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14 28 38 66 |||||||||||||||||||||||||||||||||||||| 79 [K] COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit
14 28 38 66 |||||||||||||||||||||||||||||||||||||| 92 [K] COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit
12 25 35 63 |||||||||||---|||||||||||||||||||||||| 71 [K] COG0195 Transcription elongation factor
14 27 37 65 ||-||||||||||||||||||||||||||||||||||| 68 [K] COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit
13 26 36 64 |||||||||||-|-|||||||||||||||||||||||| 72 [K] COG0250 Transcription antiterminator
9 15 23 44 --------------||||||-||||||||||||||||| 67 [TK] COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases
9 18 20 32 |||---||----|-|-||||--|-|-|||--||-|-|- 47 [OK] COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase
13 26 36 58 |||||||-|||||||||||||-|||||||||||||||| 542 [KR] COG0454 Histone acetyltransferase HPA2 and related acetyltransferases
12 23 31 55 |||-|-|--|-||||-||||-||||||||||||||||| 218 [LKJ] COG0513 Superfamily II DNA and RNA helicases
11 19 25 41 ---||---||-||||-|||-|-|||||||||||-|-|- 407 [RTKL] COG0515 Serine/threonine protein kinase
12 21 27 41 --|||||--|||||-||||||-||||||||||----|- 109 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family
13 20 27 48 ---|-------||||||||||||||||||||||||||- 62 [K] COG0557 Exoribonuclease R
10 16 24 50 --------------|||||||||||||||||||||||| 103 [K] COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
11 18 26 52 -----------||-|||||||||||||||||||||||| 57 [K] COG0571 dsRNA-specific ribonuclease
8 16 23 40 ||----||------|-||||--||||-||||||||||- 904 [K] COG0583 Transcriptional regulator
10 22 31 48 |||||||||||---||||||--||||-||||||||||- 281 [K] COG0640 Predicted transcriptional regulators
9 14 22 43 --------------|||||||-||||-||||||||||| 429 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
10 16 24 50 --------------|||||||||||||||||||||||| 50 [K] COG0781 Transcription termination factor
7 12 20 46 ---------------|--|-|||||||||||||||||| 83 [K] COG0782 Transcription elongation factor
8 14 22 42 --|---|-------|-||||--||||-||||||||||| 178 [K] COG0789 Predicted transcriptional regulators
7 11 14 23 ----||--|||||---|-----|-||-----|--|-|- 31 [K] COG0819 Putative transcription activator
11 19 25 38 -----|||||||||||--||--|||||||-|||-||-- 49 [K] COG0846 NAD-dependent protein deacetylases, SIR2 family
4 13 16 23 ||||-||||||------------||---|-----|||- 30 [K] COG0864 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain
11 17 21 32 --|||||-||||||--|-||-|||||--|-|------- 64 [KL] COG1061 DNA or RNA helicases of superfamily II
4 12 14 16 ||||||||||||||------------------------ 19 [K] COG1095 DNA-directed RNA polymerase, subunit E'
9 13 20 41 --------------||--|||||||--||||||||||| 41 [K] COG1158 Transcription termination factor
10 15 22 38 ----||--|||||--||-||--||||-||-|||--||- 107 [KE] COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs
8 12 14 25 --------------||||--|||||--||-|-|-|--- 45 [K] COG1191 DNA-directed RNA polymerase specialized sigma subunit
9 14 22 45 ---------------|||||||||||-||||||||||| 45 [LK] COG1197 Transcription-repair coupling factor (superfamily II helicase)
10 20 28 43 ||||||--|||||||-||-|--||||-|||||||-|-- 61 [KL] COG1199 Rad3-related DNA helicases
9 14 22 43 --------------||||||-|||||-||||||||||| 43 [LK] COG1200 RecG-like helicase
4 7 9 14 ---------------|||-----||--||-|-|----- 28 [KT] COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
4 7 9 10 -----|||||||||------------------------ 13 [K] COG1224 DNA helicase TIP49, TBP-interacting protein
