NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS5654.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5654.1 Public Homo sapiens 7 LMTK2 24 110 108 CCDS HistoryNCBI Gene:22853Re-query CCDS DB by CCDS ID:5654.1Re-query CCDS DB by GeneID:22853See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5654.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000297293.6 ENSP00000297293.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000297293.6Link to Ensembl Protein Viewer:ENSP00000297293.5Re-query CCDS DB by Nucleotide ID:ENST00000297293Re-query CCDS DB by Protein ID:ENSP00000297293
Original member Current member NCBI NM_014916.4 NP_055731.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014916.4Link to Protein Sequence:NP_055731.2Re-query CCDS DB by Nucleotide ID:NM_014916Re-query CCDS DB by Protein ID:NP_055731Link to BLAST:NP_055731.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055731.2 1503 Q8IWU2 1503 100% 0 0

Chromosomal Locations for CCDS 5654.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 98107178 98107280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 98137315 98137442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 98141397 98141541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 98151382 98151455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 98154758 98154876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 98159338 98159425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 98171541 98171674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 98185051 98185135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 98186877 98186998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 98190728 98190877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 98191614 98194572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 98203574 98203706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 98203944 98204186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 98205464 98205492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4512 nt):
ATGCCGGGGCCGCCGGCGTTGCGGCGGAGGCTGCTGCTGCTGCTGCTGGTCCTCCTGATCGCCGGCAGTG
CTGGGGCCGCGCCACTTCCGCAAACAGGTGCAGGGGAGGCGCCACCTGCTGCAGAAGTTTCCTCATCTTT
TGTGATCCTGTGTGTGTGCAGTTTAATAATATTAATAGTGTTAATTGCAAACTGTGTATCCTGCTGTAAG
GACCCAGAAATAGACTTTAAGGAATTTGAAGATAATTTTGATGATGAGATAGATTTCACACCACCAGCAG
AAGACACTCCCTCTGTTCAGTCCCCAGCAGAGGTCTTCACACTTTCAGTACCAAATATTTCACTCCCAGC
TCCCTCGCAATTCCAGCCTTCTGTAGAGGGATTGAAGTCTCAAGTTGCCCGCCACAGTCTAAACTACATA
CAGGAAATTGGAAATGGCTGGTTTGGAAAGGTTCTCTTGGGAGAGATTTACACGGGCACTAGCGTAGCAA
GAGTCATCGTGAAGGAGTTAAAAGCAAGTGCCAACCCAAAGGAACAAGATACTTTTTTGAAAAATGGAGA
ACCTTACTACATTCTTCAGCATCCAAATATTCTTCAGTGTGTTGGACAGTGCGTAGAAGCGATTCCCTAC
CTCCTGGTGTTTGAGTTCTGTGACTTGGGTGACCTGAAGGCGTATCTGCGCAGCGAGCAGGAGCACATGC
GGGGGGACTCACAGACCATGCTGCTGCAGAGGATGGCGTGCGAGGTCGCCGCGGGGCTGGCCGCCATGCA
CAAGCTGCACTTCCTGCACAGTGATTTAGCCCTGCGGAATTGTTTTCTCACCTCCGACTTAAATGTGAAA
GTGGGAGATTACGGAATAGGATTCAGCAGGTACAAGGAGGATTATATTGAAACAGATGATAAAAAAGTTT
TCCCTCTGCGATGGACTGCTCCAGAATTAGTAACCAGCTTTCAAGACAGACTGCTAACTGCAGATCAGAC
TAAGTATAGTAATATCTGGTCTCTGGGTGTGACACTTTGGGAGCTTTTTGACAATGCCGCACAGCCGTAT
TCAAACCTTTCCAACTTAGATGTCCTCAACCAAGTCATTAGAGAGAGAGACACAAAACTCCCGAAGCCCC
AGCTGGAGCAGCCCTACTCTGATAGATGGTATGAAGTCTTACAGTTCTGTTGGCTGTCACCAGAAAAGAG
ACCCGCGGCTGAAGATGTGCACAGGCTGCTGACTTACCTGCGGCTGCAGAGCCAGCGGGACTCAGAGGTC
GACTTTGAACAGCAGTGGAACGCTCTGAAGCCGAACACAAACAGCAGAGACTCCTCCAACAATGCTGCAT
TCCCAATTCTCGACCACTTTGCCAGGGACCGGCTGGGTCGTGAAATGGAGGAAGTCCTCACCGTGACCGA
AACCAGCCAGGGCCTGAGCTTCGAGTATGTCTGGGAGGCCGCTAAGCACGACCACTTTGACGAGCGCAGC
CGGGGCCACCTGGACGAAGGCTTGTCCTACACGAGCATCTTCTATCCGGTTGAAGTTTTTGAGAGTTCGC
TTTCAGATCCTGGGCCCGGAAAGCAAGATGACAGCGGCCAGGATGTCCCCCTGAGGGTCCCTGGAGTGGT
TCCTGTTTTTGATGCCCACAACCTTTCTGTTGGAAGCGACTATTATATCCAGTTAGAAGAAAAAAGTGGT
AGTAACTTGGAGCTTGATTACCCACCAGCGCTGCTCACAACCGACATGGATAATCCAGAAAGGACTGGCC
CTGAACTGTCCCAGCTCACGGCGCTCAGGAGCGTTGAACTTGAGGAGTCCAGTACAGATGAGGACTTCTT
CCAAAGCAGTACAGACCCCAAAGACTCTAGCTTACCAGGGGACTTACACGTGACCAGTGGCCCCGAGAGC
CCTTTCAACAATATATTTAATGATGTGGACAAATCGGAAGATTTGCCCAGTCACCAAAAAATATTCGACT
TAATGGAATTAAACGGAGTTCAAGCCGACTTTAAACCTGCCACTTTAAGTTCCAGTTTGGATAACCCCAA
AGAGTCAGTCATAACAGGCCACTTTGAGAAAGAAAAGCCCCGTAAGATTTTTGACAGTGAGCCTCTCTGC
CTATCAGATAATCTTATGCACCAAGATAATTTTGATCCATTGAATGTTCAAGAATTGTCAGAAAACTTTT
TATTTCTTCAAGAGAAAAACTTACTAAAAGGCTCATTGTCCAGCAAAGAACACATAAATGATCTTCAGAC
AGAACTTAAGAATGCTGGTTTTACTGAAGCTATGTTAGAAACGTCATGTAGAAACTCTTTAGATACTGAG
CTTCAGTTTGCTGAAAATAAGCCAGGCTTGTCTTTGTTGCAGGAAAACGTAAGCACAAAGGGTGACGATA
CAGATGTCATGCTCACAGGTGACACTTTGAGCACCTCATTGCAGTCTTCCCCGGAAGTGCAGGTACCTCC
TACCTCCTTCGAAACAGAAGAAACGCCCCGTCGGGTACCCCCAGACTCACTCCCAACACAGGGAGAAACC
CAGCCCACGTGTTTAGATGTTATTGTCCCGGAGGACTGTCTCCACCAGGACATCAGTCCAGACGCTGTGA
CTGTCCCGGTTGAAATTCTCTCAACTGATGCCAGAACCCACAGCCTGGATAACAGGTCCCAGGACTCTCC
TGGCGAGAGTGAGGAGACCCTGCGACTCACCGAAAGTGACTCTGTTCTTGCTGATGACATCCTTGCCAGC
AGGGTGAGTGTAGGGAGTAGTCTCCCGGAACTGGGACAGGAATTGCACAATAAACCATTTTCGGAAGACC
ATCACAGTCATCGCCGGCTAGAGAAAAACTTAGAGGCTGTGGAGACTTTAAATCAGCTCAATTCTAAAGA
CGCAGCAAAAGAAGCAGGCTTGGTGTCTGCCCTCTCCTCGGACTCAACCAGTCAGGACAGCCTCCTGGAG
GACAGCTTGTCAGCACCCTTCCCAGCCTCTGAGCCGTCCCTGGAAACCCCGGACTCTCTGGAGTCAGTGG
ATGTCCACGAAGCGCTACTGGACTCTTTAGGATCTCACACTCCCCAGAAACTAGTGCCCCCCGATAAGCC
GGCAGACAGTGGCTACGAAACAGAGAACTTGGAGTCTCCCGAGTGGACCTTGCATCCCGCTCCCGAGGGC
ACCGCAGACTCAGAACCAGCCACCACGGGCGATGGCGGCCACAGCGGTCTGCCTCCCAACCCGGTCATTG
TCATCTCAGATGCCGGCGATGGTCACAGAGGCACAGAAGTGACCCCTGAGACGTTCACAGCTGGCTCCCA
GGGTTCATACCGAGACTCTGCGTACTTCTCAGACAATGACTCTGAGCCCGAGAAAAGGTCTGAGGAGGTC
CCGGGAACCTCCCCATCCGCCTTGGTGTTGGTACAGGAGCAGCCCCTACCCGAGCCAGTCCTCCCCGAGC
AAAGTCCTGCTGCCCAGGATAGCTGCCTGGAAGCCAGAAAGAGCCAGCCAGATGAAAGTTGTCTGTCTGC
TTTGCACAACTCCAGTGACCTGGAATTAAGAGCCACGCCGGAGCCAGCACAGACTGGTGTTCCCCAGCAG
GTGCATCCCACGGAAGACGAGGCCAGCAGTCCCTGGAGTGTGCTGAATGCAGAACTTAGCAGCGGCGATG
ACTTCGAGACACAGGACGATCGCCCCTGCACCCTCGCTTCCACGGGGACCAACACGAACGAACTCCTTGC
CTACACCAATTCTGCGCTGGACAAGTCCCTGTCCAGCCACTCCGAGGGCCCGAAGTTGAAGGAGCCGGAC
ATCGAAGGGAAGTACCTGGGGAAACTCGGGGTGTCAGGGATGCTCGACCTCTCAGAGGACGGGATGGATG
CAGACGAGGAGGACGAAAACAGCGACGACTCGGACGAGGACCTGCGGGCCTTCAACCTGCATAGCCTCAG
CTCCGAGTCGGAGGACGAGACCGAGCACCCCGTGCCCATCATCCTCAGCAACGAGGACGGAAGGCACCTG
CGGAGTCTGTTGAAGCCCACAGCGGCCAATGCCCCCGACCCACTGCCCGAGGACTGGAAGAAGGAAAAGA
AGGCAGTCACGTTTTTCGATGATGTCACAGTCTACCTGTTTGACCAGGAGACCCCAACCAAAGAGCTGGG
GCCCTGTGGAGGAGAGGCGTGCGGCCCGGACCTGAGCGGCCCAGCCCCAGCCTCAGGCTCTCCCTACCTG
AGCAGGTGCATCAACTCCGAAAGCTCCACCGACGAAGAAGGTGGTGGCTTTGAGTGGGATGATGACTTCT
CCCCAGATCCTTTTATGTCAAAGACAACAAGTAACCTGCTCAGCTCCAAGCCTTCTCTCCAAACATCCAA
GTACTTTTCTCCGCCGCCACCGGCCCGGAGCACGGAGCAGAGCTGGCCGCACTCGGCGCCTTACTCCCGG
TTCTCCATCTCTCCCGCCAACATTGCCAGCTTTTCCCTCACACACCTGACCGACTCGGACATCGAGCAGG
GCGGAAGCAGCGAAGACGGAGAAAAGGACTAG

Translation (1503 aa):
MPGPPALRRRLLLLLLVLLIAGSAGAAPLPQTGAGEAPPAAEVSSSFVILCVCSLIILIVLIANCVSCCK
DPEIDFKEFEDNFDDEIDFTPPAEDTPSVQSPAEVFTLSVPNISLPAPSQFQPSVEGLKSQVARHSLNYI
QEIGNGWFGKVLLGEIYTGTSVARVIVKELKASANPKEQDTFLKNGEPYYILQHPNILQCVGQCVEAIPY
LLVFEFCDLGDLKAYLRSEQEHMRGDSQTMLLQRMACEVAAGLAAMHKLHFLHSDLALRNCFLTSDLNVK
VGDYGIGFSRYKEDYIETDDKKVFPLRWTAPELVTSFQDRLLTADQTKYSNIWSLGVTLWELFDNAAQPY
SNLSNLDVLNQVIRERDTKLPKPQLEQPYSDRWYEVLQFCWLSPEKRPAAEDVHRLLTYLRLQSQRDSEV
DFEQQWNALKPNTNSRDSSNNAAFPILDHFARDRLGREMEEVLTVTETSQGLSFEYVWEAAKHDHFDERS
RGHLDEGLSYTSIFYPVEVFESSLSDPGPGKQDDSGQDVPLRVPGVVPVFDAHNLSVGSDYYIQLEEKSG
SNLELDYPPALLTTDMDNPERTGPELSQLTALRSVELEESSTDEDFFQSSTDPKDSSLPGDLHVTSGPES
PFNNIFNDVDKSEDLPSHQKIFDLMELNGVQADFKPATLSSSLDNPKESVITGHFEKEKPRKIFDSEPLC
LSDNLMHQDNFDPLNVQELSENFLFLQEKNLLKGSLSSKEHINDLQTELKNAGFTEAMLETSCRNSLDTE
LQFAENKPGLSLLQENVSTKGDDTDVMLTGDTLSTSLQSSPEVQVPPTSFETEETPRRVPPDSLPTQGET
QPTCLDVIVPEDCLHQDISPDAVTVPVEILSTDARTHSLDNRSQDSPGESEETLRLTESDSVLADDILAS
RVSVGSSLPELGQELHNKPFSEDHHSHRRLEKNLEAVETLNQLNSKDAAKEAGLVSALSSDSTSQDSLLE
DSLSAPFPASEPSLETPDSLESVDVHEALLDSLGSHTPQKLVPPDKPADSGYETENLESPEWTLHPAPEG
TADSEPATTGDGGHSGLPPNPVIVISDAGDGHRGTEVTPETFTAGSQGSYRDSAYFSDNDSEPEKRSEEV
PGTSPSALVLVQEQPLPEPVLPEQSPAAQDSCLEARKSQPDESCLSALHNSSDLELRATPEPAQTGVPQQ
VHPTEDEASSPWSVLNAELSSGDDFETQDDRPCTLASTGTNTNELLAYTNSALDKSLSSHSEGPKLKEPD
IEGKYLGKLGVSGMLDLSEDGMDADEEDENSDDSDEDLRAFNLHSLSSESEDETEHPVPIILSNEDGRHL
RSLLKPTAANAPDPLPEDWKKEKKAVTFFDDVTVYLFDQETPTKELGPCGGEACGPDLSGPAPASGSPYL
SRCINSESSTDEEGGGFEWDDDFSPDPFMSKTTSNLLSSKPSLQTSKYFSPPPPARSTEQSWPHSAPYSR
FSISPANIASFSLTHLTDSDIEQGGSSEDGEKD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH