   [K]   COG1321 Mn-dependent transcriptional regulator
-   8 -------qv---b-efg---------  FlgM   [KN]  COG2747 Negative regulator of flagellin synthesis (anti-sigma-28 factor)
-   5 -----------l--e--h-n------   -     [K]   COG3561 Phage anti-repressor protein
-   3 ----------r-b-e-----------  PaaX   [K]   COG3327 Phenylacetic acid-responsive transcriptional repressor
-  21 aompkzy-vd-lbc------u---t-   -     [K]   COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP
-  13 ---------drlb-------uj---w   -     [K]   COG2740 Predicted nucleic-acid-binding  protein implicated in transcription termination
-  11 aompkzy-------------------   -     [K]   COG1813 Predicted transcription factor, homolog of eukaryotic MBF1
-  42 -------qvdrlbcefghsnujx---   -     [K]   COG1959 Predicted transcriptional regulator
-  12 ---p-----dr-bc--g---------   -     [K]   COG2345 Predicted transcriptional regulator
-  20 ---------dr-b-efg-snuj----   -     [K]   COG2378 Predicted transcriptional regulator
-   6 a-m-kz--------------------   -     [K]   COG2462 Predicted transcriptional regulator
-  24 -----------l--ef-hsn-j----   -     [K]   COG2932 Predicted transcriptional regulator
-   9 --------------e-g-sn------   -     [K]   COG2944 Predicted transcriptional regulator
-  11 --------------e-g-s-------  AlpA   [K]   COG3311 Predicted transcriptional regulator
-   9 aom-----------------------   -     [K]   COG3355 Predicted transcriptional regulator
-   5 --------------e--h-n------  Nlp    [K]   COG3423 Predicted transcriptional regulator
-  11 a-mp-z--------------------   -     [K]   COG3432 Predicted transcriptional regulator
-   6 -----------------hs--j----   -     [K]   COG3636 Predicted transcriptional regulator
-   7 ------------b--f-----j----   -     [K]   COG3655 Predicted transcriptional regulator
-  10 ----k-----rl-c-------j----   -     [K]   COG3682 Predicted transcriptional regulator
-   5 ----k----d----------u----w   -     [K]   COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen
-   3 ao--k---------------------   -     [K]   COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon
-  29 a--pk---vdrlbc-f--sn-j--tw   -     [K]   COG1386 Predicted transcriptional regulator containing the HTH domain
-   5 aom--z--------------------   -     [K]   COG2524 Predicted transcriptional regulator with C-terminal CBS domains
-   6 ao-pk---------------------   -     [K]   COG3620 Predicted transcriptional regulator with C-terminal CBS domains
-  22 --------vdrlbcefghsn-j-i--   -     [K]   COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains
- 152 aompkz-qvdrlbcefghsnuj----  ArsR   [K]   COG0640 Predicted transcriptional regulators
-  89 a------q-drlbcefghsnuj----  SoxR   [K]   COG0789 Predicted transcriptional regulators
-   8 a-m-kz-qv-----------------   -     [K]   COG1318 Predicted transcriptional regulators
-  23 aompkz---d--b-------------   -     [K]   COG1378 Predicted transcriptional regulators
-   9 aompkz--------------------   -     [K]   COG1395 Predicted transcriptional regulators
- 168 --m----qvdrlb-efghsn-jx-t-  HipB   [K]   COG1396 Predicted transcriptional regulators
-  58 aom-kz-q-drlb-efg-snujxit-  Spo0J  [K]   COG1475 Predicted transcriptional regulators
-  19 aom-k----d-lb--f-----j----   -     [K]   COG1476 Predicted transcriptional regulators
-   6 aomp----------------------   -     [K]   COG1497 Predicted transcriptional regulators
-   7 --m-k-------b-------------   -     [K]   COG1510 Predicted transcriptional regulators
-  65 aompkz--vdrlb-e-g----j----   -     [K]   COG1695 Predicted transcriptional regulators
-   9 aompkz---------f----------   -     [K]   COG1709 Predicted transcriptional regulators
-  12 ---p----v-rlbc------------   -     [K]   COG1725 Predicted transcriptional regulators
-  62 aomp-z---drlbcefghs-uj----   -     [K]   COG1733 Predicted transcriptional regulators
-   9 aompk---------------------   -     [K]   COG1777 Predicted transcriptional regulators
-  22 aompkz----r-b-e---s--j----   -     [K]   COG3609 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain
-  19 aom-kz---d--b-e-----uj----  NikR   [K]   COG0864 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain
-  14 -----------l--ef-hs-------   -     [K]   COG3617 Prophage antirepressor
-  11 ----k---v--lb-e-g---------  PspC   [KT]  COG1983 Putative stress-responsive transcriptional regulator
-  19 ---pkzy----lb----h--u-----  TenA   [K]   COG0819 Putative transcription activator
-  17 ---------dr---efghsn-jxi--   -     [K]   COG1678 Putative transcriptional regulator
-  18 -------qvdr-bc-f--snuj--t-   -     [K]   COG1521 Putative transcriptional regulators, homologs of Bvg accessory factor
-  12 aom-kzyq------ef----------  RCL1   [K]   COG0430 RNA phosphate cyclase
-  48 ------y------c--g---u---t-   -     [K]   COG0724 RNA-binding proteins (RRM domain)
-   4 --------------efg---------  Rsd    [K]   COG3160 Regulator of sigma D
-  22 ao--kz----r-b--------j----  AbrB   [K]   COG2002 Regulators of stationary/sporulation gene expression
-  10 --------v----c-fg-s-------   -     [KT]  COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain
-  20 -----------lb-efg-s--j----  LytT   [KT]  COG3279 Response regulator of the LytR/AlgR family
-  24 --------vdrlbcefghs--j----  LexA   [KT]  COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases)
-  28 aompkzy-------------------  LSM1   [K]   COG1958 Small nuclear ribonucleoprotein (snRNP) homolog
-   7 ------------b-efgh--------   -     [KT]  COG3835 Sugar diacid utilization regulator
-  56 ao-pkzy-vdrlbcefghs----i-w  HepA   [KL]  COG0553 Superfamily II DNA/RNA helicases, SNF2 family
-  47 aompkzyqvdrlbcefghsnujxitw  NusG   [K]   COG0250 Transcription antiterminator
-  47 aompkz-qvdrlbcefghsnujxitw  NusA   [K]   COG0195 Transcription elongation factor
-  50 --------vdrlb-efghsnujxitw  GreA   [K]   COG0782 Transcription elongation factor
-  10 aompkzy-------------------  EGD2   [K]   COG1308 Transcription factor homologous to NACalpha-BTF3
-  26 aompkzy-------------------  SUA7   [K]   COG1405 Transcription initiation factor IIB
-   8 aom-kzy-------------------  TFA1   [K]   COG1675 Transcription initiation factor IIE, large subunit
-  20 aompkzy-------------------  SPT15  [K]   COG2101 Transcription initiation factor TFIID (TATA-binding protein)
-  33 -------qvdrlbcefghsnujxitw  NusB   [K]   COG0781 Transcription termination factor
-  27 -------qvdr-b-efghsnujxit-  Rho    [K]   COG1158 Transcription termination factor
-  24 -----------lb-e-----------  BglG   [K]   COG3711 Transcriptional antiterminator
- 443 a-m----q-drlbcefghsnuj----  LysR   [K]   COG0583 Transcriptional regulator
- 309 aom-k--qvdrlbcefghsnuj---w  AcrR   [K]   COG1309 Transcriptional regulator
-  26 --------vdrlbc----------t-  LytR   [K]   COG1316 Transcriptional regulator
-  47 -o-----qvdr-b-efgh--uj----  IclR   [K]   COG1414 Transcriptional regulator
-   9 ------y--d--b--f--s--j----  PaiB   [K]   COG2808 Transcriptional regulator
-   6 --------------e-gh--------  MtlR   [K]   COG3722 Transcriptional regulator
-  14 -------q------efg----j--t-  FhlA   [KT]  COG3604 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains
-  12 -------q----b-ef----------  RocR   [KT]  COG3829 Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains
-   9 aompkz--------------------   -     [K]   COG1339 Transcriptional regulator of a riboflavin/FAD biosynthetic operon
-   7 --------------efgh--------  TyrR   [K]   COG3283 Transcriptional regulator of aromatic amino acids metabolism
-  19 --------v-rlbc----s-uj-i-w  HrcA   [K]   COG1420 Transcriptional regulator of heat shock gene
-  19 ---------d-lb-e-gh---j----  DeoR   [K]   COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain
- 153 aompkz---dr-b-efgh-n-j----  Lrp    [K]   COG1522 Transcriptional regulators
- 134 --------vdrlb-efghs--j----  PurR   [K]   COG1609 Transcriptional regulators
-  44 --------v--lb-efgh-n-j----  RpiR   [K]   COG1737 Transcriptional regulators
-  61 ---p----vdrlb-efg--n-j----  GntR   [K]   COG1802 Transcriptional regulators
- 149 aompkz--vdrlb-efg-sn-j----  MarR   [K]   COG1846 Transcriptional regulators
-  74 ao-p-z-qvdrlbce-gh---j--t-  NagC   [K]   COG1940 Transcriptional regulators
-  54 ---------dr-b-efgh-n-j----  FadR   [K]   COG2186 Transcriptional regulators
-  55 ---------drlb-efg----j---w  PhnF   [K]   COG2188 Transcriptional regulators
-  57 ---pkzy-vdrlb-efgh---j----  ARO8   [KE]  COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs
-  72 -------qvd-lb-efgh-n-j----  GlpR   [KG]  COG1349 Transcriptional regulators of sugar metabolism
-  12 -------q-dr-b--------jx-t-   -     [K]   COG1329 Transcriptional regulators, similar to M. xanthus CarD
-   7 --------------e-ghs----i--  TrpR   [K]   COG2973 Trp operon repressor
-  36 ------yqvdrlbcefghsnujxitw  Rnc    [K]   COG0571 dsRNA-specific ribonuclease
-  23 aom-kzy--dr-bcefg-s--j----  AlkA   [L]   COG0122 3-Methyladenine DNA glycosylase
-  17 ----------rlb-efgh-n-j----  Tag    [L]   COG2818 3-Methyladenine DNA glycosylase
-  10 -----z---dr-b--f-----jxit-  Mpg    [L]   COG2094 3-methyladenine DNA glycosylase
-  56 aompkzyqvdrlbcefghsnujxitw  Exo    [L]   COG0258 5'-3' exonuclease (including N-terminal domain of PolI)
-  28 -om--z---drlb-efghsnuj-it-  MutY   [L]   COG1194 A/G-specific DNA glycosylase
-  38 aompkzyq--r-b--fgh-nuj----  CDC9   [L]   COG1793 ATP-dependent DNA ligase
-   7 a-m-kz-q------------------   -     [L]   COG1423 ATP-dependent DNA ligase, homolog of eukaryotic ligase III
-  25 ----------rlb-efghsnujxit-  RecB   [L]   COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains)
-  28 --m---y--drlb-efghsnuj-it-  RecD   [L]   COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member
-  21 aompkz-qvd-lbcefg-------t-  SbcC   [L]   COG0419 ATPase involved in DNA repair
-  65 aompkzyqvdrlbcefghsnu-xitw  HolB   [L]   COG0470 ATPase involved in DNA replication
-  47 -------qvdrlbcefghsnujxitw  DnaA   [L]   COG0593 ATPase involved in DNA replication initiation
-  25 -------q-drlbcefghsnujx-t-  RecN   [L]   COG0497 ATPases involved in DNA repair
-  19 a--p-------------hsnuj---w   -     [L]   COG2189 Adenine specific DNA methylase Mod
-  21 --m-k-----rlb----h--uj---w   -     [L]   COG0827 Adenine-specific DNA methylase
-   4 ------------b-------u-----   -     [L]   COG3392 Adenine-specific DNA methylase
-   9 ----------r---efg-s--j----  AlkB   [L]   COG3145 Alkylated DNA repair protein
-   7 aom-k---------------------   -     [L]   COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain
-  72 ---p---qvdrlbcefghsnujxitw  HimA   [L]   COG0776 Bacterial nucleoid DNA-binding protein
-  31 aompkzy-------------------  CDC6   [LO]  COG1474 Cdc6-related protein, AAA superfamily ATPase
-   4 --------------e----n-j----  Vsr    [L]   COG3727 DNA G:T-mismatch repair endonuclease
-  62 ao-p--yqvdrlbcefghsnujxitw  GyrA   [L]   COG0188 DNA gyrase (topoisomerase II) A subunit
-  61 ao-p--yqvdrlbcefghsnujxitw  GyrB   [L]   COG0187 DNA gyrase (topoisomerase II) B subunit
-   9 ------------b-e------j----   -     [L]   COG3449 DNA gyrase inhibitor
-   6 a---kzy-------------------  TIP49  [L]   COG1224 DNA helicase TIP49, TBP-interacting protein
-  31 -o----yqvd-lbcefghsn-jxit-  MutL   [L]   COG0323 DNA mismatch repair enzyme (predicted ATPase)
-   5 --------------e-gh--------  MutH   [L]   COG3066 DNA mismatch repair protein
-  41 -ompk---vd-lb-e-ghsnuj----   -     [L]   COG0863 DNA modification methylase
-  29 ao-pkzy--drl--e-g-------t-  SSL2   [L]   COG1061 DNA or RNA helicases of superfamily II
-  30 ------yqvdrlbcefghsnujxit-  PolA   [L]   COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains
-   9 aompk-y-------------------  HYS2   [L]   COG1311 DNA polymerase II small subunit (predicted phosphatase)
-  39 -------qvdrlbcefghsnujxitw  DnaE   [L]   COG0587 DNA polymerase III alpha subunit
-   8 --------v--lb------------w  PolC   [L]   COG2176 DNA polymerase III alpha subunit, the Gram-positive type
-  12 --------------efghsn-jx---  HolC   [L]   COG2927 DNA polymerase III chi subunit
-  32 -------qvdrlbcefghsnujxitw  HolA   [L]   COG1466 DNA polymerase III delta subunit
-  58 a--p--yqvdrlbcefghsnujxit-  DnaQ   [L]   COG0847 DNA polymerase III epsilon subunit and related 3'-5' exonucleases
-  37 -------qvdrlbcefghsnujxitw  DnaX   [L]   COG2812 DNA polymerase III, gamma/tau subunits
-   4 --------------e-gh--------  HolD   [L]   COG3050 DNA polymerase III, psi subunit
-   8 --mp--yq-d--b-------------  POL4   [L]   COG1796 DNA polymerase IV (family X)
-  28 aompkzy-------efg---------  PolB   [L]   COG0417 DNA polymerase elongation subunit (family B)
-  46 aompkzyqvdrlbcefghsnujxitw  DnaN   [L]   COG0592 DNA polymerase sliding clamp subunit (PCNA homolog)
-  46 aompkz-qvdrlbcefghsnujxitw  DnaG   [L]   COG0358 DNA primase (bacterial type)
-   9 --------------efghsn------  RdgC   [L]   COG2974 DNA recombination-dependent growth factor C
-  26 aompkzyqvdrlbcefg-------t-  SbcD   [L]   COG0420 DNA repair exonuclease
-  20 a-mpkz--v-r-bc-f-----j----  SplB   [L]   COG1533 DNA repair photolyase
-  25 -------qv--lbcefghsn-j----  RadC   [L]   COG2003 DNA repair proteins
-  30 -------q--rlb-e------j---w  DnaC   [L]   COG1484 DNA replication protein
-   8 aom-kzy-------------------   -     [L]   COG1697 DNA topoisomerase VI, subunit A
-   7 aom-kz--------------------   -     [L]   COG1389 DNA topoisomerase VI, subunit B
-  24 --------vdrlbcefghsnu-----  ComEA  [L]   COG1555 DNA uptake protein and related DNA-binding proteins
-   7 -----------l--e-ghs-------  RelB   [L]   COG3077 DNA-damage-inducible protein J
-  14 ao-pkz-qvd--b-e---s-------  Nfi    [L]   COG1515 Deoxyinosine 3'endonuclease (endonuclease V)
-  17 -om---y----l-cefg--n-j----  PhrB   [L]   COG0415 Deoxyribodipyrimidine photolyase
-   9 aompk-y-------------------  MPH1   [L]   COG1111 ERCC4-like helicases
-  10 aom-kzy-------------------  MUS81  [L]   COG1948 ERCC4-type nucleases
-   7 ---------d--b-efg---------  EndA   [L]   COG2356 Endonuclease I
-   9 --mp---qv-----------u-----   -     [L]   COG2231 Endonuclease III related proteins
-  26 -ompkzyqv-r-b-e-g------i-w  Nfo    [L]   COG0648 Endonuclease IV
-  10 aompkzy-------------------  PRI2   [L]   COG2219 Eukaryotic-type DNA primase, large subunit
-  11 aompkzy-------------------  PRI1   [L]   COG1467 Eukaryotic-type DNA primase, small subunit
-  36 -om----qvdrlbcefghsnujxitw  UvrA   [L]   COG0178 Excinuclease ATPase subunit
-   8 --------------efghs-------  SbcB   [L]   COG2925 Exonuclease I
-  37 a-mp--y--drlbcefghsnujx-t-  XthA   [L]   COG0708 Exonuclease III
-  14 ----------r---efghsn---it-  RecC   [L]   COG1330 Exonuclease V gamma subunit
-  23 --------vdrlb-efghsnujx---  XseB   [L]   COG1722 Exonuclease VII small subunit
-  26 --------vdrlb-efghsnujxi--  XseA   [L]   COG1570 Exonuclease VII, large subunit
-  28 ---------drlbcefghsn-j---w  Nei    [L]   COG0266 Formamidopyrimidine-DNA glycosylase
-   8 ---------d----e--h-nuj----  Mug    [L]   COG3663 G:T/U mismatch-specific DNA glycosylase
-  11 --m-k--q-d--bce-----u-----  McrB   [L]   COG1401 GTPase subunit of restriction endonuclease
-  35 -om----qvdrlbcefghsnujxitw  UvrB   [L]   COG0556 Helicase subunit of the DNA excision repair complex
-  21 aom-k-y-------------------  HHT1   [L]   COG2036 Histones H3 and H4
-   7 aom-kz--------------------   -     [L]   COG1591 Holliday junction resolvase - archaeal type
-  31 --------vdrlbcefghsnujxitw  RuvA   [L]   COG0632 Holliday junction resolvasome DNA-binding subunit
-  23 --------vdr--cefghsnujxit-  RuvC   [L]   COG0817 Holliday junction resolvasome endonuclease subunit
-  32 --------vdrlbcefghsnujxitw  RuvB   [L]   COG2255 Holliday junction resolvasome helicase subunit
-  28 ------y--d----efghsn-j--t-  HrpA   [L]   COG1643 HrpA-like helicases
-  45 -o-p----------e-g--n------   -     [L]   COG3039 IS5 transposase
-  17 -------q-----ce--h--------  InsB   [L]   COG1662 Insertion element IS1 protein InsB, putative transposase
- 219 aompkz-qvdrlbcefghsnujxitw  XerC   [L]   COG0582 Integrase
-  64 --mpkzyq-dr-bc------------   -     [L]   COG1372 Inteins
-   5 --m-kz--------------------   -     [L]   COG3780 Intron_maturase, DNA endonuclease (intein-related)
-  46 aompkzyqv-rlb-efghsnuj-it-  Ada    [L]   COG0350 Methylated DNA-protein cysteine methyltransferase
-  56 --m-kzyqvdrlbcefghsnujxitw  TatD   [L]   COG0084 Mg-dependent DNase
-  22 -om-k-yq----b--f-h-nuj---w   -     [L]   COG1525 Micrococcal nuclease (thermonuclease) homologs
-  17 -om-k--qvd-lbc------u---t-   -     [L]   COG1193 MutS-like ATPases involved in mismatch repair, family 1
-  35 -o-p--yqvd-lbcefghsn-jxit-  MutS   [L]   COG0249 MutS-like ATPases involved in mismatch repair, family 2
-  29 --------vdrlbcefghsnujxit-   -     [L]   COG0742 N6-adenine-specific methylase
-  10 aompk---------------------   -     [L]   COG1933 NA polymerase II large subunit
-  35 -------qvdrlbcefghsnujxitw  Lig    [L]   COG0272 NAD-dependent DNA ligase (contains BRCT domain type II)
-  11 ------y--dr---efgh---j----  NPY1   [L]   COG2816 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding
- 198 aomp-zyqvdrlbcefghsnujxit-  MutT   [LR]  COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes
-   5 --------------e-gh--------  SeqA   [L]   COG3057 Negative regulator of replication initiationR
-  40 -om----qvdrlbcefghsnujxitw  UvrC   [L]   COG0322 Nuclease subunit of the excinuclease complex
-  35 -o----y---rlbcefgh-n-j---w  DinP   [L]   COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair
-   8 -----------lb-e------j----  XtmA   [L]   COG3728 Phage terminase, small subunit
-   6 -------------------nu-----   -     [L]   COG3298 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB
-  11 --m----------cefgh--uj----   -     [L]   COG3593 Predicted ATP-dependent endonuclease of the OLD family
-  23 aompkzy-------------------  MCM2   [L]   COG1241 Predicted ATPase involved in replication control, Cdc46/Mcm family
-   5 a---kz--v-----------------   -     [L]   COG1743 Predicted DNA methylase containing a Zn-ribbon module
-  12 aompkzy-------------------   -     [L]   COG1041 Predicted DNA modification methylase
-   5 ------y--d-----f-----j----   -     [L]   COG3569 Predicted DNA topoisomerase IB
-  46 aompkzyqvdrlbcefghsnujxit-  Nth    [L]   COG0177 Predicted EndoIII-related endonuclease
-   5 a-m-kz--------------------   -     [L]   COG2254 Predicted HD superfamily hydrolase, possibly a nuclease
-  21 a-m-kz---d-lbcefghsn------   -     [L]   COG0116 Predicted N6-adenine-specific DNA methylases
-  25 -------qvdrlbcefghsnuj--t-  Smf    [LN]  COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake
-  20 -o---------lb-efg--n-j----   -     [L]   COG2827 Predicted endonuclease containing a URI domain
-  21 -------qvdr--cefghsnuj--t-   -     [L]   COG0792 Predicted endonuclease distantly related to archaeal Holliday junction resolvase
-   6 --------vd--bc------u-----   -     [L]   COG1787 Predicted endonuclease distantly related to archaeal Holliday junction resolvase and Mrr-like restriction enzymes
-  31 -------qvdrlbcefghsnujxi-w   -     [L]   COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)
-   9 ----------r-b--f-----j----   -     [L]   COG3285 Predicted eukaryotic-type DNA primase
-   4 -om---------b-------------   -     [L]   COG3359 Predicted exonuclease
-   7 ---------drl--efg---------   -     [L]   COG3695 Predicted methylated DNA-protein cysteine methyltransferase
-   9 -om-kz----r---------------   -     [L]   COG1637 Predicted nuclease of the RecB family
-   4 ---------d-----fg----j----   -     [L]   COG3183 Predicted restriction endonuclease
-   5 ---p-----d----e----n------   -     [L]   COG3440 Predicted restriction endonuclease
-  11 --mpk-----r---------------   -     [L]   COG2452 Predicted site-specific integrase-resolvase
-  23 a--p-----dr---efgh-n-j----   -     [L]   COG1425 Predicted transposase
-  56 -o-p----vd--b-efgh-nuj----   -     [L]   COG1943 Predicted transposase
-  64 ---------dr--c-------j----   -     [L]   COG3293 Predicted transposase
-  33 ---p------rlb-e------j---w   -     [L]   COG3328 Predicted transposase
-  60 a--p-----d--bce----n-j----   -     [L]   COG3335 Predicted transposase
-  61 -o-p-----d--bce-----------   -     [L]   COG3385 Predicted transposase
-  88 -ompk--qvdr--ce---s-u---t-   -     [L]   COG0675 Predicted transposases
-   5 ----kz---d--------------t-   -     [L]   COG2810 Predicted type IV restriction endonuclease
-  30 -------qvdrlbcefghsnujxit-  PriA   [L]   COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase
-   7 --------------e-gh-n------  PriB   [L]   COG2965 Primosomal replication protein N
-  10 ------------b---g-sn------   -     [L]   COG2946 Putative phage replication protein RstA
- 135 ---p-----drlbcefgh-n-j---w  Tra5   [L]   COG2801 Putative transposase
-  15 aom----q----------s--j----   -     [L]   COG3316 Putative transposase
-  12 ao-p-----d--b-------------   -     [L]   COG3415 Putative transposase
