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Report for CCDS58129.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58129.1 Public Homo sapiens 11 ELF5 24 110 108 CCDS HistoryNCBI Gene:2001Re-query CCDS DB by CCDS ID:58129.1Re-query CCDS DB by GeneID:2001See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58129.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000429939.6 ENSP00000407589.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000429939.6Link to Ensembl Protein Viewer:ENSP00000407589.2Re-query CCDS DB by Nucleotide ID:ENST00000429939Re-query CCDS DB by Protein ID:ENSP00000407589
Original member Current member NCBI NM_001243080.2 NP_001230009.1 Accepted alive Link to Nucleotide Sequence:NM_001243080.2Link to Protein Sequence:NP_001230009.1Re-query CCDS DB by Nucleotide ID:NM_001243080Re-query CCDS DB by Protein ID:NP_001230009Link to BLAST:NP_001230009.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001230009.1 160 Q9UKW6-4 160 100% 0 0

Chromosomal Locations for CCDS 58129.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 34480218 34480314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34480772 34480967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34482431 34482499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 34505629 34505749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (483 nt):
ATGTTGGACTCGGTGACACACAGCACCTTCCTGCCTAATGCATCCTTCTGCGATCCCCTGATGTCGTGGA
CTGATCTGTTCAGCAATGAAGAGTACTACCCTGCCTTTGAGCATCAGACAGATGCTGATTCCAACTGCTT
GAAAACAAGTGGCATCAAAAGTCAAGACTGTCACAGTCATAGTAGAACAAGCCTCCAAAGTTCTCATCTA
TGGGAATTTGTACGAGACCTGCTTCTATCTCCTGAAGAAAACTGTGGCATTCTGGAATGGGAAGATAGGG
AACAAGGAATTTTTCGGGTGGTTAAATCGGAAGCCCTGGCAAAGATGTGGGGACAAAGGAAGAAAAATGA
CAGAATGACATATGAAAAGTTGAGCAGAGCCCTGAGATACTACTATAAAACAGGAATTTTGGAGCGGGTT
GACCGAAGGTTAGTGTACAAATTTGGAAAAAATGCACACGGGTGGCAGGAAGACAAGCTATGA

Translation (160 aa):
MLDSVTHSTFLPNASFCDPLMSWTDLFSNEEYYPAFEHQTDADSNCLKTSGIKSQDCHSHSRTSLQSSHL
WEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALRYYYKTGILERV
DRRLVYKFGKNAHGWQEDKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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