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Report for CCDS18742.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18742.1 Public Mus musculus 4 Wasf2 23 108 98 CCDS HistoryNCBI Gene:242687Re-query CCDS DB by CCDS ID:18742.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18742.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000084241.11 ENSMUSP00000081263.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084241.11Link to Ensembl Protein Viewer:ENSMUSP00000081263.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000084241Re-query CCDS DB by Protein ID:ENSMUSP00000081263
Original member Current member EBI ENSMUST00000105912.1 ENSMUSP00000101532.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105912.1Link to Ensembl Protein Viewer:ENSMUSP00000101532.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105912Re-query CCDS DB by Protein ID:ENSMUSP00000101532
Original member NCBI NM_153423.6 NP_700472.1 Updated not alive Link to Nucleotide Sequence:NM_153423.6Link to Protein Sequence:NP_700472.1Re-query CCDS DB by Nucleotide ID:NM_153423Re-query CCDS DB by Protein ID:NP_700472
Current member NCBI NM_153423.7 NP_700472.1 Accepted alive Link to Nucleotide Sequence:NM_153423.7Link to Protein Sequence:NP_700472.1Re-query CCDS DB by Nucleotide ID:NM_153423Re-query CCDS DB by Protein ID:NP_700472Link to BLAST:NP_700472.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_700472.1 497 Q8BH43 497 100% 0 0

Chromosomal Locations for CCDS 18742.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 133176483 133176612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133184969 133185103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133185599 133185752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133189078 133189195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133190129 133190259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133192105 133192260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133194396 133194907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133195717 133195874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1494 nt):
ATGCCGTTAGTAACCAGGAACATCGAGCCAAGGCACCTGTGCCGTCAGACGTTGCCTAGCGATACAAGCG
AGCTGGAATGCAGGACCAACATCACCCTGGCAAATGTCATCCGACAGCTGGGCAGCCTGAGTAAGTATGC
AGAGGACATTTTCGGAGAGATTTGTACTCAGGCAAGTGCCTTTGCCTCCCGAGTAAACTCCCTTGCTGAG
CGGGTTGACCGAGTACAAGTTAAAGTCACTCAGCTGGATCCCAAGGAAGAAGAAGTGTCACTACAAGGAA
TCAACACTCGGAAGGCCTTCAGAAGTTCTACCACCCAAGACCAGAAGCTCTTTGACAGGAACTCTCTCCC
GGTGCCCGTCTTAGAGACCTATAACAGCTGTGACGCTCCTCCCCCTCTTAACAATCTCAGTCCTTACAGG
GACGATGGAAAAGAGGCACTCAAATTCTACACCAACCCCTCATACTTCTTTGATCTTTGGAAGGAGAAGA
TGCTGCAGGACACCAAGGATATCATGAAAGAGAAGAGAAAGCATAGGAAAGAAAAGAAAGATAATCCAAA
TAGAGGGAATGTGAACCCACGTAAAATCAAGACACGCAAGGAAGAGTGGGAGAAGATGAAAATGGGACAA
GAATTTGTAGAGTCCAAGGAGAGGCTGGGGCCTTCTGGGTATTCGTCCACCTTGGTGTACCAGAATGGCA
GCATTGGCTCTGTTGAAAATGTGGATGCGGCCAGCTACCCACCACCACCACAGTCGGACTCTGCCTCCTC
ACCTTCCCCTTCATTCTCTGAAGACAACTTGCCTCCCCCGCCAGCAGAATTCAGCTACCCTGCAGACAAC
CAAAGAGGATCTGTCTTGGCTGGACCCAAAAGAACCAGCATGGTCAGCCCAAGCCATCCACCCCCAGCTC
CTCCTCTGAGCTCTCCGCCAGGTCCCAAGCCTGGCTTCGCTCCTCCACCTGCCCCTCCACCTCCACCTCC
CATGAGTGTGCCACCTCCACTACCATCGATGGGATTCGGGTCTCCTGGGACCCCTCCACCCCCATCACCT
CCATCTTTCCCTCCTCACCCTGATTTTGCTGCTCCTCCACCACCTCCCCCACCACCAGCAGCTGACTACC
CAATGCCACCACCTCCTTTGTCCCAACCGTCTGGAGGTGCTCCTCCGCCTCCTCCTCCCCCTCCCCCTCC
AGGGCCCCCGCCTCTCCCCTTCAGCGGTGCTGATGGCCAGCCTGCTGCACCACCACCACCACCACCTTCT
GAGGCCACCAAGCCCAAGTCTTCATTGCCTGCTGTGAGTGACGCGCGCAGTGACCTGCTTTCTGCCATTC
GCCAAGGCTTTCAGCTGCGAAGGGTTGAAGAGCAACGGGAGCAAGAGAAGCGTGATGTGGTGGGCAATGA
TGTGGCCACCATCCTGTCCCGTCGGATCGCTGTTGAGTACAGCGACTCGGAAGATGATTCTTCTGAATTT
GATGAAGACGACTGGTCGGATTAA

Translation (497 aa):
MPLVTRNIEPRHLCRQTLPSDTSELECRTNITLANVIRQLGSLSKYAEDIFGEICTQASAFASRVNSLAE
RVDRVQVKVTQLDPKEEEVSLQGINTRKAFRSSTTQDQKLFDRNSLPVPVLETYNSCDAPPPLNNLSPYR
DDGKEALKFYTNPSYFFDLWKEKMLQDTKDIMKEKRKHRKEKKDNPNRGNVNPRKIKTRKEEWEKMKMGQ
EFVESKERLGPSGYSSTLVYQNGSIGSVENVDAASYPPPPQSDSASSPSPSFSEDNLPPPPAEFSYPADN
QRGSVLAGPKRTSMVSPSHPPPAPPLSSPPGPKPGFAPPPAPPPPPPMSVPPPLPSMGFGSPGTPPPPSP
PSFPPHPDFAAPPPPPPPPAADYPMPPPPLSQPSGGAPPPPPPPPPPGPPPLPFSGADGQPAAPPPPPPS
EATKPKSSLPAVSDARSDLLSAIRQGFQLRRVEEQREQEKRDVVGNDVATILSRRIAVEYSDSEDDSSEF
DEDDWSD


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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