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159 COGs U Intracellular trafficking, secretion, and vesicular transport
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14 28 38 66 ||||||||||||||||||||||||||||||||||||||  70 [U]  COG0201 Preprotein translocase subunit SecY
11 22 29 50 ||||-|-|------|||||||||||-||||||||||||  52 [U]  COG0341 Preprotein translocase subunit SecF
11 22 29 50 ||||-|-|------|||||||||||-||||||||||||  55 [U]  COG0342 Preprotein translocase subunit SecD
14 28 38 66 ||||||||||||||||||||||||||||||||||||||  66 [U]  COG0541 Signal recognition particle GTPase
14 28 38 66 ||||||||||||||||||||||||||||||||||||||  66 [U]  COG0552 Signal recognition particle GTPase
10 16 24 50 --------------||||||||||||||||||||||||  50 [MU] COG0597 Lipoprotein signal peptidase
12 22 30 51 |||||||-|-|---|||||||||-|--|||||||||||  89 [OU] COG0616 Periplasmic serine proteases (ClpP class)
 3 10 14 21 -||||||-|||------------------|----||||  52 [NU] COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis
10 16 24 50 --------------||||||||||||||||||||||||  61 [U]  COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase)
14 28 38 63 ||||||||||||||||||||||||||||||||||||||  93 [U]  COG0681 Signal peptidase I
10 16 24 50 --------------||||||||||||||||||||||||  50 [U]  COG0690 Preprotein translocase subunit SecE
11 18 26 52 -----------||-||||||||||||||||||||||||  62 [U]  COG0706 Preprotein translocase subunit YidC
10 15 23 46 --------------||||||||||||-|||||||||||  84 [OU] COG0740 Protease subunit of ATP-dependent Clp proteases
 9 15 23 42 --------------||||||-|||||||||||||||||  46 [LU] COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake
 8 15 24 43 --|||-|-|||---|-|||---|-|--|||||||||||  49 [U]  COG0805 Sec-independent protein secretion pathway component TatC
 7 13 20 33 |-|----|------|-|||||------|||||||||||  71 [U]  COG0811 Biopolymer transport proteins
 4  9 15 27 --|---|---------||--|------||||||-||||  38 [U]  COG0823 Periplasmic component of the Tol biopolymer transport system
 6 10 17 30 --------------|-|||||------|||||||||||  65 [U]  COG0848 Biopolymer transport protein
 6 10 13 27 --------------||----||-||--||-|-|-|||-  41 [NU] COG1157 Flagellar biosynthesis/type III secretory pathway ATPase
 6 10 13 27 --------------||----||-||--||-|-|-|||-  31 [NU] COG1298 Flagellar biosynthesis pathway, component FlhA
 9 15 23 47 --------------|-||||||||||||||||||||||  47 [U]  COG1314 Preprotein translocase subunit SecG
 5  9 11 21 ---------------|----||-||--||-|-|-|-|-  25 [NU] COG1317 Flagellar biosynthesis/type III secretory pathway protein
 6 10 13 27 --------------||----||-||--||-|-|-|||-  29 [NU] COG1338 Flagellar biosynthesis pathway, component FliP
 6 10 13 27 --------------||----||-||--||-|-|-|||-  32 [NU] COG1377 Flagellar biosynthesis pathway, component FlhB
 4 12 14 16 ||||||||||||||------------------------  16 [U]  COG1400 Signal recognition particle 19 kDa protein
 4  7 11 16 --------------|----||------||||-|-|||-  30 [NU] COG1450 Type II secretory pathway, component PulD
 8 12 19 31 --------------|||||||--|||-|||||||-||-  45 [NU] COG1459 Type II secretory pathway, component PulF
 5  8 10 19 --------------||-----|-||--||-|-|-|---  21 [NUO] COG1516 Flagellin-specific chaperone FliS
 4  8 15 27 --------------|-||-|-------||||||||||| 113 [MU] COG1538 Outer membrane protein
 9 15 22 33 ||-|-|-||||----|||||--||---|||||---||-  35 [OU] COG1585 Membrane protein implicated in regulation of membrane protease activity
 5  9 12 25 --------------||-----|-||--||-|-|-|||-  26 [NU] COG1677 Flagellar hook-basal body protein
 5  9 12 25 --------------||-----|-||--||-|-|-|||-  26 [NU] COG1684 Flagellar biosynthesis pathway, component FliR
 3  5  8 15 ---------------|--------||-||-|-|---|-  27 [NU] COG1705 Muramidase (flagellum-specific)
 5  9 12 25 --------------||-----|-||--||-|-|-|||-  27 [NU] COG1766 Flagellar biosynthesis/type III secretory pathway lipoprotein
 8 16 25 44 --|||-|||||---|-|||---|-|--|||||||||||  86 [U]  COG1826 Sec-independent protein secretion pathway components
 8 12 20 42 --------------||---|||||||-|||||||||||  43 [U]  COG1862 Preprotein translocase subunit YajC
 6 10 13 27 --------------||----||-||--||-|-|-|||-  45 [NU] COG1886 Flagellar motor switch/type III secretory pathway protein
 2  4 11 22 -|-------------------------|||||||-|||  22 [U]  COG1952 Preprotein translocase subunit SecB
 2  7  8 10 -||||||--||---------------------------  11 [NU] COG1955 Archaeal flagella assembly protein J
 5  9 12 25 --------------||-----|-||--||-|-|-|||-  26 [NU] COG1987 Flagellar biosynthesis pathway, component FliQ
 8 19 26 40 ||||-|||------|||||---||||-||||||||||-  50 [NOU] COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases
 5 14 19 24 |||||||||||-----------||---||--||--||-  44 [NU] COG2064 Flp pilus assembly protein TadC
 9 17 25 37 -||-|||||||---|-|-|-||--|--||||||||||-  64 [U]  COG2095 Multiple antibiotic transporter
 8 13 19 30 --------------|||||||--|||-||||||-|||-  88 [NU] COG2165 Type II secretory pathway, pseudopilin PulG
 4 12 12 14 ||||||||--||||------------------------  14 [U]  COG2443 Preprotein translocase subunit Sss1
 4  6  8 13 --------------||-------||--||-|-|-----  13 [KNU] COG2747 Negative regulator of flagellin synthesis (anti-sigma28 factor)
 8 13 20 32 --------------|||||||--|||-||||||||||-  48 [NU] COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB
 7  9 13 18 --------------||||||---|---||||-||----  23 [NU] COG2805 Tfp pilus assembly protein, pilus retraction ATPase PilT
 3  7 11 15 ----------------||-|-------|||-|||||--  42 [U]  COG2831 Hemolysin activation/secretion protein
 2  7  8 10 -||||||--||---------------------------  11 [NU] COG2874 Predicted ATPases involved in biogenesis of archaeal flagella
 4  6  8 14 ---------------|-----|-||--||-|-|-----  14 [NUO] COG2882 Flagellar biosynthesis chaperone
 1  4  6 11 -----------------------------|--|-||||  23 [U]  COG2948 Type IV secretory pathway, VirB10 components
 2  2  3  3 --------------|-------------|-|-------   4 [U]  COG3031 Type II secretory pathway, component PulC
 1  2  7  9 ---------------------------|||||||----   9 [NU] COG3063 Tfp pilus assembly protein PilF
 1  1  4  9 ---------------------------||-||------  10 [U]  COG3114 Heme exporter protein D
 3  5  8 14 -----------------||--------|||--|---||  86 [NU] COG3121 P pilus assembly protein, chaperone PapD
 1  2  4  4 ---------------------------||-|-|-----   5 [U]  COG3149 Type II secretory pathway, component PulM
 1  3  7  8 ---------------------------||||-|--||-   9 [U]  COG3156 Type II secretory pathway, component PulK
 2  5  9 14 ----------------||---------||||-||--|-  15 [NU] COG3166 Tfp pilus assembly protein PilN
 1  2  5  6 ---------------------------|-||-||----   6 [NU] COG3167 Tfp pilus assembly protein PilO
 1  2  5  6 ---------------------------|-||-||----   6 [NU] COG3168 Tfp pilus assembly protein PilP
 1  2  5  6 ---------------------------|-||-||----   8 [NU] COG3170 Tfp pilus assembly protein FimV
 2  4  7 12 -----------------|---------|||--|---||  70 [NU] COG3188 P pilus assembly protein, porin PapC
