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Report for CCDS9400.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9400.1 Public Homo sapiens 13 ZC3H13 24 110 108 CCDS HistoryNCBI Gene:23091Re-query CCDS DB by CCDS ID:9400.1Re-query CCDS DB by GeneID:23091See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9400.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000282007.7 ENSP00000282007.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000282007.7Link to Ensembl Protein Viewer:ENSP00000282007.3Re-query CCDS DB by Nucleotide ID:ENST00000282007Re-query CCDS DB by Protein ID:ENSP00000282007
Original member Current member NCBI NM_015070.6 NP_055885.3 Accepted alive Link to Nucleotide Sequence:NM_015070.6Link to Protein Sequence:NP_055885.3Re-query CCDS DB by Nucleotide ID:NM_015070Re-query CCDS DB by Protein ID:NP_055885Link to BLAST:NP_055885.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055885.3 1564 Q5T200-2 1564 100% 0 0

Chromosomal Locations for CCDS 9400.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 45963822 45964042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 45965280 45965432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 45967504 45968028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 45968748 45969971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 45970362 45970465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 45975283 45975838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 45979813 45980004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 45985297 45985761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 45988787 45989097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46003139 46003336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46010348 46010505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46011415 46011554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46020449 46020557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46042164 46042275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46044955 46045064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46045391 46045507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4695 nt):
