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Report for CCDS175.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
175.1 Public Homo sapiens 1 ATP13A2 17 106 76 CCDS HistoryNCBI Gene:23400Re-query CCDS DB by CCDS ID:175.1Re-query CCDS DB by GeneID:23400

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Sequence IDs included in CCDS 175.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI,WTSI ENST00000326735 ENSP00000327214 Accepted alive Link to Ensembl Transcript Viewer:ENST00000326735Link to Ensembl Protein Viewer:ENSP00000327214Re-query CCDS DB by Nucleotide ID:ENST00000326735Re-query CCDS DB by Protein ID:ENSP00000327214
Original member Current member EBI,WTSI OTTHUMT00000006617 OTTHUMP00000002399 Accepted alive Link to Vega Transcript Viewer:OTTHUMT00000006617Link to Vega Protein Viewer:OTTHUMP00000002399Re-query CCDS DB by Nucleotide ID:OTTHUMT00000006617Re-query CCDS DB by Protein ID:OTTHUMP00000002399
Original member NCBI NM_022089.2 NP_071372.1 Updated not alive Link to Nucleotide Sequence:NM_022089.2Link to Protein Sequence:NP_071372.1Re-query CCDS DB by Nucleotide ID:NM_022089Re-query CCDS DB by Protein ID:NP_071372
Current member NCBI NM_022089.3 NP_071372.1 Accepted alive Link to Nucleotide Sequence:NM_022089.3Link to Protein Sequence:NP_071372.1Re-query CCDS DB by Nucleotide ID:NM_022089Re-query CCDS DB by Protein ID:NP_071372Link to BLink:NP_071372.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071372.1 1180 Q9NQ11-1 1180 100% 0 0

Chromosomal Locations for CCDS 175.1

Assembly GRCh38 (GCF_000001405.26)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to NCBI Map Viewer on chromosome 1Link to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1Link to Vega Genome Browser on chromosome 1

Chromosome Start Stop Links
1 16986221 16986358 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1Link to Vega Genome Browser on chromosome 1
1 16986463 16986632 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1Link to Vega Genome Browser on chromosome 1
1 16986805 16986956 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1Link to Vega Genome Browser on chromosome 1
1 16987046 16987269 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1Link to Vega Genome Browser on chromosome 1
1 16988138 16988234 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1Link to Vega Genome Browser on chromosome 1
1 16988322 16988474 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1Link to Vega Genome Browser on chromosome 1
1 16989691 16989770 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1Link to Vega Genome Browser on chromosome 1
1 16989887 16990003 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1Link to Vega Genome Browser on chromosome 1
1 16990127 16990287 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1Link to Vega Genome Browser on chromosome 1
1 16991734 16991858 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1Link to Vega Genome Browser on chromosome 1
1 16992009 16992129 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1Link to Vega Genome Browser on chromosome 1
1 16992243 16992402 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1Link to Vega Genome Browser on chromosome 1
1 16992486 16992581 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1Link to Vega Genome Browser on chromosome 1
1 16993629 16993835 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1Link to Vega Genome Browser on chromosome 1
1 16995976 16996164 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1Link to Vega Genome Browser on chromosome 1
1 16996254 16996300 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1Link to Vega Genome Browser on chromosome 1
1 16996386 16996496 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1Link to Vega Genome Browser on chromosome 1
1 16997020 16997175 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1Link to Vega Genome Browser on chromosome 1
1 17000011 17000142 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1Link to Vega Genome Browser on chromosome 1
1 17000246 17000312 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1Link to Vega Genome Browser on chromosome 1
1 17000400 17000534 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1Link to Vega Genome Browser on chromosome 1
1 17002034 17002103 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1Link to Vega Genome Browser on chromosome 1
1 17002296 17002373 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1Link to Vega Genome Browser on chromosome 1
1 17004332 17004411 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1Link to Vega Genome Browser on chromosome 1
1 17004692 17004821 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1Link to Vega Genome Browser on chromosome 1
1 17005014 17005072 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1Link to Vega Genome Browser on chromosome 1
1 17005374 17005556 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1Link to Vega Genome Browser on chromosome 1
1 17005684 17005778 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1Link to Vega Genome Browser on chromosome 1
1 17011729 17011738 Link to NCBI NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1Link to Vega Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternate exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3543 nt):
ATGAGCGCAGACAGCAGCCCTCTCGTGGGCAGCACGCCCACCGGTTATGGGACCCTGACGATAGGGACAT
CA
ATAGATCCCCTCAGCTCCTCAGTTTCATCCGTGAGGCTCAGCGGCTACTGTGGCAGTCCATGGAGGGT
C
ATCGGCTATCACGTCGTGGTCTGGATGATGGCTGGGATCCCTTTGCTGCTCTTCCGTTGGAAGCCCCTG
TGG
GGGGTGCGGCTGCGGCTCCGGCCCTGCAACCTGGCCCACGCCGAAACACTCGTTATCGAAATAAGAG
AC
AAAGAGGATAGTTCCTGGCAGCTCTTCACTGTCCAGGTGCAGACTGAGGCCATCGGCGAGGGCAGCCT
G
GAGCCGTCCCCACAGTCCCAGGCAGAGGATGGCCGGAGCCAGGCGGCAGTTGGGGCGGTACCAGAGGGT
GCC
TGGAAGGATACGGCCCAGCTCCACAAGAGCGAGGAGGCGGTGAGTGTCGGACAGAAGCGGGTGCTGC
GG
TATTACCTCTTCCAGGGCCAGCGCTATATCTGGATCGAGACCCAGCAAGCCTTCTACCAGGTCAGCCT
C
CTGGACCATGGCCGCTCTTGTGACGACGTCCACCGCTCCCGCCATGGCCTCAGCCTCCAGGACCAAATG
GTG
AGGAAGGCCATTTACGGCCCCAACGTGATCAGCATACCGGTCAAGTCCTACCCCCAGCTGCTGGTGG
AC
GAGGCACTGAACCCCTACTATGGGTTCCAGGCCTTCAGCATCGCGCTGTGGCTGGCTGACCACTACTA
C
TGGTACGCCCTGTGCATCTTCCTCATTTCCTCCATCTCCATCTGCCTGTCGCTGTACAAGACCAGAAAG
CAA
AGCCAGACTCTAAGGGACATGGTCAAGTTGTCCATGCGGGTGTGCGTGTGCCGGCCAGGGGGAGAGG
AA
GAGTGGGTGGACTCCAGTGAGCTAGTGCCCGGAGACTGCCTGGTGCTGCCCCAGGAGGGTGGGCTGAT
G
CCCTGTGATGCCGCCCTGGTGGCCGGCGAGTGCATGGTGAATGAGAGCTCTCTGACAGGAGAGAGCATT
CCA
GTGCTGAAGACGGCACTGCCGGAGGGGCTGGGGCCCTACTGTGCAGAGACACACCGGCGGCACACAC
TC
TTCTGCGGGACCCTCATCTTGCAGGCCCGGGCCTATGTGGGACCGCACGTCCTGGCAGTGGTGACCCG
C
ACAGGGTTCTGCACGGCAAAAGGGGGCCTGGTGAGCTCCATCTTGCACCCCCGGCCCATCAACTTCAAG
TTC
TATAAACACAGCATGAAGTTTGTGGCTGCCCTCTCTGTCCTGGCTCTCCTCGGCACCATCTACAGCA
TC
TTCATCCTCTACCGAAACCGGGTGCCTCTGAATGAGATTGTAATCCGGGCTCTCGACCTGGTGACCGT
G
GTGGTGCCACCTGCCCTGCCTGCTGCCATGACTGTGTGCACGCTCTACGCCCAGAGCCGACTGCGGAGA
CAG
GGCATTTTCTGCATCCACCCACTGCGCATCAACCTGGGGGGCAAGCTGCAGCTGGTGTGTTTCGACA
AG
ACGGGCACCCTCACTGAGGACGGCTTAGACGTGATGGGGGTGGTGCCCCTGAAGGGGCAGGCATTCCT
G
CCCCTGGTCCCAGAGCCTCGCCGCCTGCCTGTGGGGCCCCTGCTCCGAGCACTGGCCACCTGCCATGCC
CTC
AGCCGGCTCCAGGACACCCCCGTGGGCGACCCCATGGACTTGAAGATGGTGGAGTCTACTGGCTGGG
TC
CTGGAGGAAGAGCCGGCTGCAGACTCAGCATTTGGGACCCAGGTCTTGGCAGTGATGAGACCCCCACT
T
TGGGAGCCCCAGCTGCAGGCAATGGAGGAGCCCCCGGTGCCAGTCAGCGTCCTCCACCGCTTCCCCTTC
TCT
TCGGCTCTGCAGCGCATGAGTGTGGTGGTGGCGTGGCCAGGGGCCACTCAGCCCGAGGCCTACGTCA
AA
GGCTCCCCGGAGCTGGTGGCAGGGCTCTGCAACCCCGAGACAGTGCCCACCGACTTCGCCCAGATGCT
G
CAGAGCTATACAGCTGCTGGCTACCGTGTCGTGGCCCTGGCCAGCAAGCCACTGCCCACTGTGCCCAGC
CTG
GAGGCAGCCCAGCAACTGACGAGGGACACTGTGGAAGGAGACCTGAGCCTCCTGGGGCTGCTGGTCA
TG
AGGAACCTACTGAAGCCGCAGACAACGCCAGTTATCCAGGCTCTGCGAAGGACCCGCATCCGCGCCGT
C
ATGGTGACAGGGGACAACCTGCAGACAGCGGTGACTGTGGCCCGGGGCTGTGGCATGGTGGCCCCCCAG
GAG
CATCTGATCATCGTCCACGCCACCCACCCTGAGCGGGGTCAGCCTGCCTCTCTCGAGTTCCTGCCGA
TG
GAGTCCCCCACAGCCGTGAATGGCGTTAAGGATCCTGACCAGGCTGCAAGCTACACCGTGGAGCCAGA
C
CCCCGATCCAGGCACCTGGCCCTCAGCGGGCCCACCTTTGGTATCATTGTGAAGCACTTCCCCAAGCTG
CTG
CCCAAGGTCCTGGTCCAGGGCACTGTCTTTGCCCGCATGGCCCCTGAGCAGAAGACAGAGCTGGTGT
GC
GAGCTACAGAAGCTTCAGTACTGCGTGGGCATGTGCGGAGACGGCGCCAATGACTGTGGGGCCCTGAA
G
GCGGCTGATGTCGGCATCTCGCTGTCCCAGGCAGAAGCCTCAGTGGTCTCACCCTTCACCTCGAGCATG
GCC
AGTATTGAGTGCGTGCCCATGGTCATCAGGGAGGGGCGCTGTTCCCTTGACACTTCGTTCAGCGTCT
TC
AAGTACATGGCTCTGTACAGCCTGACCCAGTTCATCTCCGTCCTGATCCTCTACACGATCAACACCAA
C
CTGGGTGACCTGCAGTTCCTGGCCATCGACCTGGTCATCACCACCACAGTGGCAGTGCTCATGAGCCGC
ACG
GGGCCAGCGCTGGTCCTGGGACGGGTGCGGCCACCGGGGGCGCTGCTCAGCGTGCCCGTGCTCAGCA
GC
CTGCTGCTGCAGATGGTCCTGGTGACCGGCGTGCAGCTAGGGGGCTACTTCCTGACCCTGGCCCAGCC
A
TGGTTCGTGCCTCTGAACAGGACAGTGGCCGCACCAGACAACCTGCCCAACTACGAGAACACCGTGGTC
TTC
TCTCTGTCCAGCTTCCAGTACCTCATCCTGGCTGCAGCCGTGTCCAAGGGGGCGCCCTTCCGCCGGC
CG
CTCTACACCAATGTGCCCTTCCTGGTGGCCCTGGCGCTCCTGAGCTCCGTCCTGGTGGGCCTTGTCCT
G
GTCCCCGGCCTCCTGCAGGGGCCGCTGGCGCTGAGGAACATCACTGACACCGGCTTCAAGCTGCTGCTG
CTG
GGTCTGGTCACCCTCAACTTCGTGGGGGCCTTCATGCTGGAGAGCGTGCTAGACCAGTGCCTCCCCG
CC
TGCCTGCGCCGCCTCCGGCCCAAGCGGGCCTCCAAGAAGCGCTTCAAGCAGCTGGAACGAGAGCTGGC
C
GAGCAGCCCTGGCCGCCGCTGCCCGCCGGCCCCCTGAGGTAG


Translation (1180 aa):
MSADSSPLVGSTPTGYGTLTIGTSIDPLSSSVSSVRLSGYCGSPWRVIGYHVVVWMMAGIPLLLFRWKPL
W
GVRLRLRPCNLAHAETLVIEIRDKE
DSSWQLFTVQVQTEAIGEGSLEPSPQSQAEDGRSQAAVGAVPEG
A
WKDTAQLHKSEEAVSVGQ
KRVLRYYLFQGQRYIWIETQQAFYQVSLLDHGRSCDDVHRSRHGLSLQDQM
V
RKAIYGPNVISIPVKSYPQLLVDEALNPYYGFQAFSIALWLADHYYWYALCIFLISSISICLSLYKTRK
Q
SQTLRDMVKLSMRVCVCRPGG
EEEWVDSSELVPGDCLVLPQEGGLMPCDAALVAGECMVNESSLTGESI
P
VLKTALPEGLGPYCAETHRRHTLFCGTLILQARAYVGPHVLAVVTRT
GFCTAKGGLVSSILHPRPINFK
F
YKHSMKFVAALSVL
ALLGTIYSIFILYRNRVPLNEIVIRALDLVTVVVPPALPAAMTVCTLYAQSRLRR
Q
GIFCIHPLRINLGGKLQLVCFDK
TGTLTEDGLDVMGVVPLKGQAFLPLVPEPRRLPVGPLLRALATCHA
L
SRLQDTPVGDPMDLKMVESTGW
VLEEEPAADSAFGTQVLAVMRPPLWEPQLQAMEEPPVPVSVLHRFPF
S
SALQRMSVVVAWPGATQPEAYVKGSPELVAGLCNPET
VPTDFAQMLQSYTAAGYRVVALASKPLPTVPS
L
EAAQQLT
RDTVEGDLSLLGLLVMRNLLKPQTTPVIQALRRTRIRAVMVTGDNLQTAVTVARGCGMVAPQ
E
HLIIVHATHPERGQPASLEFLPMESPTAVNGVK
DPDQAASYTVEPDPRSRHLALSGPTFGIIVKHFPKL
L
PK
VLVQGTVFARMAPEQKTELVCELQKLQYCVGMCGDGANDCGALKAADVGISLSQAEASVVSPFTSSM
A
SIECVPMVI
REGRCSLDTSFSVFKYMALYSLTQFISVLILYTINTNLGDLQFLAIDLVITTTVAVLMSR
T
GPALVLGRVRPPGALLSVPVLSSLLLQMVLVTGVQLGGYFLTLAQP
WFVPLNRTVAAPDNLPNYENTVV
F
SLSSFQYLILAAAVSKGAPFRRPLYTN
VPFLVALALLSSVLVGLVLVPGLLQGPLALRNITDTGFKLLL
L
GLVTLNFVGAFMLE
SVLDQCLPACLRRLRPKRASKKRFKQLERELAEQPWPPLPAGPLR



Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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