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Report for CCDS9615.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9615.1 Public Homo sapiens 14 IRF9 24 110 108 CCDS HistoryNCBI Gene:10379Re-query CCDS DB by CCDS ID:9615.1Re-query CCDS DB by GeneID:10379See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9615.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000396864.8 ENSP00000380073.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000396864.8Link to Ensembl Protein Viewer:ENSP00000380073.3Re-query CCDS DB by Nucleotide ID:ENST00000396864Re-query CCDS DB by Protein ID:ENSP00000380073
Original member Current member EBI ENST00000699071.1 ENSP00000514112.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000699071.1Link to Ensembl Protein Viewer:ENSP00000514112.1Re-query CCDS DB by Nucleotide ID:ENST00000699071Re-query CCDS DB by Protein ID:ENSP00000514112
Original member Current member NCBI NM_006084.5 NP_006075.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006084.5Link to Protein Sequence:NP_006075.3Re-query CCDS DB by Nucleotide ID:NM_006084Re-query CCDS DB by Protein ID:NP_006075Link to BLAST:NP_006075.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006075.3 393 Q00978 393 100% 0 0

Chromosomal Locations for CCDS 9615.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 24162145 24162324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24162966 24163149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24163378 24163508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24163878 24163959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24164063 24164134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24164614 24164955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24165847 24165962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24166122 24166196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1182 nt):
ATGGCATCAGGCAGGGCACGCTGCACCCGAAAACTCCGGAACTGGGTGGTGGAGCAAGTGGAGAGTGGGC
AGTTTCCCGGAGTGTGCTGGGATGATACAGCTAAGACCATGTTCCGGATTCCCTGGAAACATGCAGGCAA
GCAGGACTTCCGGGAGGACCAGGATGCTGCCTTCTTCAAGGCCTGGGCAATATTTAAGGGAAAGTATAAG
GAGGGGGACACAGGAGGTCCAGCTGTCTGGAAGACTCGCCTGCGCTGTGCACTCAACAAGAGTTCTGAAT
TTAAGGAGGTTCCTGAGAGGGGCCGCATGGATGTTGCTGAGCCCTACAAGGTGTATCAGTTGCTGCCACC
AGGAATCGTCTCTGGCCAGCCAGGGACTCAGAAAGTACCATCAAAGCGACAGCACAGTTCTGTGTCCTCT
GAGAGGAAGGAGGAAGAGGATGCCATGCAGAACTGCACACTCAGTCCCTCTGTGCTCCAGGACTCCCTCA
ATAATGAGGAGGAGGGGGCCAGTGGGGGAGCAGTCCATTCAGACATTGGGAGCAGCAGCAGCAGCAGCAG
CCCTGAGCCACAGGAAGTTACAGACACAACTGAGGCCCCCTTTCAAGGGGATCAGAGGTCCCTGGAGTTT
CTGCTTCCTCCAGAGCCAGACTACTCACTGCTGCTCACCTTCATCTACAACGGGCGCGTGGTGGGCGAGG
CCCAGGTGCAAAGCCTGGATTGCCGCCTTGTGGCTGAGCCCTCAGGCTCTGAGAGCAGCATGGAGCAGGT
GCTGTTCCCCAAGCCTGGCCCACTGGAGCCCACGCAGCGCCTGCTGAGCCAGCTTGAGAGGGGCATCCTA
GTGGCCAGCAACCCCCGAGGCCTCTTCGTGCAGCGCCTTTGCCCCATCCCCATCTCCTGGAATGCACCCC
AGGCTCCACCTGGGCCAGGCCCGCATCTGCTGCCCAGCAACGAGTGCGTGGAGCTCTTCAGAACCGCCTA
CTTCTGCAGAGACTTGGTCAGGTACTTTCAGGGCCTGGGCCCCCCACCGAAGTTCCAGGTAACACTGAAT
TTCTGGGAAGAGAGCCATGGCTCCAGCCATACTCCACAGAATCTTATCACAGTGAAGATGGAGCAGGCCT
TTGCCCGATACTTGCTGGAGCAGACTCCAGAGCAGCAGGCAGCCATTCTGTCCCTGGTGTAG

Translation (393 aa):
MASGRARCTRKLRNWVVEQVESGQFPGVCWDDTAKTMFRIPWKHAGKQDFREDQDAAFFKAWAIFKGKYK
EGDTGGPAVWKTRLRCALNKSSEFKEVPERGRMDVAEPYKVYQLLPPGIVSGQPGTQKVPSKRQHSSVSS
ERKEEEDAMQNCTLSPSVLQDSLNNEEEGASGGAVHSDIGSSSSSSSPEPQEVTDTTEAPFQGDQRSLEF
LLPPEPDYSLLLTFIYNGRVVGEAQVQSLDCRLVAEPSGSESSMEQVLFPKPGPLEPTQRLLSQLERGIL
VASNPRGLFVQRLCPIPISWNAPQAPPGPGPHLLPSNECVELFRTAYFCRDLVRYFQGLGPPPKFQVTLN
FWEESHGSSHTPQNLITVKMEQAFARYLLEQTPEQQAAILSLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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