-  34 -ompkzyq--rlb-efghsn-j----  DinG   [L]   COG1199 Rad3-related DNA helicases
-   4 -------q---l------s--j----  RepA   [L]   COG3598 RecA-family ATPase
-  57 aompkzyqvdrlbcefghsnujxitw  RecA   [L]   COG0468 RecA/RadA recombinase
-  14 a-m-kz-qv--lb-------------   -     [L]   COG1468 RecB family exonuclease
-  12 --m--z----r---------ujx-t-   -     [L]   COG2887 RecB family exonuclease
-  27 -------qvdrlbcefghsnujx-t-  RecG   [LK]  COG1200 RecG-like helicases
-  20 ---------drlbcefghs--jxit-  RecF   [L]   COG1195 Recombinational DNA repair ATPase (RecF pathway)
-   6 -----------lb-e-----------  RecT   [L]   COG3723 Recombinational DNA repair protein (RecE pathway)
-  28 -------q-drlbcefghsnujxitw  RecR   [L]   COG0353 Recombinational DNA repair protein (RecF pathway)
-  24 ---------drlbcefghsn-jxitw  RecO   [L]   COG1381 Recombinational DNA repair protein (RecF pathway)
-  18 aompkzy-------------------   -     [L]   COG1599 Replication factor A large subunit and related ssDNA-binding proteins
-   7 -----------lb------------w  DnaB   [L]   COG3611 Replication initiation/membrane attachment protein
-  38 -------qvdrlbcefghsnujxitw  DnaB   [L]   COG0305 Replicative DNA helicase
-  20 ---------drlbce---s--j----  McrA   [L]   COG1403 Restriction endonuclease
-   6 -om------dr---e-----------  Mrr    [L]   COG1715 Restriction endonuclease
-   6 -----------------h-nu-----   -     [L]   COG3587 Restriction endonuclease
-  50 aompk-----rl--efghs-uj---w  HsdS   [L]   COG0732 Restriction endonuclease S subunits
-  32 aom-k------l--efghsnuj---w  HsdR   [L]   COG0610 Restriction enzymes type I helicase subunits and related helicases
-  11 ----------r-bcefg---------   -     [L]   COG3344 Retron-type reverse transcriptase
-  11 a-m-kz-qv-----------------   -     [L]   COG1110 Reverse gyrase
-  26 -o----y--dr-bcefghsnujx-t-  RnhA   [L]   COG0328 Ribonuclease HI
-  38 aompkzyqvdrlbcefghsnujxit-  RnhB   [L]   COG0164 Ribonuclease HII
-   9 -------q---lb----------i-w   -     [L]   COG1039 Ribonuclease HII Family 2
-  49 ------yqvdrlbcefghsnujxitw  Ssb    [L]   COG0629 Single-stranded DNA-binding protein
-  48 aompk--qvd-lbcefghsnujxit-  RecJ   [L]   COG0608 Single-stranded DNA-specific exonuclease
-  37 --m-kz-----lbce-ghsnuj---w  Dcm    [L]   COG0270 Site-specific DNA methylase
-  18 --mpk-------bce-ghsnu---t-  Dam    [L]   COG0338 Site-specific DNA methylase
-  34 ---pk----drlb-efg-s--j----  PinR   [L]   COG1961 Site-specific recombinases, DNA invertase Pin homologs
-  17 a-mpk--q---lb-----------tw   -     [L]   COG1658 Small primase-like proteins (Toprim domain)
-  23 -o-------d-lbcefghs-ujx-t-  Dps    [L]   COG0783 Starvation-inducible DNA-binding protein
-  76 -omp--yqvdrlbcefghsnujxitw  UvrD   [L]   COG0210 Superfamily I DNA and RNA helicases
-  37 aompk-yqv-r--cef--s-u----w   -     [L]   COG1112 Superfamily I DNA and RNA helicases and helicase subunits
- 136 a-mp--yq-drlbcefghsnujx-tw  SrmB   [LKJ] COG0513 Superfamily II DNA and RNA helicases
-  22 -----zy--d-lbcefghsn-j--t-  RecQ   [L]   COG0514 Superfamily II DNA helicase
-   6 a-mp---qv-----------------   -     [L]   COG1059 Thermostable 8-oxoguanine DNA glycosylase
-  58 aompkzyqvdrlbcefghsnujxitw  TopA   [L]   COG0550 Topoisomerase IA
-  29 --------vdrlbcefghsnujxit-  Mfd    [LK]  COG1197 Transcription-repair coupling factor - superfamily II helicase
-   5 a-m-kz--------------------   -     [L]   COG2178 Translin (RNA-binding protein, recombination hotspot binding in eukaryotes)
- 118 ---p-----drlb-efgh---j----   -     [L]