ATGTCAAAAATTAGAAGGAAGGTCACAGTGGAAAATACCAAGACTATATCTGATAGCACATCCCGAAGAC
CCAGTGTATTTGAGAGGCTTGGACCCAGCACTGGCAGTACAGCAGAGACACAGTGCCGTAACTGGCTGAA
GACTGGCAACTGCCTCTATGGAAACACATGTAGATTCGTACATGGCCCTTCACCTCGTGGTAAAGGTTAT
AGCAGCAATTATAGAAGGTCACCAGAAAGACCTACAGGGGATCTTAGAGAAAGAATGAAGAACAAGCGCC
AAGACGTGGACACTGAGCCCCAGAAACGAAATACAGAGGAGTCATCCTCACCTGTTAGGAAAGAATCTTC
AAGAGGGAGACATAGGGAAAAGGAAGACATAAAAATCACTAAGGAAAGAACTCCAGAAAGTGAAGAAGAA
AATGTAGAATGGGAAACTAATAGAGATGATTCTGACAATGGAGATATTAATTATGATTATGTTCATGAAT
TGTCATTGGAAATGAAGCGTCAGAAGATACAGAGGGAATTAATGAAGCTGGAACAAGAAAACATGGAGAA
GAGAGAAGAAATTATCATTAAAAAGGAGGTTTCACCAGAAGTGGTTAGATCAAAATTGTCCCCGTCACCT
TCTCTAAGAAAGTCTAGCAAATCTCCGAAGCGAAAATCAAGCCCGAAGTCGTCTTCAGCTAGCAAGAAAG
ATAGGAAGACATCTGCAGTATCTTCTCCCCTGTTGGACCAGCAGAGAAATTCAAAAACCAACCAAAGTAA
AAAGAAAGGACCACGTACTCCTAGTCCACCCCCTCCTATACCAGAAGATATCGCTCTGGGGAAAAAATAC
AAAGAAAAATATAAAGTAAAAGACAGGATAGAAGAAAAAACAAGAGATGGAAAGGACAGAGGACGAGATT
TTGAACGACAAAGAGAAAAGAGAGACAAGCCAAGGTCTACTTCCCCAGCAGGACAGCATCATTCTCCTAT
ATCTTCTAGACATCACTCATCTTCCTCACAATCAGGATCATCTATTCAAAGACATTCTCCTTCTCCTCGT
CGAAAAAGAACTCCTTCACCATCTTATCAGCGGACACTAACTCCACCTTTACGACGCTCTGCCTCTCCTT
ATCCTTCACATTCTTTGTCGTCTCCCCAGAGAAAGCAGAGTCCTCCAAGACATCGCTCTCCAATGCGAGA
GAAAGGGAGACATGATCATGAACGAACTTCACAGTCTCATGATCGACGCCATGAAAGGAGGGAAGATACT
AGGGGCAAACGAGACAGAGAAAAGGACTCAAGAGAAGAACGAGAATATGAACAGGATCAGAGCTCTTCTA
GAGACCACAGAGATGACAGAGAACCTCGAGATGGTCGGGATCGGAGAGATGCCAGAGATACTAGGGACCG
AAGGGAACTAAGAGACTCCAGAGACATGCGGGACTCAAGGGAGATGAGAGATTATAGCAGAGATACCAAA
GAGAGCCGTGATCCCAGAGATTCTCGGTCCACTCGTGATGCCCATGACTACAGGGACCGTGAAGGTCGAG
ATACTCATCGAAAGGAGGATACATATCCAGAAGAATCCCGGAGTTATGGCCGAAACCATTTGAGAGAAGA
AAGTTCTCGTACGGAAATAAGGAATGAGTCCAGAAATGAGTCTCGAAGTGAAATTAGAAATGACCGAATG
GGCCGAAGTAGGGGGAGGGTTCCTGAGTTACCTGAAAAGGGAAGTCGAGGCTCAAGAGGTTCTCAAATTG
ATAGTCACAGTAGTAATAGCAACTATCATGACAGCTGGGAAACTCGAAGTAGCTATCCTGAAAGAGATAG
ATATCCTGAAAGAGACAACAGAGATCAAGCAAGGGATTCTTCCTTTGAGAGAAGACATGGAGAGCGAGAC
CGTCGTGACAACAGAGAGAGAGATCAAAGACCAAGCTCACCAATTCGACATCAGGGAAGGAATGACGAGC
TTGAGCGTGATGAAAGAAGAGAGGAACGAAGAGTAGACAGAGTGGATGATAGGAGAGATGAAAGGGCTAG
AGAGAGAGATCGGGAACGAGAACGAGACAGGGAGCGGGAGAGAGAGAGGGAACGTGAACGGGATCGGGAA
AGAGAAAAAGAGAGAGAACTAGAAAGAGAGCGTGCTAGGGAACGGGAGAGAGAAAGAGAAAAAGAGAGAG
ATCGTGAAAGGGATAGAGACCGAGACCACGATCGAGAGCGGGAAAGAGAGAGGGAACGAGACAGGGAAAA
AGAACGGGAACGAGAAAGAGAAGAGAGAGAGAGGGAGAGAGAGCGAGAACGGGAGAGAGAGCGAGAGCGA
GAACGGGAACGAGAAAGAGCGAGAGAAAGGGATAAAGAACGAGAACGCCAAAGGGATTGGGAAGACAAAG
ACAAAGGACGAGATGACCGCAGAGAAAAGCGAGAAGAGATCCGAGAAGATAGGAATCCAAGAGATGGACA
TGATGAAAGAAAATCAAAGAAGCGCTATAGAAATGAAGGGAGTCCCAGCCCTAGACAGTCCCCGAAGCGC
CGGCGTGAACATTCTCCGGACAGTGATGCCTACAACAGTGGAGATGATAAAAATGAAAAACACAGACTCT
TGAGCCAAGTTGTACGACCTCAAGAATCTCGTTCTCTTAGTCCCTCGCACCTCACAGAAGACAGACAGGG
TAGATGGAAAGAGGAGGATCGTAAACCAGAAAGGAAAGAGAGTTCAAGGCGCTACGAAGAACAGGAACTC
AAGGAGAAAGTTTCTTCTGTAGATAAACAGAGAGAACAGACAGAAATCCTGGAAAGCTCAAGAATGCGTG
CACAGGACATTATAGGACACCACCAGTCTGAAGATCGAGAGACATCTGATCGAGCTCATGATGAAAACAA
GAAGAAAGCAAAAATTCAAAAGAAACCAATTAAGAAAAAGAAAGAGGATGATGTTGGAATAGAGAGGGGT
AACATAGAGACAACATCTGAAGATGGTCAAGTATTTTCACCAAAAAAAGGACAGAAAAAGAAAAGCATTG
AAAAAAAACGTAAAAAATCCAAAGGTGATTCTGATATTTCTGATGAAGAAGCAGCCCAGCAAAGTAAGAA
GAAAAGAGGCCCACGGACTCCCCCTATAACAACTAAAGAGGAATTGGTTGAAATGTGCAATGGTAAGAAT
GGTATTCTAGAGGACTCCCAGAAAAAAGAAGATACAGCATTCAGTGACTGGTCTGATGAGGATGTCCCTG
ACCGTACAGAGGTGACAGAAGCAGAGCATACTGCCACCGCCACGACTCCTGGTAGTACCCCTTCTCCTCT
ATCTTCTCTTCTTCCTCCTCCACCGCCTGTGGCTACTGCCACTGCTACAACTGTGCCTGCAACTCTTGCT
GCCACTACTGCTGCTGCCGCCACCTCTTTCAGCACATCTGCCATCACTATTTCCACCTCTGCCACCCCCA
CCAATACCACCAATAATACTTTTGCCAATGAAGACTCACACAGAAAATGCCACAGAACACGAGTAGAAAA
AGTAGAGACGCCTCACGTGACTATAGAAGATGCACAGCATCGCAAGCCTATGGATCAAAAGAGGAGCAGC
AGCCTCGGGAGCAATCGGAGTAACCGTAGTCATACGTCTGGTCGTCTTCGCTCCCCATCCAATGATTCAG
CCCATCGAAGTGGAGATGACCAAAGTGGTCGAAAGAGAGTACTGCACAGTGGCTCAAGAGATAGAGAAAA
AACAAAAAGCCTGGAAATCACAGGAGAGAGAAAATCTAGGATTGATCAGTTAAAGCGTGGAGAACCCAGT
CGAAGTACTTCTTCAGATCGCCAGGATTCAAGAAGCCATAGTTCAAGAAGAAGTTCTCCAGAGTCAGATC
GACAGGTCCATTCAAGATCTGGGTCATTTGATAGCAGAGACAGGCTTCAAGAACGAGATCGATATGAACA
CGACAGAGAGCGCGAGAGAGAGAGGAGAGATACGAGGCAGAGAGAATGGGACCGAGATGCTGATAAAGAT
TGGCCACGCAACAGGGATCGAGATAGATTGCGAGAACGAGAACGAGAGAGAGAACGAGACAAAAGGAGAG
ACTTGGATAGGGAAAGAGAGAGACTAATTTCTGATTCTGTTGAAAGGGACAGGGACAGAGACAGAGACAG
AACTTTTGAGAGTTCTCAAATAGAGTCTGTGAAACGCTGTGAAGCAAAACTGGAAGGTGAACATGAAAGG
GATCTAGAAAGCACTTCCCGAGACTCTCTAGCCTTGGATAAAGAGAGAATGGATAAAGATCTGGGATCTG
TGCAGGGATTTGAAGAAACAAATAAATCCGAGAGAACTGAGAGTCTGGAAGCAGGAGATGACGAGTCCAA
GTTAGATGATGCACATTCATTAGGCTCTGGTGCTGGAGAAGGATACGAGCCAATCAGTGATGACGAACTA
GATGAAATTCTGGCAGGTGATGCAGAAAAGAGGGAGGACCAACAGGATGAGGAGAAGATGCCAGATCCCT
TAGATGTGATAGATGTGGATTGGTCTGGTCTTATGCCAAAGCATCCAAAAGAACCACGAGAGCCTGGGGC
TGCACTCTTAAAATTCACACCTGGAGCTGTTATGCTAAGAGTTGGGATTTCTAAAAAGTTGGCAGGTTCT
GAACTCTTTGCCAAAGTCAAAGAAACATGTCAGAGACTTTTAGAAAAACCCAAAGGTAGTTTCATTTTAC
TTTAA

Translation (1564 aa):
MSKIRRKVTVENTKTISDSTSRRPSVFERLGPSTGSTAETQCRNWLKTGNCLYGNTCRFVHGPSPRGKGY
SSNYRRSPERPTGDLRERMKNKRQDVDTEPQKRNTEESSSPVRKESSRGRHREKEDIKITKERTPESEEE
NVEWETNRDDSDNGDINYDYVHELSLEMKRQKIQRELMKLEQENMEKREEIIIKKEVSPEVVRSKLSPSP
SLRKSSKSPKRKSSPKSSSASKKDRKTSAVSSPLLDQQRNSKTNQSKKKGPRTPSPPPPIPEDIALGKKY
KEKYKVKDRIEEKTRDGKDRGRDFERQREKRDKPRSTSPAGQHHSPISSRHHSSSSQSGSSIQRHSPSPR
RKRTPSPSYQRTLTPPLRRSASPYPSHSLSSPQRKQSPPRHRSPMREKGRHDHERTSQSHDRRHERREDT
RGKRDREKDSREEREYEQDQSSSRDHRDDREPRDGRDRRDARDTRDRRELRDSRDMRDSREMRDYSRDTK
ESRDPRDSRSTRDAHDYRDREGRDTHRKEDTYPEESRSYGRNHLREESSRTEIRNESRNESRSEIRNDRM
GRSRGRVPELPEKGSRGSRGSQIDSHSSNSNYHDSWETRSSYPERDRYPERDNRDQARDSSFERRHGERD
RRDNRERDQRPSSPIRHQGRNDELERDERREERRVDRVDDRRDERARERDRERERDRERERERERERDRE
REKERELERERAREREREREKERDRERDRDRDHDRERERERERDREKEREREREERERERERERERERER
ERERERARERDKERERQRDWEDKDKGRDDRREKREEIREDRNPRDGHDERKSKKRYRNEGSPSPRQSPKR
RREHSPDSDAYNSGDDKNEKHRLLSQVVRPQESRSLSPSHLTEDRQGRWKEEDRKPERKESSRRYEEQEL
KEKVSSVDKQREQTEILESSRMRAQDIIGHHQSEDRETSDRAHDENKKKAKIQKKPIKKKKEDDVGIERG
NIETTSEDGQVFSPKKGQKKKSIEKKRKKSKGDSDISDEEAAQQSKKKRGPRTPPITTKEELVEMCNGKN
GILEDSQKKEDTAFSDWSDEDVPDRTEVTEAEHTATATTPGSTPSPLSSLLPPPPPVATATATTVPATLA
ATTAAAATSFSTSAITISTSATPTNTTNNTFANEDSHRKCHRTRVEKVETPHVTIEDAQHRKPMDQKRSS
SLGSNRSNRSHTSGRLRSPSNDSAHRSGDDQSGRKRVLHSGSRDREKTKSLEITGERKSRIDQLKRGEPS
RSTSSDRQDSRSHSSRRSSPESDRQVHSRSGSFDSRDRLQERDRYEHDRERERERRDTRQREWDRDADKD
WPRNRDRDRLRERERERERDKRRDLDRERERLISDSVERDRDRDRDRTFESSQIESVKRCEAKLEGEHER
DLESTSRDSLALDKERMDKDLGSVQGFEETNKSERTESLEAGDDESKLDDAHSLGSGAGEGYEPISDDEL
DEILAGDAEKREDQQDEEKMPDPLDVIDVDWSGLMPKHPKEPREPGAALLKFTPGAVMLRVGISKKLAGS
ELFAKVKETCQRLLEKPKGSFILL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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