7 15 16 18 ||||||||||-|||-|---|---|-------------- 18 [KB] COG1243 Histone acetyltransferase
8 11 19 37 ---|----------||--||--||||-|||||||-||| 127 [K] COG1278 Cold shock proteins
11 21 24 33 ||||||||||||||-|||||-|-|||--------|--- 34 [K] COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP
4 12 13 15 |||||||||-||||------------------------ 15 [K] COG1308 Transcription factor homologous to NACalpha-BTF3
10 20 27 44 |-||-||--|----||||||--|||||||||||||||- 592 [K] COG1309 Transcriptional regulator
6 8 9 18 ---------------||||--|||||------------ 46 [K] COG1316 Transcriptional regulator
4 7 8 9 -|---||||-|---||---------------------- 10 [K] COG1318 Predicted transcriptional regulators
9 18 22 36 |||||||||||----|--|-||||||--||------|- 55 [K] COG1321 Mn-dependent transcriptional regulator
8 11 18 36 ---------------|-||||-||||-|||||||-||- 36 [K] COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains
5 5 7 16 ------------------|--||-|----------||| 17 [K] COG1329 Transcriptional regulators, similar to M. xanthus CarD
2 9 11 13 |||||||||||--------------------------- 13 [KH] COG1339 Transcriptional regulator of a riboflavin/FAD biosynthetic operon
7 10 15 29 --------------||--||--||||-||-||||--|- 145 [KG] COG1349 Transcriptional regulators of sugar metabolism
4 11 13 15 |||||||||||-------|-----|------------- 36 [K] COG1378 Predicted transcriptional regulators
9 17 21 38 --|-|||--------|||||-|||||||-|--||-||- 43 [K] COG1386 Predicted transcriptional regulator containing the HTH domain
2 9 11 13 |||||||||||--------------------------- 13 [K] COG1395 Predicted transcriptional regulator
11 15 23 40 |-|-----|-----|||-||-|||||-|||||||-||| 387 [K] COG1396 Predicted transcriptional regulators
4 12 14 16 ||||||||||||||------------------------ 39 [K] COG1405 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB
7 10 14 25 ---|----------||--|---|-|--||-|||-|||- 99 [K] COG1414 Transcriptional regulator
7 13 15 32 ---------------|||-||-|||||--|--|-|||- 32 [K] COG1420 Transcriptional regulator of heat shock gene
6 7 10 23 ---------------|--|-|-||||--|-||------ 30 [K] COG1438 Arginine repressor
10 18 27 49 ||-|-||-|||---|-|-|-||||||-||||-|||||| 111 [K] COG1475 Predicted transcriptional regulators
5 12 13 18 ||||-||---------|-|----|||-|-------|-- 34 [K] COG1476 Predicted transcriptional regulators
1 7 7 8 |||||-||------------------------------ 8 [K] COG1497 Predicted transcriptional regulator
5 9 14 28 --------------|-----||-||--||||-|||||- 30 [K] COG1508 DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog
3 5 5 8 -|---|------------------|-------|---|- 11 [K] COG1510 Predicted transcriptional regulators
9 15 17 25 --------------||||||-||||-||-|--||||-- 25 [K] COG1521 Putative transcriptional regulator, homolog of Bvg accessory factor
6 16 23 37 |||||||||||-------|---|||--||-||||-||- 250 [K] COG1522 Transcriptional regulators
1 5 5 5 |||---||------------------------------ 5 [KG] COG1548 Predicted transcriptional regulator/sugar kinase
2 7 9 11 ||--|||||||--------------------------- 15 [K] COG1581 Archaeal DNA-binding protein
4 11 13 15 |||||||-||||||------------------------ 29 [K] COG1594 DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS
8 12 19 34 ---------------|||||-|||||-|||||||-||- 172 [K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
6 10 16 31 ---------------|--||--|||||||||||--||- 277 [K] COG1609 Transcriptional regulators
4 12 14 16 ||||||||||||||------------------------ 16 [K] COG1644 DNA-directed RNA polymerase, subunit N (RpoN/RPB10)
4 8 13 23 --||-||-----------|----|||-|||||------ 23 [K] COG1654 Biotin operon repressor
4 11 13 14 ||||-|||||||||------------------------ 15 [K] COG1675 Transcription initiation factor IIE, alpha subunit
4 6 13 27 ------------------|-|-|----|||||||-||| 27 [K] COG1678 Putative transcriptional regulator
9 17 22 36 |-|||||-|||----||-||--||||--|-|-|--||- 102 [K] COG1695 Predicted transcriptional regulators
2 8 10 12 -||||||||||--------------------------- 12 [K] COG1709 Predicted transcriptional regulator
6 8 9 15 ----|----|-----|||----||||------------ 24 [K] COG1725 Predicted transcriptional regulators
8 18 25 37 |||||-|--||-----||||--||||-||||||-|||- 114 [K] COG1733 Predicted transcriptional regulators
4 8 14 28 ---------------|------|||||||-||||-||- 97 [K] COG1737 Transcriptional regulators
12 25 35 58 |||||||||||||||||||--|||||-||||||||||| 58 [K] COG1758 DNA-directed RNA polymerase, subunit K/omega
4 12 14 16 ||||||||||||||------------------------ 20 [K] COG1761 DNA-directed RNA polymerase, subunit L
1 6 6 8 |-|||||------------------------------- 10 [K] COG1777 Predicted transcriptional regulators
8 11 16 30 ----|----|-----|--||--||||-||-|-||-||- 143 [K] COG1802 Transcriptional regulators
4 12 14 16 ||||||||||||||------------------------ 17 [K] COG1813 Predicted transcription factor, homolog of eukaryotic MBF1
7 10 13 21 --|-----------|-|||---|||--||-|----||- 30 [KT] COG1842 Phage shock protein A (IM30), suppresses sigma54-dependent transcription
9 19 27 45 |||||||||||----||-||--||||-||||-||-||- 336 [K] COG1846 Transcriptional regulators
11 17 22 39 ---||-|-|-|---||||||-||||||-|-||---||- 155 [KG] COG1940 Transcriptional regulator/sugar kinase
4 5 5 10 ---------------|---|---||---|--------- 12 [K] COG1954 Glycerol-3-phosphate responsive antiterminator (mRNA-binding)
4 11 13 15 |-||||||||||||------------------------ 66 [K] COG1958 Small nuclear ribonucleoprotein (snRNP) homolog
8 13 21 36 --------------||||||--||||-||||||||||| 86 [K] COG1959 Predicted transcriptional regulator
6 10 16 30 ---------------||||---||||-||||||--||- 50 [KT] COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases)
5 7 9 18 --|--|---------|------||||--|-|------- 24 [KT] COG1983 Putative stress-responsive transcriptional regulator
4 12 14 16 |||||||||||||----------|-------------- 16 [K] COG1996 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger)
6 11 13 21 ---|-||-|||-----||----|||---|-------|- 47 [K] COG2002 Regulators of stationary/sporulation gene expression
4 12 14 16 ||||||||||||||------------------------ 16 [K] COG2012 DNA-directed RNA polymerase, subunit H, RpoH/RPB5
2 9 11 13 |||||||||||--------------------------- 13 [K] COG2093 DNA-directed RNA polymerase, subunit E''
4 12 14 16 ||||||||||||||------------------------ 28 [K] COG2101 TATA-box binding protein (TBP), component of TFIID and TFIIIB
8 13 19 33 -----------|||--|--|-|||||||||||||--|- 33 [K] COG2183 Transcriptional accessory protein
4 7 12 26 ------------------|---|||--||-||||-||- 126 [K] COG2186 Transcriptional regulators
5 9 13 28 ----------------|-|---|||||||-|-|--||- 121 [K] COG2188 Transcriptional regulators
5 9 16 32 ----------------|||---||||-|||||||-||- 199 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
6 11 18 33 ---------------|||-|--||||-||||||||||- 427 [K] COG2207 AraC-type DNA-binding domain-containing proteins
8 11 12 18 ---------------|||-||||||--|--|-----|- 33 [TK] COG2208 Serine phosphatase RsbU, regulator of sigma subunit
6 7 8 12 ----|-----------|||---|-|---|-|------- 19 [K] COG2345 Predicted transcriptional regulator
5 9 14 24 ------------------||--|||--||||-|||||- 39 [K] COG2378 Predicted transcriptional regulator
3 6 9 21 ------------------|----|||--|-|||---|- 47 [K] COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain
2 6 8 8 ||||--|-|||--------------------------- 8 [K] COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains
2 4 4 8 -----------------------||---|----|---- 8 [K] COG2732 Barstar, RNAse (barnase) inhibitor
6 9 11 25 ----------------|-||--|||||-------|||- 25 [K] COG2740 Predicted nucleic-acid-binding protein implicated in transcription termination
4 6 8 13 --------------||-------||--||-|-|----- 13 [KNU] COG2747 Negative regulator of flagellin synthesis (anti-sigma28 factor)
7 11 15 28 -------||-------|||---||||-||-|-|--||- 155 [K] COG2771 DNA-binding HTH domain-containing proteins
4 6 8 9 -----------|------|-----|--|-|--|--||- 10 [K] COG2808 Transcriptional regulator
6 7 7 7 --|--|------------||--|---|-------|--- 13 [K] COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen
1 2 7 14 ---------------------------|||||||---- 14 [KL] COG2901 Factor for inversion stimulation Fis, transcriptional activator
3 3 5 10 ----------------------||---||-|------- 13 [K] COG2909 ATP-dependent transcriptional regulator
3 5 10 17 -------------------|----||-|||-|-|-||- 33 [K] COG2932 Predicted transcriptional regulator
2 4 8 13 ----------------|-----------|||-||--|| 20 [K] COG2944 Predicted transcriptional regulator
2 2 5 10 --------------------|-------||||------ 10 [K] COG2973 Trp operon repressor
1 1 3 8 ----------------------------|-||------ 8 [KE] COG3060 Transcriptional regulator of met regulon
2 5 12 19 -----------------------|||-||-||||-||| 20 [K] COG3070 Regulator of competence-specific genes
1 1 3 7 ---------------------------||-|------- 7 [K] COG3160 Regulator of sigma D
3 6 11 23 -------------------|---|||-||||-|--||- 42 [KT] COG3279 Response regulator of the LytR/AlgR family
1 1 4 9 ---------------------------||-||------ 10 [KE] COG3283 Transcriptional regulator of aromatic amino acids metabolism
3 6 9 13 ----------------|------||--||-|-|--||- 16 [QK] COG3284 Transcriptional activator of acetoin/glycerol metabolism
1 3 5 11 ----------------------------|||-|---|- 25 [K] COG3311 Predicted transcriptional regulator
4 5 5 6 ---------|------------|-|---|-------|- 7 [K] COG3327 Phenylacetic acid-responsive transcriptional repressor
1 2 3 10 ------------------------|||----------- 10 [K] COG3343 DNA-directed RNA polymerase, delta subunit
2 6 6 6 -|||--||-|---------------------------- 20 [K] COG3355 Predicted transcriptional regulator
2 5 6 6 ---|-|||||---------------------------- 6 [K] COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon
1 2 3 8 ----------------------------|--|-|---- 11 [K] COG3423 Predicted transcriptional regulator
2 5 7 8 -||-|-|-|||--------------------------- 16 [K] COG3432 Predicted transcriptional regulator
6 7 9 9 ---------------||||--|-|---|-||------- 16 [KT] COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain
2 4 6 8 -----------------------|||--|--|-|---- 11 [K] COG3561 Phage anti-repressor protein
3 5 7 11 --------------|------|-----||-|-|---|- 21 [KT] COG3604 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains
5 12 16 24 -||||||-|||-----|-----|-----||--|--||- 43 [K] COG3609 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain
2 3 7 10 ------------------------||-|||-|----|- 21 [K] COG3617 Prophage antirepressor
1 5 5 7 --|||||------------------------------- 7 [K] COG3620 Predicted transcriptional regulator with C-terminal CBS domains
1 3 6 6 ----------------------------||-||--||- 9 [K] COG3636 Predicted transcriptional regulator
4 6 7 10 ----------------|-----||||-|-------|-- 15 [K] COG3655 Predicted transcriptional regulator
5 7 8 14 -----|----------||----||||---------|-- 17 [K] COG3682 Predicted transcriptional regulator
3 4 5 11 ----------------------|-|---|-|-----|- 32 [K] COG3710 DNA-binding winged-HTH domains
4 5 6 15 -------------------|--||||--|--------- 59 [K] COG3711 Transcriptional antiterminator
1 1 3 7 ----------------------------|-||------ 10 [K] COG3722 Transcriptional regulator
3 5 6 11 --------------|--------||--||---|----- 20 [KT] COG3829 Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains
2 3 6 11 -----------------------||--||-||------ 11 [KT] COG3835 Sugar diacid utilization regulator
2 3 3 4 ----|-|--|---------------------------- 4 [K] COG3888 Predicted transcriptional regulator
1 3 4 6 ---------------------------|----||--|- 6 [K] COG3901 Regulator of nitric oxide reductase transcription
1 2 4 6 ---------------------------|-|-----||- 8 [K] COG3905 Predicted transcriptional regulator
2 3 3 4 -----------------------||---|--------- 7 [K] COG3933 Transcriptional antiterminator
1 4 4 4 |||----|------------------------------ 4 [K] COG4008 Predicted metal-binding transcription factor
1 2 3 8 -----------------------|||------------ 8 [K] COG4109 Predicted transcriptional regulator containing CBS domains
2 2 2 4 ------------------------|-----------|- 4 [K] COG4189 Predicted transcriptional regulator
2 3 3 3 ---|-----------------------|--------|- 6 [K] COG4190 Predicted transcriptional regulator
2 3 3 3 -----------------------||----------|-- 7 [KT] COG4219 Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component
3 5 5 5 --|-----------------------|--|--|--|-- 5 [K] COG4271 Predicted nucleotide-binding protein containing TIR -like domain
1 2 3 8 -----------------------|||------------ 8 [K] COG4463 Transcriptional repressor of class III stress genes
1 2 3 8 -----------------------|||------------ 9 [K] COG4465 Pleiotropic transcriptional repressor
1 2 2 4 -----------------------||------------- 4 [OTK] COG4512 Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide
3 3 5 9 ----------------------|-||--|-|------- 19 [KT] COG4565 Response regulator of citrate/malate metabolism
1 3 5 8 ---------------------------|-|--|--||- 10 [TK] COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
1 1 3 7 ---------------------------||-|------- 7 [K] COG4568 Transcriptional antiterminator
3 4 5 11 ----------------------|-|---|--|----|- 11 [K] COG4578 Glucitol operon activator
1 2 2 3 ----------------------------------|-|- 4 [KL] COG4646 DNA methylase
1 2 3 6 ---------------------------||---|----- 6 [KT] COG4650 Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain
3 3 3 3 -----------|----|-------------------|- 3 [TK] COG4725 Transcriptional activator, adenine-specific DNA methyltransferase
1 3 3 4 --|-|-|------------------------------- 7 [K] COG4738 Predicted transcriptional regulator
1 3 3 3 |-|---|------------------------------- 31 [K] COG4742 Predicted transcriptional regulator
1 1 3 9 ----------------------------|-||------ 9 [K] COG4776 Exoribonuclease II
1 3 3 3 -||---|------------------------------- 3 [K] COG4800 Predicted transcriptional regulator with an HTH domain
1 1 1 3 ------------------------|------------- 3 [K] COG4903 Genetic competence transcription factor
2 3 3 3 -----------------------||---|--------- 3 [TK] COG4936 Predicted sensor domain
1 3 4 5 ---------------------------|----|--||- 9 [K] COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain
1 1 2 5 -----------------------------------||- 17 [K] COG4957 Predicted transcriptional regulator
1 3 5 9 ---------------------------||---|--||- 45 [K] COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain
5 7 7 8 |-|-----|-------|-----|||------------- 17 [KT] COG4978 Transcriptional regulator, effector-binding domain/component
1 2 7 14 ---------------------------|||||||---- 14 [K] COG5007 Predicted transcriptional regulator, BolA superfamily
2 3 3 3 -----------|||------------------------ 10 [K] COG5025 Transcription factor of the Forkhead/HNF3 family
2 3 3 3 -----------|||------------------------ 6 [K] COG5033 Transcription initiation factor IIF, auxiliary subunit
2 3 3 3 -----------|||------------------------ 6 [DKT] COG5035 Cell cycle control protein
2 3 3 3 -----------|||------------------------ 5 [TDK] COG5041 Casein kinase II, beta subunit
2 3 3 3 -----------|||------------------------ 8 [K] COG5068 Regulator of arginine metabolism and related MADS box-containing transcription factors
2 3 3 3 -----------|||------------------------ 21 [BK] COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain
2 3 3 3 -----------|||------------------------ 3 [K] COG5090 Transcription initiation factor IIF, small subunit (RAP30)
2 3 3 3 -----------|||------------------------ 3 [K] COG5094 Transcription initiation factor TFIID, subunit TAF9 (also component of histone acetyltransferase SAGA)
2 3 3 3 -----------|||------------------------ 3 [K] COG5095 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA)
2 3 3 3 -----------|||------------------------ 3 [K] COG5097 RNA polymerase II transcriptional regulation mediator
2 3 3 3 -----------|||------------------------ 3 [DK] COG5103 Cell division control protein, negative regulator of transcription
2 3 3 3 -----------||-----------------------|- 3 [K] COG5108 Mitochondrial DNA-directed RNA polymerase
2 3 3 3 -----------|||------------------------ 3 [K] COG5111 DNA-directed RNA polymerase III, subunit C34
2 3 3 3 -----------|||------------------------ 3 [K] COG5118 Transcription initiation factor TFIIIB, Bdp1 subunit
2 3 3 3 -----------|||------------------------ 3 [K] COG5123 Transcription initiation factor IIA, gamma subunit
2 3 3 3 -----------|||------------------------ 3 [KD] COG5132 Cell cycle control protein, G10 family
2 3 3 3 -----------|||------------------------ 3 [KB] COG5137 Histone chaperone involved in gene silencing
2 3 3 3 -----------|||------------------------ 3 [KL] COG5144 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB2
2 3 3 3 -----------|||------------------------ 10 [KAD] COG5147 Myb superfamily proteins, including transcription factors and mRNA splicing factors
2 3 3 3 -----------|||------------------------ 3 [K] COG5149 Transcription initiation factor IIA, large chain
2 3 3 3 -----------|||------------------------ 3 [K] COG5150 Class 2 transcription repressor NC2, beta subunit (Dr1)
2 3 3 3 -----------|||------------------------ 3 [KL] COG5151 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1
2 3 3 3 -----------|||------------------------ 3 [K] COG5157 RNA polymerase II assessory factor
2 3 3 3 -----------|||------------------------ 3 [K] COG5162 Transcription initiation factor TFIID, subunit TAF10 (also component of histone acetyltransferase SAGA)
2 3 3 3 -----------|||------------------------ 3 [K] COG5164 Transcription elongation factor
2 3 3 3 -----------|||------------------------ 3 [KLB] COG5165 Nucleosome-binding factor SPN, POB3 subunit
2 3 3 3 -----------|||------------------------ 10 [K] COG5169 Heat shock transcription factor
2 3 3 3 -----------|||------------------------ 3 [K] COG5174 Transcription initiation factor IIE, beta subunit
2 3 3 3 -----------|||------------------------ 3 [K] COG5175 Transcriptional repressor
2 3 3 3 -----------|||------------------------ 3 [K] COG5179 Transcription initiation factor TFIID, subunit TAF1
2 3 3 3 -----------|||------------------------ 3 [KD] COG5189 Putative transcriptional repressor regulating G2/M transition
2 3 3 3 -----------|||------------------------ 12 [K] COG5190 TFIIF-interacting CTD phosphatases, including NLI-interacting factor
2 3 3 3 -----------|||------------------------ 3 [K] COG5204 Transcription elongation factor SPT4
2 3 3 3 -----------|||------------------------ 3 [K] COG5208 CCAAT-binding factor, subunit C
2 3 3 3 -----------|||------------------------ 3 [K] COG5211 RNA polymerase II-interacting protein involved in transcription start site selection
2 3 3 3 -----------|||------------------------ 3 [DKL] COG5220 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3
2 3 3 3 -----------|||------------------------ 3 [K] COG5221 Dopey and related predicted leucine zipper transcription factors
2 3 3 3 -----------|||------------------------ 3 [K] COG5224 CCAAT-binding factor, subunit B
2 3 3 3 -----------|||------------------------ 3 [KL] COG5242 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4
2 3 3 3 -----------|||------------------------ 3 [K] COG5247 Class 2 transcription repressor NC2, alpha subunit (DRAP1 homolog)
2 3 3 3 -----------|||------------------------ 3 [K] COG5248 Transcription initiation factor TFIID, subunit TAF13
2 3 3 3 -----------|||------------------------ 3 [K] COG5250 RNA polymerase II, fourth largest subunit
2 3 3 3 -----------|||------------------------ 3 [K] COG5251 Transcription initiation factor TFIID, subunit TAF11
2 3 3 3 -----------|||------------------------ 5 [BK] COG5259 RSC chromatin remodeling complex subunit RSC8
2 3 3 3 -----------|||------------------------ 3 [K] COG5290 IkappaB kinase complex, IKAP component
2 3 3 3 -----------|||------------------------ 3 [K] COG5296 Transcription factor involved in TATA site selection and in elongation by RNA polymerase II
2 3 3 3 -----------|||------------------------ 9 [DKL] COG5333 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit
2 3 3 5 ---|-|----------------|--------------- 7 [K] COG5340 Predicted transcriptional regulator
2 3 3 3 -----------|||------------------------ 3 [KLB] COG5406 Nucleosome binding factor SPN, SPT16 subunit
2 3 3 3 -----------|||------------------------ 3 [K] COG5414 TATA-binding protein-associated factor
2 2 3 5 ----------------------|------------||- 16 [K] COG5450 Transcription regulator of the Arc/MetJ class
2 3 3 7 ----------------|-----------|-------|- 7 [K] COG5499 Predicted transcription regulator containing HTH domain
2 3 3 3 -----------|||------------------------ 14 [K] COG5576 Homeodomain-containing transcription factor
2 3 3 3 -----------|||------------------------ 3 [K] COG5601 General negative regulator of transcription subunit
2 3 3 3 -----------|||------------------------ 3 [K] COG5624 Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA)
2 3 4 5 -----||-|-|--------------------------- 5 [K] COG5625 Predicted transcription regulator containing HTH domain
1 2 2 3 --------------------------------|---|- 3 [K] COG5631 Predicted transcription regulator, contains HTH domain (MarR family)
2 3 3 3 -----------|||------------------------ 13 [K] COG5641 GATA Zn-finger-containing transcription factor
5 7 7 11 ----------------||---||-|-------|---|- 20 [K] COG5662 Predicted transmembrane transcriptional regulator (anti-sigma factor)
2 3 3 3 -----------|||------------------------ 4 [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit