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Report for CCDS55575.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55575.1 Public Homo sapiens 1 CAMTA1 24 110 108 CCDS HistoryNCBI Gene:23261Re-query CCDS DB by CCDS ID:55575.1Re-query CCDS DB by GeneID:23261See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55575.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000557126.5 ENSP00000451510.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000557126.5Link to Ensembl Protein Viewer:ENSP00000451510.1Re-query CCDS DB by Nucleotide ID:ENST00000557126Re-query CCDS DB by Protein ID:ENSP00000451510
Original member Current member NCBI NM_001242701.2 NP_001229630.1 Accepted alive Link to Nucleotide Sequence:NM_001242701.2Link to Protein Sequence:NP_001229630.1Re-query CCDS DB by Nucleotide ID:NM_001242701Re-query CCDS DB by Protein ID:NP_001229630Link to BLAST:NP_001229630.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001229630.1 101 Q9Y6Y1-4 101 100% 0 0

Chromosomal Locations for CCDS 55575.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 6785531 6785575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6820181 6820250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6825092 6825210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6887654 6887725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (306 nt):
ATGTGGCGCGCGGAGGGGAAATGGCTGCCGAAAACAAGCCGGAAGAGCGTTTCCCAAAGTGTATTCTGCG
GAACTAGCACCTACTGTGTTCTCAACACCGTGCCACCTATAGAAGATGATCATGGGAACAGCAATAGTAG
TCATGTAAAAATCTTTTTACCGAAAAAGCTGCTTGAATGTCTGCCGAAATGTTCAAGTTTACCAAAAGAG
AGGCACCGCTGGAACACTAATGAGGCTCTCACCACACACTTGTTCATGGGCGCAGCAAAGAAGAGGGATC
CACAGAGCTGGAGCCATGAGGGCTGA

Translation (101 aa):
MWRAEGKWLPKTSRKSVSQSVFCGTSTYCVLNTVPPIEDDHGNSNSSHVKIFLPKKLLECLPKCSSLPKE
RHRWNTNEALTTHLFMGAAKKRDPQSWSHEG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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