CCDS Report for Consensus CDS

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Report for CCDS9329.2 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
9329.2	Public	Homo sapiens	13	PAN3	24	110	108

Public Note for CCDS 9329.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript and protein data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 9329.2

Original	Current	Source	Nucleotide ID	Protein ID	MANE	Status in CCDS	Seq. Status	Links
		EBI	ENST00000380958.8	ENSP00000370345.3	MANE Select	Accepted	alive
		NCBI	NM_175854.8	NP_787050.6	MANE Select	Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_787050.6	887	Q58A45-1	887	100%	0	0

Chromosomal Locations for CCDS 9329.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)

Genome Browser links:

Chromosome	Start	Stop
13	28138658	28139087
13	28174272	28174393
13	28176493	28176559
13	28177865	28177935
13	28197185	28197346
13	28220231	28220378
13	28256292	28256539
13	28260447	28260551
13	28261401	28261458
13	28266715	28266876
13	28267095	28267211
13	28267300	28267401
13	28270701	28270866
13	28271981	28272071
13	28277237	28277376
13	28280412	28280541
13	28281315	28281379
13	28287984	28288122
13	28292382	28292522

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2664 nt):
ATGAACAGTGGCGGCGGCCTCCCGCCCCCCTCGGCCGCCGCCTCCCCTTCCTCCTCCTCGCTGGCGGCGG CGGTGGCGGTGGTGGCCCCGCCGGGGGTCGGGGGTGTCCCCGGCGGGGCGGCGGTAGGAGTGAAGCTGAA GTACTGCCGCTACTACGCTAAGGATAAGACTTGCTTCTACGGGGAGGAGTGTCAGTTCCTGCATGAGGAC CCTGCCGCCGGGGCTGCCCCGGGCCTCGGCCTCCATAGCAACAGCGTCCCCCTGGCTCTGGCTGGTGCAC CCGTGGCCGGCTTTCCGCCGGGAGCCGTCGCGGGCGGGGGAGCTGGGCCGCCCCCCGGGCCCAAGAAGCC GGACCTGGGGGACCCGGGGACCGGAGCCGCAGCCGGCGGAGGAGGCAGTAGCGGGGGACTCGATGGACCG CGGCTGGCAATTCCAGGAATGGATGGAGGTGCTTTAACTGATACAAGTCTCACAGATTCCTATTTTAGCA CCAGCTTTATTGGAGTCAATGGATTTGGAAGCCCTGTAGAAACAAAATATCCCCTGATGCAGAGAATGAC TAATAGTAGCAGCTCCCCAAGCCTTCTAAATGACAGTGCCAAGCCATATTCAGCCCATGATCCTCTAACA TCACCTGCTTCATCCTTGTTTAATGACTTTGGTGCCCTCAACATCTCTCAGAGACGAAAGCCAAGGAAGT ATCGCCTGGGGATGCTGGAGGAGAGGCTAGTTCCGATGGGATCAAAGGCACGAAAAGCAAAGAACCCTAT TGGCTGCCTTGCTGACAGGTGTAAATCAGGAGTACCCATCAATATGGTTTGGTGGAACAGAGTCACAGAA AACAATTTACAGACACCAAATCCTACTGCAAGCGAGTTTATTCCTAAAGGAGGATCAACCTCCAGGCTGA GTAACGTGTCCCAGTCAAATATGTCTGCCTTCTCTCAAGTTTTCTCTCACCCATCCATGGGAAGCCCTGC TACTGCTGGATTAGCGCCAGGAATGTCGTTGTCTGCTGGGTCTTCCCCTCTTCATTCCCCCAAGATTACT CCACATACTTCTCCTGCTCCCAGAAGAAGAAGTCACACTCCAAATCCAGCAAGTTACATGGTGCCTTCTA GTGCCTCTACATCTGTTAATAATCCTGTTTCTCAGACTCCGTCTTCTGGTCAGGTGATCCAAAAGGAAAC TGTTGGTGGGACGACTTACTTCTATACAGACACAACTCCAGCACCTTTGACTGGAATGGTGTTTCCAAAC TATCATATTTATCCTCCAACTGCACCTCACGTTGCTTATATGCAACCGAAAGCAAACGCACCTTCCTTCT TCATGGCTGATGAACTCCGACAGGAGCTGATCAACAGACATTTAATAACAATGGCTCAAATTGATCAAGC AGATATGCCAGCAGTTCCTACAGAGGTTGACAGCTACCATAGCCTATTCCCTCTAGAACCACTGCCACCT CCCAACCGGATACAGAAATCAAGTAATTTTGGATATATTACATCTTGCTACAAAGCTGTAAACAGCAAAG ATGATCTGCCATATTGCCTTCGGAGGATACATGGTTTTCGTCTTGTTAACACAAAGTGCATGGTGTTGGT CGACATGTGGAAGAAAATTCAACACTCAAATATCGTAACTTTGCGTGAAGTATTTACCACTAAAGCATTT GCTGAGCCCTCTCTTGTGTTTGCATATGATTTCCATGCTGGAGGAGAAACTATGATGAGCAGACACTTTA ATGACCCTAATGCTGATGCCTACTTCACCAAGAGAAAGTGGGGTCAGCACGAGGGACCATTGCCCAGGCA GCATGCTGGATTATTGCCAGAATCTCTTATTTGGGCATATATTGTCCAACTAAGTTCTGCATTGCGTACC ATTCATACAGCAGGTTTGGCATGTCGAGTTATGGATCCAACAAAGATTCTGATAACTGGCAAAACAAGGT TGCGAGTAAATTGTGTTGGAGTTTTTGATGTTTTAACATTTGATAACAGTCAAAATAATAATCCATTGGC ATTAATGGCCCAGTACCAGCAAGCAGATCTGATATCATTAGGAAAAGTTGTGTTGGCTTTGGCTTGCAAC TCTTTGGCAGGAATTCAGCGAGAGAATTTACAGAAAGCCATGGAACTGGTGACAATCAACTATTCCTCTG ACCTGAAGAATCTGATTTTGTATTTGTTGACTGACCAAAACAGGATGCGAAGTGTAAATGACATCATGCC CATGATTGGTGCTCGATTTTATACTCAATTGGATGCTGCTCAAATGAGAAATGATGTCATAGAGGAAGAC CTTGCAAAGGAGGTTCAAAATGGAAGACTGTTTAGGCTCCTAGCAAAATTGGGAACAATCAATGAGAGGC CGGAGTTTCAGAAGGATCCCACTTGGTCAGAGACTGGAGACCGTTATCTGTTGAAACTCTTTAGGGATCA TCTTTTTCATCAGGTGACAGAAGCAGGTGCTCCCTGGATTGACCTCAGTCATATAATTTCTTGTCTTAAC AAGCTAGATGCTGGTGTGCCAGAAAAAATAAGCCTGATTTCCAGAGATGAGAAGAGTGTACTTGTGGTGA CCTACAGTGACTTAAAGCGCTGCTTTGAAAATACTTTTCAAGAACTGATTGCAGCTGCAAATGGTCAGTT GTAG
Translation (887 aa):
MNSGGGLPPPSAAASPSSSSLAAAVAVVAPPGVGGVPGGAAVGVKLKYCRYYAKDKTCFYGEECQFLHED PAAGAAPGLGLHSNSVPLALAGAPVAGFPPGAVAGGGAGPPPGPKKPDLGDPGTGAAAGGGGSSGGLDGP RLAIPGMDGGALTDTSLTDSYFSTSFIGVNGFGSPVETKYPLMQRMTNSSSSPSLLNDSAKPYSAHDPLT SPASSLFNDFGALNISQRRKPRKYRLGMLEERLVPMGSKARKAKNPIGCLADRCKSGVPINMVWWNRVTE NNLQTPNPTASEFIPKGGSTSRLSNVSQSNMSAFSQVFSHPSMGSPATAGLAPGMSLSAGSSPLHSPKIT PHTSPAPRRRSHTPNPASYMVPSSASTSVNNPVSQTPSSGQVIQKETVGGTTYFYTDTTPAPLTGMVFPN YHIYPPTAPHVAYMQPKANAPSFFMADELRQELINRHLITMAQIDQADMPAVPTEVDSYHSLFPLEPLPP PNRIQKSSNFGYITSCYKAVNSKDDLPYCLRRIHGFRLVNTKCMVLVDMWKKIQHSNIVTLREVFTTKAF AEPSLVFAYDFHAGGETMMSRHFNDPNADAYFTKRKWGQHEGPLPRQHAGLLPESLIWAYIVQLSSALRT IHTAGLACRVMDPTKILITGKTRLRVNCVGVFDVLTFDNSQNNNPLALMAQYQQADLISLGKVVLALACN SLAGIQRENLQKAMELVTINYSSDLKNLILYLLTDQNRMRSVNDIMPMIGARFYTQLDAAQMRNDVIEED LAKEVQNGRLFRLLAKLGTINERPEFQKDPTWSETGDRYLLKLFRDHLFHQVTEAGAPWIDLSHIISCLN KLDAGVPEKISLISRDEKSVLVVTYSDLKRCFENTFQELIAAANGQL

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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