 3  7 11 15 ----------------||-|-------|||-|||||--  79 [U]  COG3210 Large exoproteins involved in heme utilization or adhesion
 1  2  4  5 ---------------------------|-|--||----   5 [NU] COG3215 Tfp pilus assembly protein PilZ
 2  2  4  5 ----------------------|----||-|-------   9 [U]  COG3267 Type II secretory pathway, component ExeA (predicted ATPase)
 1  2  4  5 ---------------------------||-|----|--   6 [U]  COG3297 Type II secretory pathway, component PulL
 1  1  3  8 ---------------------------||-|-------   8 [NUO] COG3418 Flagellar biosynthesis/type III secretory pathway chaperone
 1  2  4  4 ---------------------------|-|--||----   9 [NU] COG3419 Tfp pilus assembly protein, tip-associated adhesin PilY1
 3  7 10 15 ---|-------------------|--|-||--|-||||  27 [U]  COG3451 Type IV secretory pathway, VirB4 components
 1  3  4 13 ----------------------------|--|-|--|-  55 [MU] COG3468 Type V secretory pathway, adhesin AidA
 1  4  6 11 -----------------------------|--|-||||  25 [U]  COG3504 Type IV secretory pathway, VirB9 components
 3  6  8 12 ----------------|------|----||--|-|-||  21 [U]  COG3505 Type IV secretory pathway, VirD4 components
 1  1  3  7 ---------------------------|||-------- 134 [NU] COG3539 P pilus assembly protein, pilin FimA
 2  5  8 12 ----------------||---------||-|-||--|-  21 [UNTP] COG3678 P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein
 1  3  4  5 -----------------------------|--|--||-   7 [U]  COG3701 Type IV secretory pathway, TrbF components
 1  2  4  7 -----------------------------|-----|||   9 [U]  COG3702 Type IV secretory pathway, VirB3 components
 1  2  4  8 -----------------------------|-----|||  17 [U]  COG3704 Type IV secretory pathway, VirB6 components
 1  3  4  9 -----------------------------|----|-||  16 [U]  COG3736 Type IV secretory pathway, component VirB8
 1  3  4  6 ---------------------------|----|--||-  10 [U]  COG3745 Flp pilus assembly protein CpaB
 1  3  5  8 -----------------------------|--|--|||  13 [U]  COG3838 Type IV secretory pathway, VirB2 components (pilins)
 2  5  5  7 -------------------------|---|--|-|-|-  12 [U]  COG3843 Type IV secretory pathway, VirD2 components (relaxase)
 1  4  4  6 -----------------------------|--|-|-|-  10 [U]  COG3846 Type IV secretory pathway, TrbL components
 1  3  5  7 ---------------------------|---||--||-  16 [U]  COG3847 Flp pilus assembly protein, pilin Flp
 1  3  4  6 ---------------------------|-|--|---|-   8 [U]  COG3946 Type IV secretory pathway, VirJ component
 2  4  5  6 ---||--||-|---------------------------   6 [U]  COG4023 Preprotein translocase subunit Sec61beta
 1  1  2  7 ------------------------||------------   8 [U]  COG4473 Predicted ABC-type exoprotein transport system, permease component
 1  1  2  7 ------------------------||------------   7 [U]  COG4537 Competence protein ComGC
 2  4  5  9 --------------------|------||---|---|-  13 [U]  COG4669 Type III secretory pathway, lipoprotein EscJ
 1  2  4  5 ---------------------------|-|--||----   8 [NU] COG4726 Tfp pilus assembly protein PilX
 2  4  5  9 --------------------|------||---|---|-  13 [U]  COG4789 Type III secretory pathway, component EscV
 1  3  4  7 ---------------------------||---|---|-  11 [U]  COG4790 Type III secretory pathway, component EscR
 2  4  5  9 --------------------|------||---|---|-  15 [U]  COG4791 Type III secretory pathway, component EscT
 1  2  3  6 ---------------------------||-------|-   7 [U]  COG4792 Type III secretory pathway, component EscU
 2  4  5  9 --------------------|------||---|---|-  13 [U]  COG4794 Type III secretory pathway, component EscS
 1  3  7 12 ---------------------------||||||--|--  16 [U]  COG4795 Type II secretory pathway, component PulJ
 4  6 11 17 --------------||||---------|||||||----  21 [U]  COG4796 Type II secretory pathway, component HofQ
 2  2  3 10 ------------------------||--------|---  10 [U]  COG4940 Competence protein ComGF
 1  3  3  4 -----------------------------|--|---|-   5 [OU] COG4959 Type IV secretory pathway, protease TraF
 1  3  6  8 ---------------------------||--||--||-  10 [OU] COG4960 Flp pilus assembly protein, protease CpaA
 1  3  6  8 ---------------------------||--||--||-  27 [U]  COG4961 Flp pilus assembly protein TadG
 4  9 13 18 ||---|-|--------------||---|||-||--||-  27 [U]  COG4962 Flp pilus assembly protein, ATPase CpaF
 1  3  6  8 ---------------------------||--||--||-  12 [U]  COG4963 Flp pilus assembly protein, ATPase CpaE
 2  4  6  8 ------------------|--------|---||--||-  13 [U]  COG4964 Flp pilus assembly protein, secretin CpaC
 2  4  7 11 ----------------------|----||--||--||-  15 [U]  COG4965 Flp pilus assembly protein TadB
 1  2  4  5 ---------------------------|-|--||----   9 [NU] COG4966 Tfp pilus assembly protein PilW
 1  2  6 11 ---------------------------||||-||----  14 [NU] COG4967 Tfp pilus assembly protein PilV
 1  2  5  6 ---------------------------|-||-||----  12 [NU] COG4968 Tfp pilus assembly protein PilE
 2  3  8 14 --------------|------------|||||||----  41 [NU] COG4969 Tfp pilus assembly protein, major pilin PilA
 1  3  6  7 ---------------------------|-||-||--|-  14 [NU] COG4970 Tfp pilus assembly protein FimT
 3  5  8  9 ----------------|||--------|-||-||----   9 [NU] COG4972 Tfp pilus assembly protein, ATPase PilM
 1  2  5  6 ---------------------------|-||-||----   8 [NU] COG5008 Tfp pilus assembly protein, ATPase PilU
 1  3  6  8 ---------------------------||--||--||-  11 [U]  COG5010 Flp pilus assembly protein TadD, contains TPR repeats
 2  3  3  3 -----------|||------------------------   7 [U]  COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3
 2  3  3  3 -----------|||------------------------   7 [U]  COG5030 Clathrin adaptor complex, small subunit
 2  3  3  3 -----------|||------------------------  22 [TDBLU] COG5032 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family
 2  3  3  3 -----------|||------------------------   5 [U]  COG5043 Vacuolar protein sorting-associated protein
 2  3  3  3 -----------|||------------------------   5 [U]  COG5047 Vesicle coat complex COPII, subunit SEC23
 2  3  3  3 -----------|||------------------------   5 [U]  COG5052 Protein involved in membrane traffic
 2  3  3  3 -----------|||------------------------   5 [U]  COG5058 Protein transporter of the TRAM (translocating chain-associating membrane) superfamily, longevity assurance factor
 2  3  3  3 -----------|||------------------------   4 [OU] COG5061 Oxidoreductin, endoplasmic reticulum membrane-associated protein involved in disulfide bond formation
 2  3  3  3 -----------|||------------------------   4 [U]  COG5064 Karyopherin (importin) alpha
 2  3  3  3 -----------|||------------------------   4 [U]  COG5066 VAMP-associated protein involved in inositol metabolism
 2  3  3  3 -----------|||------------------------   5 [GOU] COG5070 Nucleotide-sugar transporter
 2  3  3  3 -----------|||------------------------   5 [U]  COG5073 Vacuolar import and degradation protein
 2  3  3  3 -----------|||------------------------   4 [U]  COG5074 t-SNARE complex subunit, syntaxin
 2  3  3  3 -----------|||------------------------   4 [UD] COG5079 Nuclear protein export factor
 2  3  3  3 -----------|||------------------------   5 [U]  COG5080 Rab GTPase interacting factor, Golgi membrane protein
 2  3  3  3 -----------|||------------------------   9 [OU] COG5082 Arginine methyltransferase-interacting protein, contains RING Zn-finger
 2  3  3  3 -----------|||------------------------  10 [U]  COG5096 Vesicle coat complex, various subunits
 2  3  3  3 -----------|||------------------------   3 [U]  COG5100 Nuclear pore protein
 2  3  3  3 -----------|||------------------------   6 [U]  COG5101 Nuclear transport receptor CRM1/MSN5 (importin beta superfamily)
 2  3  3  3 -----------|||------------------------   3 [U]  COG5102 Membrane protein involved in ER to Golgi transport
 2  3  3  3 -----------|||------------------------   3 [JU] COG5117 Protein involved in the nuclear export of pre-ribosomes
 2  3  3  3 -----------|||------------------------   3 [U]  COG5120 Membrane protein involved in Golgi transport
 2  3  3  3 -----------|||------------------------   3 [U]  COG5122 Transport protein particle (TRAPP) complex subunit
 2  3  3  3 -----------|||------------------------   3 [U]  COG5128 Transport protein particle (TRAPP) complex subunit
 2  3  3  3 -----------|||------------------------   3 [UT] COG5130 Prenylated rab acceptor 1 and related proteins
 2  3  3  3 -----------|||------------------------  10 [U]  COG5143 Synaptobrevin/VAMP-like protein
 2  3  3  3 -----------|||------------------------   3 [UI] COG5153 Putative lipase essential for disintegration of autophagic bodies inside the vacuole
 2  3  3  3 -----------|||------------------------  11 [U]  COG5158 Proteins involved in synaptic transmission and general secretion, Sec1 family
 2  3  3  3 -----------|||------------------------   3 [U]  COG5167 Protein involved in vacuole import and degradation
 2  3  3  3 -----------|||------------------------   3 [U]  COG5171 Ran GTPase-activating protein (Ran-binding protein)
 2  3  3  3 -----------|||------------------------   3 [U]  COG5173 Exocyst complex subunit SEC6
 2  3  3  3 -----------|||------------------------   3 [U]  COG5196 ER lumen protein retaining receptor
 2  3  3  3 -----------|||------------------------   3 [U]  COG5215 Karyopherin (importin) beta
 2  3  3  3 -----------|||------------------------   3 [U]  COG5232 Preprotein translocase subunit Sec62
 2  3  3  3 -----------|||------------------------   3 [U]  COG5233 Peripheral Golgi membrane protein
 2  3  3  3 -----------|||------------------------   3 [U]  COG5240 Vesicle coat complex COPI, gamma subunit
 2  3  3  3 -----------|||------------------------   3 [U]  COG5249 Golgi protein involved in Golgi-to-ER retrieval
 1  3  3  4 -----------------------------|--|---|-   4 [NU] COG5268 Type IV secretory pathway, TrbD component
 4  6  9 16 --|----------------|----|---||-|||--|-  25 [UW] COG5295 Autotransporter adhesin
 2  3  3  3 -----------|||------------------------   4 [U]  COG5308 Nuclear pore complex subunit
 1  3  3  4 -----------------------------|--|---|-   6 [U]  COG5314 Conjugal transfer/entry exclusion protein
 2  3  3  3 -----------|||------------------------   6 [U]  COG5325 t-SNARE complex subunit, syntaxin
 2  3  3  3 -----------|||------------------------  14 [U]  COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport
 2  3  3  3 -----------|||------------------------  13 [UR] COG5391 Phox homology (PX) domain protein
 2  3  3  3 -----------|||------------------------   3 [U]  COG5407 Preprotein translocase subunit Sec63
 2  3  3  3 -----------|||------------------------   3 [U]  COG5538 Preprotein translocase subunit Sec66