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Report for CCDS63045.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
63045.1 Public Homo sapiens 2 COBLL1 24 110 108 CCDS HistoryNCBI Gene:22837Re-query CCDS DB by CCDS ID:63045.1Re-query CCDS DB by GeneID:22837See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 63045.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000375458.6 ENSP00000364607.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000375458.6Link to Ensembl Protein Viewer:ENSP00000364607.2Re-query CCDS DB by Nucleotide ID:ENST00000375458Re-query CCDS DB by Protein ID:ENSP00000364607
Original member Current member EBI ENST00000652658.2 ENSP00000498242.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000652658.2Link to Ensembl Protein Viewer:ENSP00000498242.1Re-query CCDS DB by Nucleotide ID:ENST00000652658Re-query CCDS DB by Protein ID:ENSP00000498242
Original member Current member NCBI NM_001278461.2 NP_001265390.1 Accepted alive Link to Nucleotide Sequence:NM_001278461.2Link to Protein Sequence:NP_001265390.1Re-query CCDS DB by Nucleotide ID:NM_001278461Re-query CCDS DB by Protein ID:NP_001265390Link to BLAST:NP_001265390.1
Original member Current member NCBI NM_001365672.2 NP_001352601.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001365672.2Link to Protein Sequence:NP_001352601.1Re-query CCDS DB by Nucleotide ID:NM_001365672Re-query CCDS DB by Protein ID:NP_001352601Link to BLAST:NP_001352601.1
Original member Current member NCBI NM_001365673.2 NP_001352602.1 Accepted alive Link to Nucleotide Sequence:NM_001365673.2Link to Protein Sequence:NP_001352602.1Re-query CCDS DB by Nucleotide ID:NM_001365673Re-query CCDS DB by Protein ID:NP_001352602Link to BLAST:NP_001352602.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001265390.1 1128 Q53SF7-4 1128 100% 0 0
NP_001352601.1 1128 Q53SF7-4 1128 100% 0 0
NP_001352602.1 1128 Q53SF7-4 1128 100% 0 0

Chromosomal Locations for CCDS 63045.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 164685946 164686032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164692221 164692397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164694269 164695836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164699405 164699499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164700522 164700756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164704444 164704518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164704952 164705105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164722075 164722311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164722425 164722522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164727969 164728197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164729914 164730115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164743687 164743875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164841156 164841196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3387 nt):
ATGGACGGCCGAACCCCGCGCCCGCAGGACGCCCCAGCCAGGAGAAAACCAAAAGCCAAGGCACCACTTC
CTCCAGCTGAGACCAAATATACTGATGTCTCTTCAGCTGCTGATTCTGTAGAATCCACTGCTTTCATCAT
GGAACAGAAAGAAAACATGATAGATAAAGACGTTGAACTCTCAGTGGTCCTACCTGGGGATATTATCAAA
TCTACTACTGTTCATGGCAGTAAACCTATGATGGACTTGTTGATATTCCTTTGTGCACAGTATCACTTAA
ATCCATCAAGTTACACAATCGATCTGTTGTCAGCTGAACAGAACCACATTAAATTTAAGCCAAACACACC
AATAGGAATGTTGGAGGTAGAGAAGGTAATTTTAAAGCCAAAAATGTTGGATAAGAAAAAACCTACACCT
ATAATACCAGAGAAAACTGTGAGAGTAGTGATTAATTTTAAGAAAACACAGAAGACCATAGTGAGAGTGA
GTCCACATGCATCGCTTCAAGAGCTTGCCCCTATTATATGTAGCAAATGTGAGTTTGATCCGTTGCATAC
ACTATTGTTGAAAGATTATCAATCGCAGGAGCCTCTTGACTTGACAAAATCTCTTAATGACCTGGGACTA
AGAGAATTATATGCGATGGATGTCAACAGAGAGTCCTGCCAAATATCACAAAACCTAGATATTATGAAGG
AGAAAGAAAATAAAGGGTTTTTCAGTTTTTTTCAACGCAGTAAGAAAAAGCGAGACCAAACTGCAAGTGC
CCCTGCAACCCCTCTAGTAAATAAGCACCGCCCAACTTTTACAAGGTCCAATACCATTTCCAAACCATAT
ATTTCCAACACCCTGCCGTCGGATGCACCCAAGAAGAGGCGGGCTCCACTGCCCCCGATGCCAGCATCTC
AGAGTGTCCCCCAAGACCTTGCACACATCCAGGAGAGGCCTGCTTCTTGTATAGTGAAATCCATGAGCGT
GGATGAGACAGATAAGAGTCCCTGTGAAGCAGGAAGAGTGAGGGCAGGTTCACTGCAGCTCAGCAGCATG
TCTGCAGGGAATTCATCTTTGAGAAGGACAAAGCGAAAAGCACCTTCCCCACCCTCCAAAATACCCCCGC
ATCAAAGTGATGAAAATAGTCGTGTGACTGCCTTACAGCCAGTAGATGGAGTTCCTCCAGACAGTGCTTC
AGAAGCAAACTCTCCTGAGGAGCTATCCAGCCCAGCTGGAATAAGCTCTGATTATAGCCTTGAAGAGATA
GATGAAAAGGAAGAACTGAGTGAAGTGCCTAAAGTTGAAGCTGAAAATATTTCTCCGAAGTCACAAGATA
TTCCTTTTGTATCTACTGATATAATAAATACACTGAAAAATGATCCTGACTCAGCCCTTGGCAATGGTAG
TGGAGAGTTCTCACAAAACTCCATGGAAGAAAAACAAGAAACTAAAAGCACAGATGGACAAGAACCACAC
AGTGTAGTATATGATACAAGCAATGGAAAGAAGGTAGTTGACAGTATAAGAAACTTGAAGTCGTTGGGCC
CAAACCAAGAGAATGTAGTTCAAAATGAAATAATTGTCTATCCAGAGAACACAGAAGACAATATGAAAAA
TGGAGTGAAGAAAACAGAAATCAATGTAGAAGGTGTTGCCAAAAATAACAACATTGATATGGAAGTTGAG
AGACCATCAAACTCTGAGGCACATGAAACTGATACTGCTATAAGTTACAAGGAAAACCATCTAGCAGCTT
CATCAGTACCAGATCAAAAACTGAATCAACCCAGTGCAGAAAAGACAAAAGATGCAGCAATTCAGACAAC
CCCTTCTTGTAACAGTTTTGATGGGAAACACCAAGATCATAATTTATCTGACTCCAAAGTTGAAGAATGT
GTGCAAACTTCAAATAACAACATATCAACTCAACACTCATGCTTAAGTTCACAAGATTCTGTAAATACCT
CAAGGGAATTCAGGAGTCAAGGCACCCTAATTATACATTCAGAAGATCCGCTTACCGTAAAAGATCCAAT
TTGTGCACATGGTAATGATGATCTTTTGCCTCCTGTAGATAGGATTGACAAAAATTCCACTGCTTCTTAC
CTAAAGAATTACCCACTTTATAGACAGGACTACAATCCCAAGCCAAAACCTTCAAATGAAATTACACGAG
AGTATATACCCAAAATTGGCATGACTACTTATAAAATAGTGCCTCCCAAATCCTTGGAAATATCGAAAGA
CTGGCAATCAGAAACCATAGAGTATAAAGATGATCAGGACATGCATGCTTTAGGGAAAAAGCACACTCAT
GAGAATGTGAAAGAAACTGCCATCCAAACAGAAGATTCTGCTATTTCTGAAAGCCCAGAAGAGCCACTGC
CAAACCTTAAACCGAAGCCTAACCTGAGAACAGAGCATCAAGTGCCCAGTTCTGTGAGCTCACCTGATGA
TGCCATGGTTAGTCCTCTGAAACCTGCTCCCAAAATGACAAGAGACACTGGCACAGCTCCTTTTGCACCA
AATTTGGAAGAAATAAACAATATTTTGGAATCAAAATTTAAATCTCGGGCTTCAAATGCCCAGGCCAAAC
CCAGCTCTTTTTTTTTGCAGATGCAGAAGAGAGTATCGGGTCACTATGTGACATCTGCAGCTGCCAAGAG
TGTCCATGCTGCCCCTAATCCTGCTCCAAAAGAACTGACAAATAAAGAGGCAGAAAGGGATATGCTGCCT
TCTCCGGAGCAGACTCTTTCTCCCTTAAGTAAAATGCCTCACTCTGTTCCACAACCCCTTGTTGAAAAAA
CTGATGATGATGTCATCGGTCAGGCTCCTGCTGAAGCCTCCCCTCCTCCCATAGCTCCAAAACCTGTGAC
AATTCCTGCTAGTCAGGTATCCACACAAAATCTGAAGACTTTGAAAACTTTTGGTGCCCCACGACCATAC
TCAAGTTCTGGTCCTTCACCGTTTGCTCTTGCTGTAGTGAAAAGGTCACAGTCTTTCAGTAAAGAGCGCA
CCGAGTCACCTAGTGCCAGTGCATTGGTCCAACCTCCAGCCAACACAGAGGAAGGGAAGACTCATTCTGT
AAATAAATTTGTGGACATCCCACAGCTTGGTGTGTCTGATAAGGAAAATAACTCTGCACATAATGAACAG
AATTCCCAAATACCAACTCCAACTGATGGCCCATCATTCACTGTTATGAGACAAAGTTCTTTAACATTCC
AAAGCTCTGACCCAGAACAGATGCGACAGAGTTTGCTGACTGCAATCCGTTCGGGAGAGGCTGCTGCCAA
ATTGAAAAGGGTTACCATTCCATCAAATACAATATCTGTGAATGGAAGGTCAAGACTCAGCCATTCCATG
TCCCCTGATGCCCAGGACGGCCATTAA

Translation (1128 aa):
MDGRTPRPQDAPARRKPKAKAPLPPAETKYTDVSSAADSVESTAFIMEQKENMIDKDVELSVVLPGDIIK
STTVHGSKPMMDLLIFLCAQYHLNPSSYTIDLLSAEQNHIKFKPNTPIGMLEVEKVILKPKMLDKKKPTP
IIPEKTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGL
RELYAMDVNRESCQISQNLDIMKEKENKGFFSFFQRSKKKRDQTASAPATPLVNKHRPTFTRSNTISKPY
ISNTLPSDAPKKRRAPLPPMPASQSVPQDLAHIQERPASCIVKSMSVDETDKSPCEAGRVRAGSLQLSSM
SAGNSSLRRTKRKAPSPPSKIPPHQSDENSRVTALQPVDGVPPDSASEANSPEELSSPAGISSDYSLEEI
DEKEELSEVPKVEAENISPKSQDIPFVSTDIINTLKNDPDSALGNGSGEFSQNSMEEKQETKSTDGQEPH
SVVYDTSNGKKVVDSIRNLKSLGPNQENVVQNEIIVYPENTEDNMKNGVKKTEINVEGVAKNNNIDMEVE
RPSNSEAHETDTAISYKENHLAASSVPDQKLNQPSAEKTKDAAIQTTPSCNSFDGKHQDHNLSDSKVEEC
VQTSNNNISTQHSCLSSQDSVNTSREFRSQGTLIIHSEDPLTVKDPICAHGNDDLLPPVDRIDKNSTASY
LKNYPLYRQDYNPKPKPSNEITREYIPKIGMTTYKIVPPKSLEISKDWQSETIEYKDDQDMHALGKKHTH
ENVKETAIQTEDSAISESPEEPLPNLKPKPNLRTEHQVPSSVSSPDDAMVSPLKPAPKMTRDTGTAPFAP
NLEEINNILESKFKSRASNAQAKPSSFFLQMQKRVSGHYVTSAAAKSVHAAPNPAPKELTNKEAERDMLP
SPEQTLSPLSKMPHSVPQPLVEKTDDDVIGQAPAEASPPPIAPKPVTIPASQVSTQNLKTLKTFGAPRPY
SSSGPSPFALAVVKRSQSFSKERTESPSASALVQPPANTEEGKTHSVNKFVDIPQLGVSDKENNSAHNEQ
NSQIPTPTDGPSFTVMRQSSLTFQSSDPEQMRQSLLTAIRSGEAAAKLKRVTIPSNTISVNGRSRLSHSM
SPDAQDGH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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