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Report for CCDS8153.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8153.1 Public Homo sapiens 11 LRFN4 24 110 108 CCDS HistoryNCBI Gene:78999Re-query CCDS DB by CCDS ID:8153.1Re-query CCDS DB by GeneID:78999See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8153.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000309602.5 ENSP00000312535.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000309602.5Link to Ensembl Protein Viewer:ENSP00000312535.4Re-query CCDS DB by Nucleotide ID:ENST00000309602Re-query CCDS DB by Protein ID:ENSP00000312535
Original member Current member NCBI NM_001363524.2 NP_001350453.1 Accepted alive Link to Nucleotide Sequence:NM_001363524.2Link to Protein Sequence:NP_001350453.1Re-query CCDS DB by Nucleotide ID:NM_001363524Re-query CCDS DB by Protein ID:NP_001350453Link to BLAST:NP_001350453.1
Original member Current member NCBI NM_024036.5 NP_076941.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024036.5Link to Protein Sequence:NP_076941.2Re-query CCDS DB by Nucleotide ID:NM_024036Re-query CCDS DB by Protein ID:NP_076941Link to BLAST:NP_076941.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001350453.1 635 Q6PJG9 635 100% 0 0
NP_076941.2 635 Q6PJG9 635 100% 0 0

Chromosomal Locations for CCDS 8153.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 66857745 66859093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66859637 66860195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1908 nt):
ATGGCCCCGCCGCTCCTGCTGCTGCTGCTGGCCAGTGGAGCGGCCGCCTGCCCGCTGCCCTGCGTCTGCC
AGAACCTGTCCGAGTCGCTCAGCACCCTCTGTGCCCACCGAGGCCTGCTGTTTGTGCCGCCCAACGTGGA
CCGGCGCACAGTGGAGCTGCGGCTGGCTGACAACTTCATCCAGGCCCTGGGGCCCCCTGACTTCCGCAAC
ATGACGGGACTGGTGGACCTGACACTGTCTCGCAATGCCATCACCCGCATTGGGGCCCGCGCCTTTGGGG
ACCTCGAGAGCCTGCGTTCCCTCCACCTTGACGGCAACAGGCTGGTGGAGCTGGGCACCGGGAGCCTCCG
GGGCCCCGTCAATCTGCAGCACCTCATCCTCAGCGGCAACCAGCTGGGCCGCATCGCGCCGGGAGCCTTC
GACGACTTCCTAGAGAGCCTGGAGGACCTGGACCTGTCCTACAACAACCTCCGGCAGGTGCCCTGGGCCG
GCATCGGCGCCATGCCTGCCCTGCACACCCTCAACCTGGACCATAACCTTATTGACGCACTGCCCCCAGG
CGCCTTCGCCCAGCTCGGTCAGCTCTCCCGCCTGGACCTCACCTCCAACCGCCTGGCCACGCTGGCTCCG
GACCCGCTTTTCTCTCGTGGGCGTGATGCAGAGGCCTCTCCCGCCCCCCTGGTGCTGAGCTTTAGCGGGA
ACCCCCTGCACTGCAACTGTGAGCTGCTGTGGCTGCGGCGGCTGGCGCGGCCGGACGACCTGGAAACGTG
CGCCTCCCCGCCCGGCCTGGCCGGCCGCTACTTCTGGGCAGTGCCCGAGGGCGAGTTCTCCTGTGAGCCG
CCCCTCATTGCCCGCCACACGCAGCGCCTCTGGGTGCTGGAAGGCCAGCGGGCCACGCTGCGGTGCCGGG
CCCTGGGTGACCCCGCGCCTACCATGCACTGGGTCGGTCCTGACGACCGGTTGGTTGGCAACTCCTCCCG
AGCCCGGGCTTTCCCCAACGGGACCTTAGAGATTGGGGTGACCGGCGCTGGGGACGCTGGGGGCTACACC
TGCATCGCCACCAACCCTGCTGGTGAGGCCACAGCCCGAGTAGAACTGCGGGTGCTGGCCTTGCCCCATG
GTGGGAACAGCAGTGCCGAGGGGGGCCGCCCCGGGCCCTCGGACATCGCCGCCTCCGCTCGCACTGCTGC
CGAGGGTGAGGGGACGCTGGAGTCTGAGCCAGCCGTGCAGGTGACGGAGGTGACCGCCACCTCAGGGCTG
GTGAGCTGGGGTCCCGGGCGGCCAGCCGACCCAGTGTGGATGTTCCAAATCCAGTACAACAGCAGCGAAG
ATGAGACCCTCATCTACCGGATTGTCCCAGCCTCCAGCCACCACTTCCTGCTGAAGCACCTCGTCCCCGG
CGCTGACTATGACCTCTGCCTGCTGGCCTTGTCACCGGCCGCTGGGCCCTCTGACCTCACGGCCACCAGG
CTGCTGGGCTGTGCCCATTTCTCCACGCTGCCGGCCTCGCCCCTGTGCCACGCCCTGCAGGCCCACGTGC
TGGGCGGGACCCTGACCGTGGCCGTGGGGGGTGTGCTGGTGGCTGCCTTACTGGTCTTCACTGTGGCCTT
GCTGGTTCGGGGCCGGGGGGCCGGAAATGGCCGCCTCCCCCTCAAGCTCAGCCACGTCCAGTCCCAGACC
AATGGAGGCCCCAGCCCCACACCCAAGGCCCACCCGCCGCGGAGCCCCCCGCCCCGGCCGCAGCGCAGCT
GCTCTCTGGACCTGGGAGATGCCGGGTGCTACGGTTATGCCAGGCGCCTGGGAGGAGCTTGGGCCCGACG
GAGCCACTCTGTGCATGGGGGGCTGCTCGGGGCAGGGTGCCGGGGGGTAGGAGGCAGCGCCGAGCGGCTG
GAAGAGAGTGTGGTGTGA

Translation (635 aa):
MAPPLLLLLLASGAAACPLPCVCQNLSESLSTLCAHRGLLFVPPNVDRRTVELRLADNFIQALGPPDFRN
MTGLVDLTLSRNAITRIGARAFGDLESLRSLHLDGNRLVELGTGSLRGPVNLQHLILSGNQLGRIAPGAF
DDFLESLEDLDLSYNNLRQVPWAGIGAMPALHTLNLDHNLIDALPPGAFAQLGQLSRLDLTSNRLATLAP
DPLFSRGRDAEASPAPLVLSFSGNPLHCNCELLWLRRLARPDDLETCASPPGLAGRYFWAVPEGEFSCEP
PLIARHTQRLWVLEGQRATLRCRALGDPAPTMHWVGPDDRLVGNSSRARAFPNGTLEIGVTGAGDAGGYT
CIATNPAGEATARVELRVLALPHGGNSSAEGGRPGPSDIAASARTAAEGEGTLESEPAVQVTEVTATSGL
VSWGPGRPADPVWMFQIQYNSSEDETLIYRIVPASSHHFLLKHLVPGADYDLCLLALSPAAGPSDLTATR
LLGCAHFSTLPASPLCHALQAHVLGGTLTVAVGGVLVAALLVFTVALLVRGRGAGNGRLPLKLSHVQSQT
NGGPSPTPKAHPPRSPPPRPQRSCSLDLGDAGCYGYARRLGGAWARRSHSVHGGLLGAGCRGVGGSAERL
EESVV


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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