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Report for CCDS5786.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5786.1 Public Homo sapiens 7 SLC13A1 24 110 108 CCDS HistoryNCBI Gene:6561Re-query CCDS DB by CCDS ID:5786.1Re-query CCDS DB by GeneID:6561See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5786.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000194130.7 ENSP00000194130.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000194130.7Link to Ensembl Protein Viewer:ENSP00000194130.2Re-query CCDS DB by Nucleotide ID:ENST00000194130Re-query CCDS DB by Protein ID:ENSP00000194130
Original member Current member NCBI NM_022444.4 NP_071889.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022444.4Link to Protein Sequence:NP_071889.2Re-query CCDS DB by Nucleotide ID:NM_022444Re-query CCDS DB by Protein ID:NP_071889Link to BLAST:NP_071889.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071889.2 595 Q9BZW2 595 100% 0 0

Chromosomal Locations for CCDS 5786.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 123115518 123115655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 123117471 123117608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 123119081 123119242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 123123126 123123235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 123125569 123125675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 123128845 123128946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 123129383 123129481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 123134410 123134529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 123147159 123147310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 123168374 123168422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 123168504 123168561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 123169148 123169335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 123171768 123171904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 123180973 123181101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 123199848 123199946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1788 nt):
ATGAAATTCTTCAGTTACATTCTGGTTTATCGCCGATTTCTCTTCGTGGTTTTCACTGTGTTGGTTTTAC
TACCTCTGCCCATCGTCCTCCACACCAAGGAAGCAGAATGTGCCTACACACTCTTTGTGGTCGCCACATT
TTGGCTCACAGAAGCATTGCCTCTGTCGGTAACAGCTTTGCTACCTAGTTTAATGTTACCCATGTTTGGG
ATCATGCCTTCTAAGAAGGTGGCATCTGCTTATTTCAAGGATTTTCACTTACTGCTAATTGGAGTTATCT
GTTTAGCAACATCCATAGAAAAATGGAATTTGCACAAGAGAATTGCTCTGAAAATGGTGATGATGGTTGG
TGTAAATCCTGCATGGCTGACGCTGGGGTTCATGAGCAGCACTGCCTTTTTGTCTATGTGGCTCAGCAAC
ACCTCGACGGCTGCCATGGTGATGCCCATTGCGGAGGCTGTAGTGCAGCAGATCATCAATGCAGAAGCAG
AGGTCGAGGCCACTCAGATGACTTACTTCAACGGATCAACCAACCACGGACTAGAAATTGATGAAAGTGT
TAATGGACATGAAATAAATGAGAGGAAAGAGAAAACAAAACCAGTTCCAGGATACAATAATGATACAGGG
AAAATTTCAAGCAAGGTGGAGTTGGAAAAGAACTCAGGCATGAGAACCAAATATCGAACAAAGAAGGGCC
ACGTGACACGTAAACTTACGTGTTTGTGCATTGCCTACTCTTCTACCATTGGTGGACTGACAACAATCAC
TGGTACCTCCACCAACTTGATCTTTGCAGAGTATTTCAATACACGCTATCCTGACTGTCGTTGCCTCAAC
TTTGGATCATGGTTTACGTTTTCCTTCCCAGCTGCCCTTATCATTCTACTCTTATCCTGGATCTGGCTTC
AGTGGCTTTTCCTAGGATTCAATTTTAAGGAGATGTTCAAATGTGGCAAAACCAAAACAGTCCAACAAAA
AGCTTGTGCTGAGGTGATTAAGCAAGAATACCAAAAGCTTGGGCCAATAAGGTATCAAGAAATTGTGACC
TTGGTCCTCTTCATTATAATGGCTCTGCTATGGTTTAGTCGAGACCCCGGATTTGTTCCTGGTTGGTCTG
CACTTTTTTCAGAGTACCCTGGTTTTGCTACAGATTCAACTGTTGCTTTACTTATAGGGCTGCTATTCTT
TCTTATCCCAGCTAAGACACTGACTAAAACTACACCTACAGGAGAAATTGTTGCTTTTGATTACTCTCCA
CTGATTACTTGGAAAGAATTCCAGTCATTCATGCCCTGGGATATAGCCATTCTTGTTGGTGGAGGGTTTG
CCCTGGCAGATGGTTGTGAGGAGTCTGGATTATCTAAGTGGATAGGAAATAAATTATCTCCTCTGGGTTC
ATTACCAGCATGGCTAATAATTCTGATATCTTCTTTGATGGTGACATCTTTAACTGAGGTAGCCAGCAAT
CCAGCTACCATTACACTCTTTCTCCCAATATTATCTCCATTGGCCGAAGCCATTCATGTGAACCCTCTTT
ATATTCTGATACCTTCTACTCTGTGTACTTCATTTGCATTCCTCCTACCAGTAGCAAATCCACCCAATGC
TATTGTCTTTTCATATGGTCATCTGAAAGTCATTGACATGGTTAAAGCTGGACTTGGTGTCAACATTGTT
GGTGTTGCTGTGGTTATGCTTGGCATATGTACTTGGATTGTACCCATGTTTGACCTCTACACTTACCCTT
CGTGGGCTCCTGCTATGAGTAATGAGACCATGCCATAA

Translation (595 aa):
MKFFSYILVYRRFLFVVFTVLVLLPLPIVLHTKEAECAYTLFVVATFWLTEALPLSVTALLPSLMLPMFG
IMPSKKVASAYFKDFHLLLIGVICLATSIEKWNLHKRIALKMVMMVGVNPAWLTLGFMSSTAFLSMWLSN
TSTAAMVMPIAEAVVQQIINAEAEVEATQMTYFNGSTNHGLEIDESVNGHEINERKEKTKPVPGYNNDTG
KISSKVELEKNSGMRTKYRTKKGHVTRKLTCLCIAYSSTIGGLTTITGTSTNLIFAEYFNTRYPDCRCLN
FGSWFTFSFPAALIILLLSWIWLQWLFLGFNFKEMFKCGKTKTVQQKACAEVIKQEYQKLGPIRYQEIVT
LVLFIIMALLWFSRDPGFVPGWSALFSEYPGFATDSTVALLIGLLFFLIPAKTLTKTTPTGEIVAFDYSP
LITWKEFQSFMPWDIAILVGGGFALADGCEESGLSKWIGNKLSPLGSLPAWLIILISSLMVTSLTEVASN
PATITLFLPILSPLAEAIHVNPLYILIPSTLCTSFAFLLPVANPPNAIVFSYGHLKVIDMVKAGLGVNIV
GVAVVMLGICTWIVPMFDLYTYPSWAPAMSNETMP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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