NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS58008.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58008.1 Public Homo sapiens 1 LHX8 24 110 108 CCDS HistoryNCBI Gene:431707Re-query CCDS DB by CCDS ID:58008.1Re-query CCDS DB by GeneID:431707See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58008.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000356261.4 ENSP00000348597.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000356261.4Link to Ensembl Protein Viewer:ENSP00000348597.3Re-query CCDS DB by Nucleotide ID:ENST00000356261Re-query CCDS DB by Protein ID:ENSP00000348597
Original member Current member NCBI NM_001256114.2 NP_001243043.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001256114.2Link to Protein Sequence:NP_001243043.1Re-query CCDS DB by Nucleotide ID:NM_001256114Re-query CCDS DB by Protein ID:NP_001243043Link to BLAST:NP_001243043.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001243043.1 346 Q68G74-2 346 100% 0 0

Chromosomal Locations for CCDS 58008.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 75136615 75136689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75137100 75137261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75140985 75141106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75143118 75143338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75143845 75143948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75148587 75148682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75156893 75157076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75160819 75160895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1041 nt):
ATGTCAGAGGAGTGCGGGCGGACTACAGCCCTGGCGGCCGGGAGGACTCGCAAAGGCGCCGGGGAAGAGG
GACTGGTGAGCCCCGAGGGAGCGGGGGACGAGGACTCGTGCTCCTCCTCGGCCCCGCTGTCCCCGTCGTC
CTCGCCCCGGTCCATGGCCTCGGGCTCCGGCTGCCCTCCTGGCAAGTGTGTGTGCAACAGTTGCGGCCTG
GAGATCGTGGACAAATACCTTCTCAAGGTGAATGACCTATGCTGGCATGTCCGGTGTCTCTCCTGCAGTG
TTTGCAGAACCTCCCTAGGAAGGCACACCAGCTGTTATATTAAAGACAAAGACATTTTCTGCAAACTTGA
TTATTTCAGAAGGTATGGAACTCGCTGCTCTCGATGTGGGAGACACATCCATTCTACTGACTGGGTCCGG
AGAGCCAAGGGGAATGTCTATCACTTGGCATGCTTTGCCTGCTTTTCCTGCAAAAGGCAACTTTCCACAG
GAGAGGAGTTTGCTTTGGTGGAAGAGAAAGTCCTCTGCAGAGTACATTATGACTGCATGCTGGATAATTT
AAAAAGAGAAGTAGAAAATGGGAATGGGATTAGTGTGGAAGGTGCCCTCCTCACAGAGCAAGATGTTAAC
CATCCAAAACCAGCAAAAAGAGCTCGGACCAGCTTTACAGCAGATCAGCTTCAGGTTATGCAAGCACAAT
TTGCTCAGGACAACAACCCAGATGCACAGACACTCCAGAAATTGGCAGAAAGGACAGGCTTGAGCAGACG
TGTGATACAGGTGTGGTTTCAGAATTGTAGAGCACGCCACAAGAAACACGTCAGTCCTAATCACTCATCC
TCCACCCCAGTCACAGCAGTCCCACCCTCCAGGCTGTCTCCACCCATGTTAGAAGAAATGGCTTATTCTG
CCTACGTGCCCCAAGATGGAACGATGTTAACTGCGCTGCATAGTTATATGGATGCTCATTCACCAACAAC
TCTTGGACTCCAGCCCTTGTTACCCCATTCAATGACACAACTGCCAATAAGTCATACCTAA

Translation (346 aa):
MSEECGRTTALAAGRTRKGAGEEGLVSPEGAGDEDSCSSSAPLSPSSSPRSMASGSGCPPGKCVCNSCGL
EIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVR
RAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNLKREVENGNGISVEGALLTEQDVN
HPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQKLAERTGLSRRVIQVWFQNCRARHKKHVSPNHSS
STPVTAVPPSRLSPPMLEEMAYSAYVPQDGTMLTALHSYMDAHSPTTLGLQPLLPHSMTQLPISHT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH