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Report for CCDS6252.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6252.1 Public Homo sapiens 8 PIP4P2 24 110 108 CCDS HistoryNCBI Gene:55529Re-query CCDS DB by CCDS ID:6252.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6252.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000285419.8 ENSP00000285419.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000285419.8Link to Ensembl Protein Viewer:ENSP00000285419.3Re-query CCDS DB by Nucleotide ID:ENST00000285419Re-query CCDS DB by Protein ID:ENSP00000285419
Original member Current member NCBI NM_018710.3 NP_061180.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018710.3Link to Protein Sequence:NP_061180.1Re-query CCDS DB by Nucleotide ID:NM_018710Re-query CCDS DB by Protein ID:NP_061180Link to BLAST:NP_061180.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061180.1 257 Q8N4L2 257 100% 0 0

Chromosomal Locations for CCDS 6252.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 90995677 90995820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 90996654 90996744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91008743 91008795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91018390 91018513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91020157 91020263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91021256 91021404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91040644 91040749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (774 nt):
ATGGCTGCTGATGGGGTGGACGAACGCTCGCCTCTGCTGTCAGCATCCCACTCCGGAAATGTCACTCCCA
CCGCCCCACCGTACTTGCAAGAAAGCAGCCCCAGAGCGGAGCTCCCACCTCCATATACAGCCATTGCCAG
TCCAGACGCCAGTGGTATTCCAGTAATAAACTGCCGTGTGTGCCAATCACTAATCAATTTGGATGGCAAG
CTTCACCAGCATGTGGTTAAGTGCACAGTTTGCAATGAAGCTACGCCAATCAAAAACCCCCCAACAGGCA
AGAAATATGTTAGATGCCCTTGTAATTGTCTTCTCATTTGTAAGGACACATCTCGGCGAATAGGATGCCC
AAGACCCAACTGTAGACGGATAATTAACCTTGGCCCAGTAATGCTTATTTCTGAAGAACAACCAGCTCAG
CCTGCATTGCCAATCCAACCAGAAGGTACAAGGGTCGTGTGTGGGCACTGTGGAAACACATTCCTGTGGA
TGGAACTGAGGTTCAACACTCTGGCAAAATGCCCACACTGCAAAAAAATCTCCTCAGTGGGTAGTGCACT
TCCACGAAGACGCTGCTGTGCATATATTACCATTGGAATGATATGTATTTTCATTGGAGTTGGGTTAACT
GTTGGCACCCCAGATTTTGCAAGGCGATTTCGAGCAACCTATGTTTCTTGGGCAATTGCTTATCTCCTAG
GATTGATCTGCCTTATCCGAGCTTGTTATTGGGGAGCCATAAGAGTCAGTTATCCAGAACACAGTTTTGC
ATAA

Translation (257 aa):
MAADGVDERSPLLSASHSGNVTPTAPPYLQESSPRAELPPPYTAIASPDASGIPVINCRVCQSLINLDGK
LHQHVVKCTVCNEATPIKNPPTGKKYVRCPCNCLLICKDTSRRIGCPRPNCRRIINLGPVMLISEEQPAQ
PALPIQPEGTRVVCGHCGNTFLWMELRFNTLAKCPHCKKISSVGSALPRRRCCAYITIGMICIFIGVGLT
VGTPDFARRFRATYVSWAIAYLLGLICLIRACYWGAIRVSYPEHSFA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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