NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS5923.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5923.1 Public Homo sapiens 7 ABCF2 24 110 108 CCDS HistoryNCBI Gene:10061Re-query CCDS DB by CCDS ID:5923.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5923.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000287844.7 ENSP00000287844.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000287844.7Link to Ensembl Protein Viewer:ENSP00000287844.2Re-query CCDS DB by Nucleotide ID:ENST00000287844Re-query CCDS DB by Protein ID:ENSP00000287844
Original member Current member NCBI NM_007189.3 NP_009120.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_007189.3Link to Protein Sequence:NP_009120.1Re-query CCDS DB by Nucleotide ID:NM_007189Re-query CCDS DB by Protein ID:NP_009120Link to BLAST:NP_009120.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_009120.1 623 Q9UG63-1 623 100% 0 0

Chromosomal Locations for CCDS 5923.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 151214054 151214191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151214879 151215082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151215604 151215732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151215967 151216029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151218081 151218191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151218561 151218650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151218754 151218873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151219064 151219159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151221578 151221680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151222521 151222616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151223678 151223849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151223932 151224114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151224776 151224988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 151226305 151226458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1872 nt):
ATGCCCTCCGACCTGGCCAAGAAGAAGGCAGCCAAAAAGAAGGAGGCTGCCAAAGCTCGACAGCGGCCCA
GAAAAGGACATGAAGAAAATGGAGATGTTGTCACAGAACCACAGGTGGCAGAGAAGAATGAGGCCAATGG
CAGAGAGACCACAGAAGTAGATTTGCTGACCAAGGAGCTAGAGGACTTTGAGATGAAGAAAGCTGCTGCT
CGAGCTGTCACTGGCGTCCTGGCCTCTCACCCCAACAGTACTGATGTTCACATCATCAACCTCTCACTTA
CCTTTCATGGTCAAGAGCTGCTCAGTGACACCAAACTGGAATTAAACTCAGGCCGTCGTTATGGCCTCAT
TGGTTTAAATGGAATTGGAAAGTCCATGCTGCTCTCTGCTATTGGGAAGCGTGAAGTGCCCATCCCTGAG
CACATCGACATCTACCATCTGACTCGAGAGATGCCCCCTAGTGACAAGACACCCTTGCATTGTGTGATGG
AAGTCGACACAGAGCGGGCCATGCTGGAGAAAGAGGCAGAGCGGCTGGCTCATGAGGATGCGGAGTGTGA
GAAGCTCATGGAGCTCTACGAGCGCCTGGAGGAGCTGGATGCCGACAAGGCAGAGATGAGGGCCTCGCGG
ATCTTGCATGGACTGGGTTTCACACCTGCCATGCAGCGCAAGAAGCTAAAAGACTTCAGTGGGGGCTGGA
GGATGAGGGTTGCCCTTGCCAGAGCCCTCTTTATTCGGCCCTTCATGCTGCTCCTGGATGAGCCTACCAA
CCACCTGGACCTAGATGCTTGCGTGTGGTTGGAAGAAGAACTAAAAACTTTTAAGCGCATCTTGGTCCTC
GTCTCCCATTCCCAGGATTTTCTGAATGGTGTCTGTACCAATATCATTCACATGCACAACAAGAAACTGA
AGTATTATACGGGTAATTATGATCAGTACGTGAAGACGCGGCTAGAGCTGGAGGAGAACCAGATGAAGAG
GTTTCACTGGGAGCAAGATCAGATTGCACACATGAAGAACTACATTGCGAGGTTTGGTCATGGCAGTGCC
AAGCTGGCCCGGCAGGCCCAGAGCAAGGAGAAGACGCTACAGAAAATGATGGCATCAGGACTGACAGAGA
GGGTCGTGAGCGATAAGACACTGTCATTTTATTTCCCACCATGTGGCAAGATCCCTCCACCTGTCATTAT
GGTGCAAAATGTGAGCTTCAAGTATACAAAAGATGGGCCTTGCATCTACAATAATCTAGAATTTGGAATT
GACCTTGACACACGAGTGGCTCTGGTAGGGCCCAATGGAGCAGGGAAGTCAACTCTTCTGAAGCTGCTAA
CTGGAGAGCTACTACCCACAGATGGCATGATCCGAAAACACTCTCATGTCAAGATAGGGCGTTACCATCA
GCATTTACAAGAGCAGCTGGACTTAGATCTCTCACCTTTGGAGTACATGATGAAGTGCTACCCAGAGATC
AAGGAGAAGGAAGAAATGAGGAAGATCATTGGGCGATACGGTCTCACTGGGAAACAACAGGTGAGCCCAA
TCCGGAACTTGTCAGACGGGCAGAAGTGCCGAGTGTGTCTGGCCTGGCTGGCCTGGCAGAACCCCCACAT
GCTCTTCCTGGATGAACCCACCAATCACCTGGATATCGAGACCATCGACGCCCTGGCAGATGCCATCAAT
GAGTTTGAGGGTGGTATGATGCTGGTCAGCCATGACTTCAGACTCATTCAGCAGGTTGCACAGGAAATTT
GGGTCTGTGAGAAGCAGACAATCACCAAGTGGCCTGGAGACATCCTGGCTTACAAGGAGCACCTCAAGTC
CAAGCTGGTGGATGAGGAGCCCCAGCTCACCAAGAGGACCCACAACGTGTGA

Translation (623 aa):
MPSDLAKKKAAKKKEAAKARQRPRKGHEENGDVVTEPQVAEKNEANGRETTEVDLLTKELEDFEMKKAAA
RAVTGVLASHPNSTDVHIINLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAIGKREVPIPE
HIDIYHLTREMPPSDKTPLHCVMEVDTERAMLEKEAERLAHEDAECEKLMELYERLEELDADKAEMRASR
ILHGLGFTPAMQRKKLKDFSGGWRMRVALARALFIRPFMLLLDEPTNHLDLDACVWLEEELKTFKRILVL
VSHSQDFLNGVCTNIIHMHNKKLKYYTGNYDQYVKTRLELEENQMKRFHWEQDQIAHMKNYIARFGHGSA
KLARQAQSKEKTLQKMMASGLTERVVSDKTLSFYFPPCGKIPPPVIMVQNVSFKYTKDGPCIYNNLEFGI
DLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIRKHSHVKIGRYHQHLQEQLDLDLSPLEYMMKCYPEI
KEKEEMRKIIGRYGLTGKQQVSPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDIETIDALADAIN
EFEGGMMLVSHDFRLIQQVAQEIWVCEKQTITKWPGDILAYKEHLKSKLVDEEPQLTKRTHNV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH